| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 9 (0.230) | 22 (0.630) | 21/232 | NT | 66.8% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 14 (0.400) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
TTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTT‑ATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCA > NC_000913/1209489‑1209759 | gcggcattccaccgccactgaatgattactgattgctcaatacctccaatcataaccggtatagctatgaaaccggggcgtcctaatgtagccgttgctgcattgagttgtgctccttctcccaaaccaaCGTTTATGAAAAt < 1:620419‑M2/13‑1 (MQ=255) cattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcactgagttttgctccttctcgcgaaccaaCGTATATGCAACTgaag > 2:446784‑M2/127‑143 (MQ=255) gtCCGGGTAGTCTTCCGTAGTATAGGCGGCACCAGCGCACTTCAGCCAGGCTGTTGGCGGAGTGGCTGAGGGCCTCGGAACCGGGACAGCACCAGGTAATGCACAGCATCCTCCCACACCAACGTTTATGAAAATGAAGAAAt < 2:500966/142‑1 (MQ=255) cGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAAc < 2:709806/143‑1 (MQ=255) ccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAg < 2:614852‑M2/27‑1 (MQ=255) gaatggttactcattgctcaataccaccaatcatacccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAAt < 2:154277‑M2/32‑1 (MQ=255) ttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGTGACGCCAACAGGTGATGCAGAGCCTTCTCCCAATCCGACGTTTTTGAAAATTAAGAAATCAATAGGAAATg > 1:69054/1‑143 (MQ=255) tgatgactgattgctaaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgcagcatcgagtattgctccttctcccaaacaaaCGATGATGAAAATGAAGAAAAAACAAGCAAAAGGc > 2:646322‑M2/109‑143 (MQ=255) cagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatc > 1:12431/1‑143 (MQ=255) cagAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGGTTATGAAAATGAAGAAATAACACGCAAATGGcatc > 1:259742/1‑143 (MQ=255) gattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTcc > 1:603111‑M2/101‑143 (MQ=255) attgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgctttgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCt > 1:704683‑M2/100‑143 (MQ=255) aaGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCt < 2:512363/143‑1 (MQ=255) tcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAAAAATCACAAGCAAATGGCATCATTCCTGCttt > 2:708716‑M2/95‑143 (MQ=255) tGCATTTCAGCCAGCCTGTTGCCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAgg > 2:689367/1‑143 (MQ=255) atcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAt < 2:442080‑M2/61‑1 (MQ=255) tcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAtt > 2:604041‑M2/82‑143 (MQ=255) taaccggtatagctatgaaaccggtgcgtcctcatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTaa < 1:93792‑M2/65‑1 (MQ=255) agccGGTTGGCGGAGCGGCCTAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACAt < 2:420638/143‑1 (MQ=255) ctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTT‑ATTgg < 1:544624‑M2/77‑1 (MQ=255) atgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaacctaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTT‑ATTGGCt < 1:338997‑M2/79‑1 (MQ=255) tGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGCAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTGTTACCAGGGGGATTTAACATGCTT‑ATTGGCTATGt > 1:313141/1‑143 (MQ=255) gCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTGCTCCCAAACCAACGTTTATGAAGATGAAGAAATAACGAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTT‑ATTGGCTATGTACGCGTATc < 2:627708/143‑1 (MQ=255) ccACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACACTTATGAAAATGAAGAAATAACAAGCAAATCGCATCATCCCAGCTTTTCCCAGGTGGATCTAACATGCTT‑ATTAGCTCTGTACGCGTATca > 2:723961/1‑143 (MQ=255) aCGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTT‑ATTTGCTATGTACGCGTATcaac > 2:778682/1‑143 (MQ=255) aCGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTT‑ATTGGCTATGTACGCGTCTcagc > 2:621935/1‑141 (MQ=255) taatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTT‑ATTGGCTCTGTACGCGTATcaaca > 2:644890‑M2/48‑143 (MQ=255) gggagccgttgctgcagggagttttgctcgtgcgcccaaaccaaCGTTTATGAAGATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTT‑ATTGGCTATGTACGCGTATCAACAAAt < 1:262950‑M2/99‑1 (MQ=255) gccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTT‑ATTGGCTATGTACGCGTATCAACAAATGAcc < 1:735417‑M2/103‑1 (MQ=255) ctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGA‑TTAACATTATTGATTAGCTATGTACGCGTACCAACAAATGACCACAacac > 1:250464‑M2/34‑143 (MQ=255) cattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTT‑ATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGa < 1:293655‑M2/113‑1 (MQ=255) attgagtcttgctccttttccgaaaccctCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGCGGATTTAACATGCTT‑ATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGAt < 2:215075‑M2/114‑1 (MQ=255) atcgcggtttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTT‑ATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGAt < 2:268539‑M2/114‑1 (MQ=255) ttgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTT‑ATTGGCTATGTa < 2:398935‑M2/84‑1 (MQ=255) ttgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTT‑ATTGGCTATGTa > 1:398935‑M2/29‑112 (MQ=255) gCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTT‑ATTGGCTATGTACGCGTATCAACAACTGACCAGAACACGGATCTACCAc > 1:738631/1‑143 (MQ=255) ccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTT‑ATTGGCTATGTACGCGTATCACCAAATGACCAGAACACAGATCTACCACGTAACGCGCTGaa > 1:377578‑M2/10‑143 (MQ=255) caaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTT‑ATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAAc > 1:626179‑M2/9‑143 (MQ=255) caaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTGCTGCTTTTACCAGGGGGATTTAACATGCTT‑ATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTCATGCGCTCGACTGTGc > 2:630477‑M2/4‑143 (MQ=255) aaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTT‑ATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCa < 2:12431‑M2/141‑1 (MQ=255) | TTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTT‑ATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCA > NC_000913/1209489‑1209759 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |