| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,368,101 | T→C | A21A (GCT→GCC) | arnA → | fused UDP‑4‑amino‑4‑deoxy‑L‑arabinose formyltransferase/UDP‑glucuronate dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,368,101 | 0 | T | C | 95.1% | 100.0 / ‑2.7 | 41 | A21A (GCT→GCC) | arnA | fused UDP‑4‑amino‑4‑deoxy‑L‑arabinose formyltransferase/UDP‑glucuronate dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base T (1/1); new base C (21/18); total (22/19) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.35e-01 | |||||||||||
ACCGATGTCCGCGCCCGCCCCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCTGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGTTTATGCGCCGGATAACGTTAATCATCCGCTGTG > NC_000913/2367968‑2368238 | acCGATGTGCGCGCCCGCCCCCGCTGTTTTGTTCAGCAAGTTATCCGTCCATCCAGTAAGGAAATTTAATATTGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTAc < 1:1040387/143‑1 (MQ=255)acCGATGTCCGCGCCCGCCCCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATCAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGttgc > 1:1020044/1‑141 (MQ=255) ccGATGTCCGCGCCCGCCCCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACg < 2:939216/143‑1 (MQ=255) cGATGTCCGCGCCCGCCCCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGATGCCCTGGTGCCCGCCGGtctcgc > 1:386668/1‑138 (MQ=255) tGTCCGCGCTCGCCGCCGCTATTTTGTTCAGCAAGTTGTCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAAt < 2:1141157/143‑1 (MQ=255) ccgcccCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGCTACGAACGTAGCGccgt > 1:459588/1‑141 (MQ=255) cgcccCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCAtt > 1:620571/1‑143 (MQ=255) cGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTAcc < 2:470926/143‑1 (MQ=255) ttcttCAGCAAGTCCTCCGTCGTTCCCGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCGCGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCTGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTg < 2:113425/140‑1 (MQ=255) aGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAAta > 1:964212/1‑142 (MQ=255) aGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGACTACCACGATATGGGATGCCTCGGTGTTGCAGCCCTGCTGGCCGCCGGTTTCCACATTAGCGCCATTTTTACCAATACAAATaaac > 1:582911/1‑141 (MQ=255) cAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCCGTTACGAGATTAGCGCCATTTTTCCCCATCCTGATAATccc > 2:8554/1‑143 (MQ=255) cGTCCATCCAGCAAGGAAAATGAATAATAAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGaaaaa < 1:705031/143‑1 (MQ=255) atccaGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCtt < 1:1118917/143‑1 (MQ=255) atccaGCAAGGAAAATGAATAAGGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCtt < 1:268350/143‑1 (MQ=255) tccaGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGCCTCCGTCATCATCGCCATTTTTCCACATACTGATAATCCCGGAAAAAAAgaataa > 1:429596/1‑138 (MQ=255) tccaGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCCGTTACGAAATTAGAGCCATATTTAACAATACAAATAATCACGGAGAAAAAGcatat > 1:914395/1‑139 (MQ=255) caGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGATGCCCTTCTGGCCTCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTa < 1:488915/143‑1 (MQ=255) aGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGCTATGGGATCCCTATGTATTGAACCCCTGCTCGCCGCCGGTTACGACATTAGCTCCAAGTTTAGCAATACTCATACTCCCCCTGAAAAAGcccacgac > 2:783162/1‑137 (MQ=255) aGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTAACCATACAGATAATCCCGGTGAAAAAGCCTGTTag > 2:702042/1‑142 (MQ=255) cAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCACTGCTGGCCGCCGGTTACGAACTTAGCGCCATTTTTACCCATACTGATAATCACGTTGAAACAACCGTTAATgg > 2:357046/1‑143 (MQ=255) gAATATGTATAGTGAATACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCg < 2:781655/143‑1 (MQ=255) aaaTGAATAATGAAATCCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGTGTAATTTTTACGCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGt < 1:654450/143‑1 (MQ=255) aaaGGAATGATGAAATCCGTCGTTTTGGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGt < 2:587291/143‑1 (MQ=255) tGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGCAAAAGCCTTTTTTGATTCTGTGGATCGTATg > 1:1106547/1‑143 (MQ=255) tGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTAGGTATTGAAGCCCTGCTGGCTACCAGTTACGAAATTAGCGCCATTTTTACCCCTACTGATAATGCCGGTGAAAAAGCCTTTTATGGGCAGGCGGCTCGCCTg > 2:33500/1‑143 (MQ=255) taCCGCCGGTTTGGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAATTTTGTGCCATTTTTACCCATACTGATAGGCCCGGGGAAAAGGCCTGTTATGGTTCGGTGGCTCGTCTggcgg < 1:539576/142‑1 (MQ=255) ttttgGCCTACCGCGGCATGGGCGGCCTCGGTATTGAAGCCCTGCTGGCCGCCCGTTACGAACTTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAaga < 2:964212/143‑1 (MQ=255) cACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGCCTGGCGGCGGCCAGGGGCGTTCCggc > 1:152471/1‑142 (MQ=255) aCGATAGGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTTCCCTTACTGATAATTCTGTTTATAAAGCTTTTTATGGTTAGGTGGCACGGCTGGCGGCGGAAAGAGGCATTCCGGtt < 1:281011/143‑1 (MQ=255) atGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGGAAGAGGCATGCCGGCTTATgc > 2:50947/1‑143 (MQ=255) ggATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAACAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGTTTATGCGcc > 1:801958/1‑143 (MQ=255) gcttgcTCAGTATTGGATCCCTCCTTCCCGCCGCTTACGATATTACCTCCATTTTCCCCCATACTGATATTCCCGGCGAAAAAGCCTTTTATGTTTCGGTGGCTCGTCTGGCGGCGTAAAGAGGCATTCCGGTTTATGCGCCg < 2:1020044/138‑1 (MQ=255) gATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAACGCGGCATTCCGGCTTCCGCGCCg > 1:188698/1‑143 (MQ=255) gcTCGGTATTGGATGCTTGGGGGCCGCCGGTTACGAGATTAGCTGCGGTTTTCGCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTTGTCTGGCGGCGGAAAGAGGCATTCCGGTTTATGCGCCGGATa < 2:142732/142‑1 (MQ=255) cTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGTTTATGCGCCGGATaa > 1:942054/1‑143 (MQ=255) tCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGTTTATGCGCCGGATAAc < 1:936790/143‑1 (MQ=255) gAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGCTAATCCCGGTGAAAAAGCCTTTTATGGAACGATGGATTGTAAGACAGCGGAAAGAGGCATTCCGGTTTATGCGCCGGATAACGTTAatca > 1:478037/1‑143 (MQ=255) gAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAGTCTCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCAGTCCGGTTTATGCGCCGGATAACGTTAatga > 2:134899/1‑141 (MQ=255) aaGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGTTTATGCGCCGGATAACGTTAatcat > 1:138947/1‑143 (MQ=255) gCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAATAAGCTTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGTTTATGCGCCGGATAACGTTAATCATcc < 1:873425/143‑1 (MQ=255) ctgcctgcCTGTTACGAATTTAGCTTCCTTTTTACCCATACTGCTAGTCCCGGTGAAAGAGCCTTTTATGCTTCGGTGGCTCGTCTGGCGGCGGAAAGATGCATTCCGGTTTATGCGCCGGATAACGTTAATCATCCGCtgtg < 2:1038620/143‑1 (MQ=255) | ACCGATGTCCGCGCCCGCCCCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCTGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGTTTATGCGCCGGATAACGTTAATCATCCGCTGTG > NC_000913/2367968‑2368238 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |