| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3944991 | NA (NA) | 4 (0.100) | 3/252 | NT | 25.9% | noncoding (1288/2904 nt) | rrlC | 23S ribosomal RNA |
| ? | NC_000913 | = 4038798 | 12 (0.300) | noncoding (1280/2905 nt) | rrlA | 23S ribosomal RNA | |||||
TAAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCGATGGGAAACAGGTTAATATTCCTGTACTTGGTGTTACTGCGAAGGG > NC_000913/4038659‑4038940 | tAAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGa > 1:454282/1‑143 (MQ=255) tgaCCATGCACCGAGGCTGCGGCCGCGACACTATGTGTGGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTCACATAAGTAACGATAAAGCGGGTGaa < 1:79513/141‑1 (MQ=255) aCCATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGaaaa < 1:755930/143‑1 (MQ=40) ccATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGGACCGAGAACGCGGGTGAAAAg > 2:454148/1‑143 (MQ=255) caggCACCGAGGCTGCGGCAGCGACACTATGTGTTGTTGGTTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCGGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGc < 1:532030/140‑1 (MQ=255) gCAGCGATGCTGAGGCAGCGCCGCTGGGTGTTGGTGGGGAGGGGAGCGTTCTGTAAGCCTGGCAAGGTGTGCTTTGAGGCAGGCTGGAGGAAGCAGAAGTGCGAATGCTGACAGAAGTAACGATAAAGCGGGTGAAACGCCCg < 2:734968/143‑1 (MQ=11) aCCGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTTCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGcttttcacccgct > 1:536622‑M2/1‑130 (MQ=255) aCCGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGcttttcacccgct > 2:113106‑M2/1‑130 (MQ=255) tGCGGCGGCGACACTATGTGTGGTGGGGTGGGGGGGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAAGGCTGACAAAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGaa < 2:476844/143‑1 (MQ=14) gACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGcttttcacccgctttatcgttacttatgtc > 1:783666‑M2/1‑113 (MQ=255) tATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGAGAAAAGCCCGCTCGCCGGAAGACCAAGGGATCCt > 2:567876/1‑143 (MQ=25) tgtgTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGt < 1:683346/143‑1 (MQ=35) tgttgtTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGCCCAAGGGTTCCTGTcc > 2:594672/1‑143 (MQ=17) gttgGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCTGGAAGACGAAGGGTTCGTGTCaaaag > 2:54485/1‑141 (MQ=11) gggggggaggggagcgTTCTGTAAGCGTGGGGAGGTGTGCTGTGAGGCATGCGGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGcttttcacccgctttatcgttacttatgtcagcattcgcactt > 2:358532‑M2/4‑100 (MQ=255) gTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCAGCTCGCCGGAAGACCAAGAGTTCCTGTCCAACGCTAAACGGGGCAggg > 2:148786/1‑143 (MQ=255) tgtgAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGAcccc > 2:587008/1‑143 (MQ=32) tgAAGGTGTGCTGTGAGGCAGGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGGGAACAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGCCAGGGTGAGTCGAACCCTa > 2:181907/1‑143 (MQ=11) cccgccggcgggcttttctcccgctttatcgttacttatgtcagcattcgcacttctgctacctccagcgtgcctcacagcacaccttcgcaggcttacagagcgctcccctacccaacaacgcataagcgtcgctgccgcag > 2:728802‑M2/8‑12 (MQ=255) cgcgtgcgtgcttttcacccgctttatcgttccttatgtcagcattcccaccacttctaccttcatcttgcctcacagcacaccttcgcaggcttacagaacgctcccctacccaacaacgcataagcgtcgctgccgcagct > 2:471475‑M2/6‑10 (MQ=255) gcgcgGGcttttcccccgctttatcgttacttatgtcagcattcgcacttctgatacctccagcatgcctcacagcacacctccgcaggcttacagaacgctcccctacccaacaacgcataagcgtcgctgccgcagcttcg > 2:76840‑M2/3‑7 (MQ=255) ggcGGGcttttcccccgctttatcgtgacttatgtcagcattcgcacttctgatacctccagcatgcctcacagcacaccttcgcaggcttacagaacgctcccctacccaacaacgcataagcgtcgctgccgcagcttcgg > 2:101096‑M2/2‑6 (MQ=255) cGGGcttttcacccgctttatcgttacttatgtcagcattcgcacttctgctacctccagcatgccccacagcacaccttcgcaggcttacagcacgctcccctacccaacaacgcataagcgtcgctgccgcagcttcggtg > 2:501743‑M2/1‑4 (MQ=255) gggcttttcacccgctttatctttacttatgtcagccttcccacttctgatacctccagcatgcctcacagcacaccttcgcacgcttacacaacgctcccctacccaacaacgcataagcgtcgctgccgcagcttcggtgc > 1:644719‑M2/1‑3 (MQ=255) gggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacctccagcatgcctcacagcacaccttcgcaggcttacagaacgctcccctacccaccaacgcataagcgtcgctgccgccgcttcggtgc < 1:679850‑M2/143‑141 (MQ=255) gggcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacctccagcatgcctcacagcacaccttcgcaggcttacagaacgctcccctacccaaccacgcatacgcgtcgctaccccaccttcgctgc < 1:371350‑M2/143‑141 (MQ=255) gggcttttcacccgctttaccgttacttatgtcagcattcgcacttctgatacctccagcatgcctcacagcacaccttcgcaggcttacagaacgctcccctacccaacaacgcataagcgtcgctgccgcagcttcggtgc > 1:253170‑M2/1‑3 (MQ=255) ggcttttcacccgctttatcgttacttatggcagcattcgcacttctgatacctccagcatgcctcacagcacaccttcgcaggcttacagaacgctcccctacccaacaacgcataagcgtcgctgccgcagcttcggtgca > 1:494057‑M2/1‑2 (MQ=255) gcttttcacccgctttatcgttacttatgtcagcattcgcacttctgatacctccagcatgcctcacagcacaccttcgcaggcttacagaacgctcccctacccaacaacgcccaagcgtcgctgccgccgcttcggtgcaa < 2:273201‑M2/143‑143 (MQ=255) | TAAACCATGCACCGAAGCTGCGGCAGCGACACTATGTGTTGTTGGGTAGGGGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCGATGGGAAACAGGTTAATATTCCTGTACTTGGTGTTACTGCGAAGGG > NC_000913/4038659‑4038940 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |