New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	566777 =	NA (NA)	1925 (48.580)	256/262	NT	97.7%	noncoding (1/1258 nt)	IS3	repeat region
	?	NC_000913	= 572471	45 (1.130)					coding (6/456 nt)	ybcN	DLP12 prophage; DNA base‑flipping protein

AAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTG  >  NC_000913/566637‑566905                                                                                                                                             |                                                                                                                                 aataTCGCTCAAATTAAAGCTATGCTCGGACTAAAAGGAGCAAGTGTATCACGGGCAAAGAGGCAATTATTCATTACCTGGGGATGCATAAGAGCCTCTGTGCACAGTACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGa                                                                                                                                <  1:131112/140‑1 (MQ=255)    aTCGCAGAAATTAAAGCTAAGTTCGGACGGAAAGGAGCAAGGGTATGACGGGCAAAGAGGCAATTATTCATTACCGGGGGACGCATAAGCGCTTCGGTGCACAGGACGTTGCCGCGGTGACAGGCGCCACCGTCATCTGctct                                                                                                                             >  1:268418/1‑143 (MQ=255)        cAGAAATGAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTGCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTAcc                                                                                                                         <  1:201275/143‑1 (MQ=255)          gAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCa                                                                                                                       <  1:233863/143‑1 (MQ=255)             aTTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCa                                                                                                                    >  1:454315/1‑143 (MQ=255)                              aCTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCt                                                                                                   <  1:275727/143‑1 (MQ=255)                                  gaaGGAGGAAGAGTATGACGGGCAAAGGGGCAATTATCCATAACAATTGGTGTCAAAACTGTTTCTGCGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGt                                                                                               <  2:165445/142‑1 (MQ=21)                                  aagcgAGCACGTGTATTACGGGAAAAGAGGCAAGTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGCACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGt                                                                                               <  1:227227/139‑1 (MQ=38)                                  aaaGGCGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGt                                                                                               >  2:524532/1‑143 (MQ=255)                                  aaaGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGt                                                                                               >  1:545885/1‑143 (MQ=255)                                    aGGATCTAGTGTATGTCGCGCAGAGGGCTGATTATTCGTTACCTGGGGACTCATAAGAGCTTCTGTGCACAGGACGTTGCCGCTGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGTTTAAGTGa                                                                                             <  2:58628/143‑1 (MQ=25)                                    aGGAGCAAGTGTATGGCGGGCAAAGAGGCAATTATGCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGa                                                                                             <  1:706709/143‑1 (MQ=255)                                     ggAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCCATAGTGGACACGCGGCTAAGTgcg                                                                                            >  1:763883/1‑141 (MQ=255)                                        tcAAGTGGATGGCGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaa                                                                                         <  2:241421/142‑1 (MQ=255)                                             tggaTGCCGGGCAAAGAGGCAAGTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCGGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct                                                                                    <  2:351125/140‑1 (MQ=255)                                                  gACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTGAACTCtcagtc                                                                               >  1:355887/1‑143 (MQ=255)                                                   aCGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagtca                                                                              <  2:293859/143‑1 (MQ=255)                                                     gggCGAAGAGGCAGTTGTTCATTACCTGGGCACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCaga                                                                            <  2:647583/143‑1 (MQ=255)                                                     gggCAAAGAGGCAATTATGCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAAGCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCaga                                                                            <  2:291843/143‑1 (MQ=255)                                                      ggCAAAGAGGCAATTATTCATGACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCagag                                                                           <  2:72286/143‑1 (MQ=255)                                                                   ttattCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGa                                                              <  2:659629/143‑1 (MQ=255)                                                                   ttattCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGa                                                              >  1:381454/1‑143 (MQ=255)                                                                   ttattCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGa                                                              <  1:209942/143‑1 (MQ=255)                                                                     actccttACCTGTGGACCCATAAGAGCTTCTGTGCACAGGACGTCGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCCGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACa                                                            <  2:335511/138‑1 (MQ=21)                                                                      tgccgtACCTGGGGACGCATAAGAGGTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaa                                                           <  2:559886/138‑1 (MQ=255)                                                                       tCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCACAACCGTAATCTGATCTTACCCAGCAAGAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACACGACaaa                                                          >  1:351503/1‑143 (MQ=255)                                                                           tACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACa                                                      <  1:418194/143‑1 (MQ=255)                                                                             ccTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAAGCGAAAACGGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTGAGAGGTGACTCACATGACAAAAACAGt                                                    >  1:238949/1‑143 (MQ=21)                                                                              cTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGGGAGTAAACTCTCAGTCAGAGGTGACACACATGCCAAAAACAGTa                                                   >  1:267136/1‑143 (MQ=255)                                                                                 gggAGGCATACGGGCTTCTGTGCACAGGACGTTGCCGCGGCAACAGGCGCAACCGTAATCGGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCa                                                <  2:457658/143‑1 (MQ=18)                                                                                           agagCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTaaaa                                      <  1:164029/143‑1 (MQ=255)                                                                                           agagCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATATGATCGTACCCAGCAATAGTGGACACGCGGCTACGTGAGTACACTCTCAGTCAGAGGTGACTCACATGGCAAAAAAAGGATCAACCCGTaaaa                                      >  2:389669/1‑143 (MQ=21)                                                                                             agCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTaaaaga                                    >  1:300872/1‑141 (MQ=255)                                                                                                    gtgCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCCGAAACAGTGGACACGCGGCTAACTTATTAAACTCTCAGTCAGAGGTGACTCACACGACAAAAACAGTATCAACCAGTAAAAAACCCCGTa                             >  1:365330/1‑143 (MQ=18)                                                                                                      gCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTGTGGTCTGAGCCAGACGAGACCCCCCTGACAAAAACAGTATCAACCAGTAAAAAACCCCGTaaa                           >  1:781678/1‑143 (MQ=18)                                                                                                        acaGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTTATCTTACCCAGCAAGAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACa                         <  1:116123/143‑1 (MQ=255)                                                                                                        acaGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGCAAAAAACCCCGTAACCa                         >  1:681758/1‑143 (MQ=255)                                                                                                                gtGCCGCGGTAACAGTCGCAACCGTAATCTGATCTTACCCAGGAAGATTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGc                 <  2:225738/142‑1 (MQ=255)                                                                                                                     gcgGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCACTCGCCTGaa            >  2:196979/1‑143 (MQ=255)                                                                                                                            cgggCGCAACCGTCAGCTGGTCGTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAACAACAGTATCAACCAGTAAAACACCCCGTAAACAGCATTCGCCTGAATTTCGCa     <  1:626449/141‑1 (MQ=11)                                                                                                                               gcgcAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAGACTCTCGGGCCGAGGTGAGTCACATGACAAAAACAGTATTAACCAGTAAACAACCCCGTAAACAGCATTCGCCTGAATTTCGCGGTg  >  1:450937/1‑143 (MQ=11)                                                                                                                                             |                                                                                                                                 AAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTG  >  NC_000913/566637‑566905

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.