| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 572471 | 45 (1.130) | 7 (0.240) +TGATCTTACCCAGCAATAGTGGACACGCGGCTAA |
6/196 | NT | 21.5% | coding (6/456 nt) | ybcN | DLP12 prophage; DNA base‑flipping protein |
| ? | NC_000913 | = 2170235 | 24 (0.600) | noncoding (65/1258 nt) | IS3 | repeat region | |||||
AATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTAC > NC_000913/2170120‑2170376 | aaTCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGCATAACGGTCTGATCTTCCCCAGCAATAGTGGACCCGCGGCTAAGTGAGTAAACTCTCAGTCAGAGCTGACTCACACGACCACAACGGTCTCCCCCAgcccg > 1:706914/1‑139 (MQ=21) actcTTCGCCCATAAGCATTGTCGTATTTCCGCTGTCGAAAATAACGGTCTGATCCTACACCCCAGCCGAGCACGGTCGGCTTTGTCACTAAACCCTCAATCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTaaaa < 1:365881/140‑1 (MQ=12) cTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAAc > 1:721706/1‑143 (MQ=255) tgcGGCGACAAGCATTGTCGTACTCCCGCTGTCGAGAAGAACGGTCTGATCTTACCCAGCAATAGTTGACACGCGGCTAAATGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAAcc < 2:655913/141‑1 (MQ=18) gccaTAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGt < 1:32248/140‑1 (MQ=255) cGATAATGATTGTCGTACTTCCGCTGTCGCGAACAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTAGCAACCAGTAAAAAACCCCGTa < 2:547430/143‑1 (MQ=17) aTAAGTATTGTCGTACTTGCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCTGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTaaa < 2:752123/143‑1 (MQ=255) tAAGCAATGTCGTACTTCCGCAGTCGAGAATAACGGTCTGATCTTACCCAGCAGTAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTACCAACCAGTAAAAAACCCCGTAAAc > 2:601746/1‑143 (MQ=255) aaGCATTGTCTTACTTCCGCTGTCGAGAATAACGGTCTGCTCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACa < 2:233977/143‑1 (MQ=255) aaGCATTCGCGTACCTCCGCTGTCGATAATAACGCTCTTATCTTACCCAGCCATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACa < 2:653041/143‑1 (MQ=14) aGCATTGTCGTACTACCGCTGTCGATAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAACTCAGTAAACTCTCAGTCAGACGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAg < 1:23770/143‑1 (MQ=17) aTTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCCACCAGTAAAAAAACCCGAAAACAGCAt > 2:225804/1‑143 (MQ=255) gTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCt < 2:95987/143‑1 (MQ=255) ttCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTACGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAGAACAGTATCAACCAGTAAAAAACACCGTAAACAGGCTGCGCCTgcag > 2:560640/1‑140 (MQ=14) cTGTCGAGAATAACGGTCTGATCTTACCAAGCCAAAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGc > 2:563135/1‑143 (MQ=255) tggcGAGAATAGCGGTCTGAGCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCGCAGTCAGAGGTGACTCACATGACAAATACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCa < 1:123903/140‑1 (MQ=11) tGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACCCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCa < 1:384388/143‑1 (MQ=255) ctctagaATAACGGTCTTATCTTACCTAGCATTAGTGTACACGCCGCTAAGTTAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAg < 1:555042/139‑1 (MQ=11) tCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAACAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGt > 2:588412/1‑143 (MQ=255) tCGAAAATAACAGTCTAATATTAACCAGCAATAGTGGACAAGCGGCTAAGTGAGTAAACTCTCAGACAGAGGTGACTCACATGACAAAAACAGTAACAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGt < 2:557027/143‑1 (MQ=11) agaATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGaa < 1:94253/143‑1 (MQ=38) aaTAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGc < 2:84571/143‑1 (MQ=35) tAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGccc > 2:40271/1‑143 (MQ=34) cGGTCTGATCTTACCCAGCAATAGTGGACACGCGTCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTTAATTTCGCAGTGAAGCCCTGa < 1:210760/143‑1 (MQ=17) gCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaag < 1:148326‑M2/143‑108 (MQ=255) cTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagg < 1:213602‑M2/143‑109 (MQ=255) tGAGTAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagctgcaaacaattgcaggcgcatttctgcatctgtgaagggagca < 2:616749‑M2/143‑114 (MQ=255) tAAACTCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgacgggagaagagg < 2:368045‑M2/143‑118 (MQ=255) tAAACGCTCAGTCAGAGGTGACTCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcagatgtgaagggggaagaga < 2:653226‑M2/143‑118 (MQ=255) cgactgagaggtgactCACctacccgggcgttcactattgctgggtcagatcagctcccgcttcccctccgcagcggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagagagtttgga > 2:397260‑M2/7‑19 (MQ=255) actgagaggtgtCTCACttagccgccggtccaccattgcggggtaagatcagttcacgcttccgcgccgcagaggtcaaacgctagatgcaaagaatggcaggtgcatttctgcatctgtgaagggagaagagagtttggatt > 2:425799‑M2/5‑17 (MQ=255) tCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcattcctgcatctgagaagggagaagagagttgggattggatgtgcgaatc < 2:379644‑M2/143‑140 (MQ=255) tCACttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggacacacgcgcgctgcaaagaattgcaggtgcatctccgcacctgtgaagggcgaagagcgtctggcttgtatgttcgccta < 2:236569‑M2/143‑140 (MQ=255) aCttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtgcatttctgcatctgtgaagggagaagggaggttggattgtaggtgcgcatcaa < 2:522326‑M2/143‑142 (MQ=255) aCttagccgcgtgtccactattgctgggtaagatcagttcacgcttcccctccgcagaggtcaaacgctagatgcaaagaattgcaggtacatttctgcagcggtgaagggcgcacagagtctcgactgtaggtgcgcatgaa < 1:699954‑M2/143‑142 (MQ=255) | AATCCTTCGGCGATAAGCATTGTCGTACTTCCGCTGTCGAGAATAACGGTCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCTGAAGCTTGCTGAACGCATCGGTGTTACTGCCGCAGCCCGTGAACTCAGCCTGTATGAATCACAACTCTAC > NC_000913/2170120‑2170376 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |