New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2380507 =	28 (0.700)	3 (0.080)	3/254	NT	10.0%	coding (137/1296 nt)	menF	isochorismate synthase MenF
	?	NC_000913	2380519 =	27 (0.700)					coding (125/1296 nt)	menF	isochorismate synthase MenF

GTAAGTCGGCGTGTTCCGGGTGCTGGCGAAGAAAACGTTGTGCCTGGTCCAACGACGTAAAACGGGTAATCGCGCCCAGGACGACAGCTTCTTCATCACCATTACGTTGTTGCCAGTAGAATTGCGGGTATGTTTGCTGACTG‑‑‑‑GCCAGCCAGCTCAAGGCATCAAAAGCGTCTTTGAGAGGGAAAGGAATATCGATAACCCGAATGCCGGGTGTCGCCGGAATCTCTTGCGACAAATGGCGCAGTAGATTTTCCAGCGCCGTAGTAAGTGATTGCACGC  >  NC_000913/2380367‑2380645                                                                                                                                             |                                                                                                                                               gTAAGTCGGCGTGTTCCGGGTGCTGGCGAAGAAATCGTTGTGCCTGGTCCAACGCCGTAAAACGGGTAATCGCGCCCAGGACGACAGCTTCTTCATCACCATTACGTTGTTGCCAGTAGAATTGCGGGTATGTTTGCTGACTg                                                                                                                                              <  1:34800/143‑1 (MQ=255)          cgcgtTTCGGGTGCTGGCGACGCAAACGTTGTGCCTGGTCCCACGACGTAACACGGGTAAGCGCGCCCCGGACGACAGCTTCTTCATCCCCATTACGTTGTTGCCAGTAGAATTGCGGGTATGTTTGCTGACTG‑‑‑‑Gccagccag                                                                                                                                 <  1:125225/140‑1 (MQ=255)           gtgtTCCGGGTGCTGGCGAAGAAAACGTTGTGCCTGGTCCAACGACGTAAAACGGGTAATCGCGCCCGGGACGACCGCTTCTTCATCACCATTACGTTGTTGCCCGTAGAGTTGGGGGTCTGTTTGCTGACTG‑‑‑‑Gcccgccagg                                                                                                                                >  1:628139/1‑142 (MQ=255)                    gTGCTGGCGAAGAAAACGTTGTGCCTGGTCCAACGACGTAAAACGGGTAATCGCGCCCAGGACGACAGCTTCTTCATCACCATTACGTTGTTGCCAGTAGAATTGCGGGTATGTTTGCTGACTG‑‑‑‑GCCAGCCAGCTCAAGGCAt                                                                                                                       <  1:298628/143‑1 (MQ=255)                       ttGGCGAATGAAACGCTGTGCCTGGTCCATCGACGTAAAACGTGTATTCTCGCTCAAGACGACAGCTTCCTCCTACCGCCGACGTGGTTGCCAGTCGAATTGCGGGTATGTTTGCTGACTG‑‑‑‑GCCAGCCAGCGCAAGGCATCaa                                                                                                                    <  2:727219/142‑1 (MQ=255)                           cGAAGAAACCGTTCGGCCTGGTCCAACGACGTAAATCGGGTAATCGCGCCCAGGACGACAGCTTCTTCATCACCATTCCGTTGTTGCCCGTAGAATAGCGGGTATGTTTGCTGACTG‑‑‑‑GCCAGCCAGCTCAAGGCATCAAAAGc                                                                                                                <  2:430500/143‑1 (MQ=255)                            gaagaaAACGTTGTGCCTGGTCCAACGACGTAAAACGGGTAATCGCGCCCAGGACGACAGCTTCTTCATCACCATTAAGTTGTAGACAGTAGAATTGCGGGAAAGTTTGCTGACTG‑‑‑‑GCCAGCCAGCTCAAGGCATCGAAAgtg                                                                                                               >  1:115532/1‑141 (MQ=255)                            actacggcggtggaaaatctactgcgccatttgtcgcaagagattccggcgacacccggcattcgggttatcgatattcctttccctctcaaagacgcttttgatgccttgagCTGACTGGCCAGCCAGCTCAAGGCATCaaa                                                                                                                   >  1:736885‑M1/114‑143 (MQ=255)                                               gTCCAACGACGTAAAACGGGTAATCGCGCCCAGGACGACAGCTTCTTCATCACCATTACGTTGTTGCCAGTAGAATTGCGGGTATGTTTGCTGACTG‑‑‑‑GCCAGCCAGCTCAAGGCATCAAAAGCGTCTTTGAAAGGGAAAGGaa                                                                                            >  2:714281/1‑143 (MQ=255)                                                  tgcgccatttgtcgcaagagattccggcgacacccggcattcgggttatcgatattcctttccctctcaaagacgcttttgatgccttgagCTG‑‑‑‑GCCAGCCAGCTCAAGGCATCAAAAGCGTCTTTGAGAGGGAAAgg                                                                                              <  2:579763‑M1/47‑1 (MQ=255)                                                  tgcgccatttgtcgcaagagattccggcgacacccggcattcgggttatcgatattcctttccctctcaaagacgcttttgatgccttgagCTG‑‑‑‑GCCAGCCAGCTCAAGGCATCAAAAGCGTCTTTGAGAGGGAAAgg                                                                                              >  1:579763‑M1/92‑138 (MQ=255)                                                  cAACGACGTAAAACGGGTAATCGCGCCCAGGACGACAGCTTCTTCATCACCATTACGTTGTTGCCAGTAGAATTGCGGGTATGTTTGCTGACTG‑‑‑‑GCCAGCCAGCTCAAGGCATCAAAAGCGTCTTTGAGCGGGAAAGGAatat                                                                                         >  2:108149/1‑143 (MQ=255)                                                         gTAAAACGGGTAATCGCGCCCAGGACGACAGCTTCTTCATCACCATTACGTTGTTGCCAGTAGAATTGCGGGTATGTTTGCTGACTG‑‑‑‑GCCAGCCAGCTCAAGGCATCAAAAGCGTCTTTGAGGGGGAAAGGAATATCGATAAc                                                                                  >  2:241881/1‑143 (MQ=255)                                                               cGGGTGATCGCGGCCAGGACGACAGCTGCTTCAGCCCCATTACGTTGTTGCCAGTAGAATTGCGGGTATGTTTGCTGACTG‑‑‑‑GCCAGCCAGCTCAAGGCATCAAAAGCGTCTTTGAGAGGGAAAGGAATATCGATAACCCGAAt                                                                            <  2:490964/143‑1 (MQ=255)                                                                   tcaTCGCGCCCAGGACGACAGATCATTCATAAGCAATACGGTGTTGAGAGTGGAATTGGGGGTTTGAGTGGTGACTG‑‑‑‑GCCAGCCAGCTCAAGGCATCCAAAGCGTTGTCGGGCGCGTAAGGAATATCGATAACCCGAATGCCg                                                                        <  2:386151/141‑1 (MQ=255)                                                                    aaacgcgCCCAAGATCACTCCGTCATCATCACCATTACGTTGTTGCCAGTAGAATTGCGGGTATGTTTGCTGACTG‑‑‑‑GCCAGCCAGCTCAAGGCATCAAAAGCGTCTTTGAGAGGGAAAGGAATATCGATAACCCGAATGCCgg                                                                       <  1:529071/140‑1 (MQ=255)                                                                    aaTTGCGCCCAGGACGACAGCTTCTTCATCACCATTACGGTGTTGCCAGTAGAATTGCGGGTATGTTTGCTGACTG‑‑‑‑GCCAGCCAGCTCAAGGCATCAAAAGCGTCTTTGAGAGGGAAAGGAATATCGATAACCCGAATGCCgg                                                                       <  2:454442/143‑1 (MQ=255)                                                                    aaTCGCGCCCAGGACGACAGCTTCTTCATCACCATTACGTTGTTGCCAGTAGAATTGCGGGTATGTTTGCTGACTG‑‑‑‑GCCAGCCAGCTCAAGGCATCAAAAGCGTCTTTGAGAGGGAAAGGAATATCGATAACCCGAATGCCgg                                                                       <  1:258538/143‑1 (MQ=255)                                                                              aGGACGACAGCTTCTTCATCACCATTACGTTGTTGCCAGTAGAATTGCGGGTATGTTTGCTGACTG‑‑‑‑GCCAGCCAGCTCAAGGCATCAAAAGCGTCTTTGAGAGGGAAAGGAATATCGATAACCCGAATGCCGGGTGTCGCCgg                                                             >  1:734572/1‑143 (MQ=255)                                                                                gacgacAGCTTCTTCATCACCATTACGTTGTTGCCAGTAGAATTGCGGGTATGTTTGCTGACTG‑‑‑‑GCCAGCCAGCTCAAGGCATCAAAAGCGTCTTTGAGAGGGCAAGGAATATCGATCACCCGAATGCCGGGTGTCGCCGGaa                                                           >  2:530235/1‑143 (MQ=255)                                                                                      aGCTTCTTCATCACCGTTGCGCTGTTGTCAGTAGAATTGCGGGTATGTTTGCTGACTG‑‑‑‑GCCAGCCAGCTCAAGGCATCAAAAGCGTCTTTGAGAGGGAAAGGAATATCGATAACCCGAATGCCGGGTGTCGCCGGAATCTCtt                                                     <  2:380867/143‑1 (MQ=255)                                                                                       gCTTCTTCATCACGTTTGCGTTGTTGCCAGTAGAATTGCGTGTATGTTTGCTGACTG‑‑‑‑GCCAGCTAGCTCAAGGCATCACAAGCGTCTTTGAGAGGGAAAGGAATATCGATAACCCGAATGCCGGGTGTCGCCGGAATCTCTTg                                                    <  2:244746/143‑1 (MQ=255)                                                                                       gCTTCTTCATCAACATTACGTTGGTGGCAGGAGAATTGCGGGTATGTTGGCTGACTG‑‑‑‑GCGAGCGAGCTCAAGGGGTCAAAAGCGTCTTTGAGAGGGAAAGGAATATCGATAACCCGAATGCCGGGTGTCGCCGGAATCTCTTg                                                    <  1:548219/143‑1 (MQ=255)                                                                                                tcaCCATTACGTTGTTGCCAGTAGAATTGCGGGTATGTTTGCTGACTG‑‑‑‑GCCAGCCAGCTCAAGGCATCAAAAGCGTCTTTGAGAGGGAAAGGAATATCGATAACCCGAATGCCGGGTGTCGCCCGACTCTCTTGCGACAAATg                                           >  1:441947/1‑143 (MQ=255)                                                                                                 caCCGTGACGTCGTTGCCAGTAGCATTGCGGGTCTGTTTGCTGACTG‑‑‑‑GCCAGCCAGCTCAAGGCATCAAAAGCGTCTTTGAGAGGGAAAGGAATATCGATAACCCGAATGCCGGGTGTCGCCGGAATCTCTTGCGACAAATgg                                          <  1:370406/143‑1 (MQ=255)                                                                                                 caCCATTACGTTGTTGCCAGTAGAATTGCGGGTATGTTTGCTGACTG‑‑‑‑GCCAGCCAGCTCAAGGCATCAAAAGCGTCTTTGAGAGGGAAAGGAATATCGATAACCCGAATGCCGGGTGGACCCGGAATCTCTTGCGACAAATgg                                          >  2:450733/1‑143 (MQ=255)                                                                                                  aCCATTACGTTGTTGCCAGTAGAATTGCGGGTATGTTTGCTGACTG‑‑‑‑GCCAGCCAGCTCAAGGCATCAAAAGCGTCTTTGAGAGGGAAAGGAATATCGATAACCCGAATGCCGGGTGTCGCCGGAATCTCTTGCGACAAATGgc                                         <  2:233947/143‑1 (MQ=255)                                                                                                          gttgttGCCAGTAGAATTGCGGGTATGTTTGCTGACTG‑‑‑‑GCCAGCCAGCTCAAGGCATCAAAAGCGTCTTTGAGAGGGAAAGGAATATCGATAACCCGAATGCCGGGTGTCGCCGGAATCTCTTGCGACAAATGGCGCAGTAGa                                 >  2:333179/1‑143 (MQ=255)                                                                                                             gttgCCAGTAGAATTGCGGGTATGTTTGCTGACTG‑‑‑‑GCCAGCCAGCTCAAGGCATCAAAAGCGTCTTTGAGAGGGAAAGGAATATCGATACCCCGAACGCCGGGTGTCGCCCGACTCTCTTGCGCCATATTGCGCAGTAGAttt                              >  1:350494/1‑143 (MQ=255)                                                                                                                            gCGGGTATGTTTGCTGACTG‑‑‑‑GCCAGCCAGCTCAAGGCATCAAAAGCGTCTTTGAGAGGGAAAGGAATATCGATAACCCGAATGCCGGGTGTCGCCGGAATCTCTTGCGACAAATGGCGCAGTAGATTTTCCAGCGCCgtagta               >  1:129890/1‑143 (MQ=255)                                                                                                                             cGGGTATGGTCGCTGACTG‑‑‑‑GCCAGCCAGCTCAAGGTATCAAAAGCGTCTTTGAGAGGGAAAGGAATATCGATAGCCCGAATGCCGGGTGTCGCCGGAATCTCGTGCGACAAATGGCGCAGTAGATTTTCCAGCGCCGTAGTaa              <  1:244124/143‑1 (MQ=255)                                                                                                                              gggTATGTTTGCTGACTG‑‑‑‑GCCAGCCAGCTCAAGGCATCAAAAGCGTCTTTGAGAGGGAGAGGAATATCGATAACCCGAATGCCGGGTGTCGCCGGCATCTCTTGAGACAAATGGCGCAGTAAATTTTGCAGCGCCgtaagagg             >  2:70747/1‑138 (MQ=255)                                                                                                                                         cTGACTG‑‑‑‑GCCAGCCAGCTCAAGGCATCAANAGCGTCTTTGAGAGGGAAAGGAATAGCGATAACGCGAATGCCGGGTGTCGCCGGAATCTCTTGCGACAAATGGCGCAGTAGAGGTTCCAGCGCCGGAGTAAGTGAGTGCAcgc  >  1:605026/1‑143 (MQ=255)                                                                                                                                             |                                                                                                                                               GTAAGTCGGCGTGTTCCGGGTGCTGGCGAAGAAAACGTTGTGCCTGGTCCAACGACGTAAAACGGGTAATCGCGCCCAGGACGACAGCTTCTTCATCACCATTACGTTGTTGCCAGTAGAATTGCGGGTATGTTTGCTGACTG‑‑‑‑GCCAGCCAGCTCAAGGCATCAAAAGCGTCTTTGAGAGGGAAAGGAATATCGATAACCCGAATGCCGGGTGTCGCCGGAATCTCTTGCGACAAATGGCGCAGTAGATTTTCCAGCGCCGTAGTAAGTGATTGCACGC  >  NC_000913/2380367‑2380645

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.