| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1096988 = | 25 (0.630) | 5 (0.130) | 5/258 | NT | 17.0% | intergenic (+159/+577) | ycdU/serX | uncharacterized protein YcdU/tRNA‑Ser |
| ? | NC_000913 | 1097191 = | NA (NA) | intergenic (+362/+374) | ycdU/serX | uncharacterized protein YcdU/tRNA‑Ser | |||||
GACCAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGG > NC_000913/1096846‑1097130 | acacaccggggggatgagaagccccgaccggggttcgacaactggcgacagccagttggacagaccgtgaacgcagtgagcgggctgcccgcagggcgagcgaagcgagtcaatccccccctcaccgccatatttaaagaaga > 2:197974‑M1/143‑143 (MQ=255) aCCAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGGAAAAAAAg > 1:728005/1‑143 (MQ=255) aCCAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAg > 1:565136/1‑143 (MQ=255) acaccggggggatgagaagccccgaccggggttcgacaactggcgacagccagttggacagaccgtgcacgcagtgagcgggctgcccgcagggcgagcggagcgcgtcaatccgcccctcacccccatctttaaagaggAGc < 2:517483‑M1/3‑1 (MQ=255) acaccggggggatgagaagccccgaccggggttcgacaactggcgacagccagttggacagaccgtgaacgcagtgagcgggctgcccgcagggaaagacaagatagtgaatggctccctcaccgccatatttaaagaagAGc < 1:328255‑M1/3‑1 (MQ=255) cAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTCAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGcc > 2:413295/1‑143 (MQ=255) aataCATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTAc < 1:467255/143‑1 (MQ=255) aataCATATATGTTCTGTACTCTCTTGCGCATTCTGATTGTTGACTGAGTAACCACACAGTTGATCGGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATGTACGAACAAAAAGCCCGTAc > 1:705353/1‑143 (MQ=255) atatGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTCCGTa > 2:376984/1‑143 (MQ=255) atatGTTCTGTACTCCCTTGCGCATTCTGATTGTTGACTGATGAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTACCAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTa < 1:73757/143‑1 (MQ=38) agaagccccgaccggggttcgacaactggcgacagccagttggacagaccgtgaacgcagtgagcgggctgtccgtaggtcgagcgaagcgagttaattcccccatcaccgccagagttaaagaagAGCTCGTACTTTCGTAc > 1:231727‑M1/127‑143 (MQ=255) tGTTCTGTCATTGCTGGCGCGTTTGGATTGTTGACTGAATAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACATACGTGGGCGGGGGCACCCGGTGTGTGAAATAAACGAAAAAAAAGCCCGTACTTTCGTACGa < 2:203931/143‑1 (MQ=37) ccccggccggggtgcgacaactggcgacagccaactcgacagaccgtgaacgcagtgagcgggctgcccgcagggcgagcgaagcgagtcaatcccccccccaccgccatatttaaagaagAGCCCGTACTTTCGTACGAGct > 2:761301‑M1/122‑143 (MQ=255) cccgaccggggttcgacaactggcgacagccagttggacagaccgtgaacccagtgagcgggctgcccgcagggcgagcgaagcgagtcaatccccccctcaccgccatatttaaagaagAGCCCGTACTTTCGTACGAGctc > 2:617405‑M1/121‑143 (MQ=255) aCTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCtcttct < 2:713298/143‑1 (MQ=255) ctctctTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTcttctt > 1:763639/1‑143 (MQ=255) tctctTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAACAAAGCCCGTACTTTCGTACGAGCTCTTCttt > 1:238991/1‑143 (MQ=255) tctctTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCttt > 1:443661/1‑143 (MQ=255) tctctTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCGGCttt > 1:723711/1‑143 (MQ=255) aTTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCg < 1:210962/143‑1 (MQ=255) aTTTTGATTGTTGACCGGGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGCGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCg < 2:111621/143‑1 (MQ=255) tgttgACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAgggg > 2:746944/1‑143 (MQ=255) gttcgcggAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACGTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAggggg < 2:386607/136‑1 (MQ=255) ttgACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGCGGCACCCGGTGTGTGCAATATACGAAAAAACAGCCCGTACTTTCGTACGAGCTCCTCTTTAAATATGGCGGTGAtggggg > 1:785851/1‑143 (MQ=255) aaCCAGACAGTTGATGTGCACGATTGCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACtcg < 2:660442/143‑1 (MQ=255) gACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTGCGTGCGGGCTCGTCTTTAAATATGACGGTGAGGGGGGGACTGACtcgctgcg > 2:323155/1‑143 (MQ=21) aGTTGAGGTGCGCGATTTGCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTtcgctc < 2:147623/143‑1 (MQ=255) tgCACGATTTCCCCTCGCCCTAACAGACGGGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCg < 1:223998/143‑1 (MQ=255) gATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAg > 1:624926/1‑143 (MQ=255) ccgcagggcgagcgaagcgagtcaatccccccctcaccgccatatttaaagaagAGCCCGTACTTTCGTACGAGCtcttct < 2:198008‑M1/27‑1 (MQ=255) ccgcagggcgagcgaagcgagtcaatccccccctcaccgccatatttaaagaagAGCCCGTACTTTCGTACGAGCtcttct > 1:198008‑M1/55‑81 (MQ=255) cccTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGc > 1:319230/1‑143 (MQ=255) ggcgagcgaagcgagtcaatccccccctcaccgccatatttaaagaaga > 2:172976‑M1/49‑49 (MQ=255) ggcgagcgaagcgagtcaatccccccctcaccgccatatttaaagaaga < 1:172976‑M1/1‑1 (MQ=255) agtgACGTGGGCGGGGGCACCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCa < 2:238991/140‑1 (MQ=255) aCAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTAGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCa < 1:338150/143‑1 (MQ=255) gggggCCCCCGGTGTGTGCAATGTACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCaa < 2:140874/143‑1 (MQ=14) ggCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAATTATGGCGGTGATGGTGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTg < 1:216474/143‑1 (MQ=12) aaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGTCGGTGAAGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTTTCCAACTGGCTGTCGCCAGTTGTCGACCCCCCGt > 1:41953/1‑143 (MQ=255) AGCCCGTACTTTCGTACGAGCTCTTCTTGAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCgggg > 2:360125‑M1/1‑143 (MQ=255) | GACCAGATAATACATATATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGG > NC_000913/1096846‑1097130 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |