| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3620131 = | NA (NA) | 3 (0.080) | 3/258 | NT | 100% | coding (940/4236 nt) | rhsB | rhs element protein RhsB |
| ? | NC_000913 | 3620147 = | 0 (0.000) | coding (956/4236 nt) | rhsB | rhs element protein RhsB | |||||
GTGCGCTATGGCTGGACGCCACGCGGCGAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCGGAAATCCGTTACCGTTACGACAGCGACGGGCGG > NC_000913/3620125‑3620289 | cgccgcgtggcgtccagccataGCGGCGAACTGGCGGTGGTGTATGACCGTAGTgg < 1:766357‑M2/34‑1 (MQ=255)cgccgcgtggcgtccagccataGCGGCGAACTGGCGGTGGTGTATGACCGTAGTgg > 2:766357‑M2/23‑56 (MQ=255) ccgcgtggcgtccaggcacGCGGCGAACTGGCGGTGGTGTATGACCGTAGTGGCAGACCGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCAGCGTAACACGGGCCGGCAggaaacccgggacag > 2:389047‑M2/20‑137 (MQ=255) GCGGCGAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCGGAAATCCGTTACCGTTACGACAGCGAcgggcgg < 1:155231‑M2/143‑1 (MQ=255) | GTGCGCTATGGCTGGACGCCACGCGGCGAACTGGCGGTGGTGTATGACCGTAGTGGCAAACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGGCCGGAAATCCGTTACCGTTACGACAGCGACGGGCGG > NC_000913/3620125‑3620289 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |