New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2731065 =45 (1.130)3 (0.080) 3/256 NT 6.4% noncoding (93/1542 nt) rrsG 16S ribosomal RNA
?NC_000913 = 4035605 NA (NA)noncoding (75/1542 nt) rrsA 16S ribosomal RNA

GAACGGTAACAGGAAGAAGCTTGCTTCTTTGCTGACGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCT  >  NC_000913/4035594‑4035746
           |                                                                                                                                             
gAACGGTAACAGGAAGAAGCTTGCTTCTTTGCTGACGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGtcc            >  1:187636/1‑141 (MQ=11)
gAACGGTAACAGGAAGAAGCTTGCTTCTTTGCTGACGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGAGAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGTAc            >  2:75000/1‑143 (MQ=17)
 aaCGGTAACAGGAAGAAGCTTGCTTCTTTGCTGACGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGTAcc           >  1:204137/1‑143 (MQ=32)
  aCGGTAACAGGAAGAAGCTTGCTTCTTTGCTGACGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGTAACGGTAGCTAATACCGCATAACGTCGAAAGACCAAAGAGGGGTACCt          >  1:92501/1‑143 (MQ=17)
       aaCAGGAAGAAGCTTGCTTCTTTGCTGACGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGTACCTTCggg     <  1:349849/143‑1 (MQ=32)
          aGGAAGAAGCTTGCTTCTTTGCTGACGAGTGGCAGACGGGTGAGTAATGTCTGGGAAACTGCCTGCTGGAGGGGGATAAATACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGAACAAAGAGGGGTACATTCGGGCct  >  2:340650/1‑143 (MQ=11)
           |                                                                                                                                             
GAACGGTAACAGGAAGAAGCTTGCTTCTTTGCTGACGAGTGGCGGACGGGTGAGTAATGTCTGGGAAACTGCCTGATGGAGGGGGATAACTACTGGAAACGGTAGCTAATACCGCATAACGTCGCAAGACCAAAGAGGGGTACCTTCGGGCCT  >  NC_000913/4035594‑4035746

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.