| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4240750 | 36 (0.900) | 6 (0.160) | 6/244 | NT | 14.6% | intergenic (+15/+29) | psiE/xylE | putative phosphate starvation‑inducible protein/D‑xylose:H(+) symporter |
| ? | NC_000913 | = 4240758 | 37 (1.000) | intergenic (+23/+21) | psiE/xylE | putative phosphate starvation‑inducible protein/D‑xylose:H(+) symporter | |||||
GCTTGATCATCGTCGATCATAAATCGCCACTGGATGTGTTGATCTACTCGGCTGCGATCCTGTTACTGGTGATCACCCTGTGGCTGTGTAATTCGAAACGGCTGAAGCGGGAGTAAAAAGTCAGCACGCCGAAATGGCGCGGCGTGCTGGACAGGAAGATTACAGCGTAGCAGTTTGTTGTGTTTTCTTCGTTTCCGGTTCCCAGAGCGCTTCCAGCTCCTCAAGGGTTTTACCTTTGGTTTCCGGGACAAATTTCCACATAAACAGTGCTGCC > NC_000913/4240620‑4240893 | gcTTGACCATCGTCGATCATAACTCGCCACTGGATGTGTTGATCTACTCGGCTGCGATCCTGTTACTGGTGATCACCCTGTGGCTGTGTAATTCGAAACGGCTGAAGCGGGAGTAAAAAGTCAGCACGCCGAAATGGCGcggc > 1:31692‑M2/1‑139 (MQ=255)gcTGGATCATCGTCGATCATAAAGCGCCACTGGATGTGTTGATCTACTCGGCTGCGATCCTGTTACTGGTGATCACCCTGTGGCTGTGTAATTCGAAACGGCTGAAGCGGGAGTAAAAAGTCAGCACGCCGAAATGGCGcggc > 1:154609‑M2/1‑139 (MQ=255) gATCATCGTCGATCATAAATCGCCACTGGATGTGTTGATCTACTCGGCTGCGATCCTGTTACTGGTGATCACCCTGTGGCTGTGTAATTCGAAACGGCTGAAGCGGGAGTAAAAAGTCAGCACGCCGAAATGGCGcggcgtgc < 2:738920‑M2/143‑9 (MQ=255) gATCATCGTCGATCATAAATCGCCACTGGATGTGTTGATCTACTCGGCTGCGATCCTGTTACTGGTGATCACCCTGTGGCTGTGTAATTCGAAACGGCTGAAGCGGGAGTAAAAAGTCAGCACGCCGAAATGGCGcggcgtgc > 2:328823‑M2/1‑135 (MQ=255) catcGTCGATCATAAATCGCCACTGGATGTGTTGATCTACTCGGCTGCGATCCTGTTACTGGTGATCACCCTGTGGCTGTGTAATTCGAAACGGCTGAAGCGGGAGTAAAAAGTCAGCACGCCGAAATGGCGCGGCGTGCTgg > 1:305290/1‑143 (MQ=255) gtcgATCATAAATCGCCACTGGACGTGTTGATCTACTCGGCTGCGATCCTGTTACTGGTGATCACCCTGTGGCTGTGTAATTCGAAACGGCTGAAGCGGGAGTAAAAAGTCAGCACGCCGAAATGGCGCGGCGTGCTGGACAg < 1:635662/143‑1 (MQ=255) tcgATCATAAATCGCCACTGGATGTGTTGATCTACTCGGCTGCGATCCTGTTACTGGTGATCACCCTGTGGCTGTGTAATTCGAAACGGCTGAAGCGGGAGGAAAAAGTCAGCACGCCGAAATGGCGCGGCGTGCTGGACAgg < 1:480096/143‑1 (MQ=255) aaTCGCCACTGGATGTGTTGATCTACTCGGCTGCGATCCTGTTACTGGTGATCACCCTGTGGCTGTGTAATTCGAAACGGCTGAAGCGGGAGTAAAAAGTCAGCACGCCGAAATGGCGCGGCGTGCTGGACAGGAAGATTACa < 1:168074/143‑1 (MQ=255) aTCGCCACTGGATGTGTTGATCTACTCGGCTGCGATCCTGTTACTGGTGATCACCCTGTGGCTGTGTAATTCGCAACGGCTGAAGCGGGAGTAAAAAGTCAGCACGCCGAAATGGCGCGGCGTTCTGGGCAGGAAGATTACAg > 1:264289/1‑143 (MQ=255) aCTGGATGTGTTGATCTACTCGGCTGCGATCCTGTTACTGGTGATCACCCTGTGGCTGTGTAATTCGAAACGGCTGAAGCGGGAGTAAAAAGTCAGCACGCCGAAATGGCGCGGCGTGCTGGACAGGAAGATTACAGCGTAGc > 1:546914/1‑143 (MQ=255) cTGGATGTGTTGATCTACTCGGCTGCGATCCTGTTACTGGTGATCACCCTGTGGCTGTGTAATTCGAAACGGCTGAGGCGGGAGGAAAAAGTGAGCACGCCGAAATGGCGCGGCGTGCAGGACAGGAAGATTACAGCGTAGCa > 2:614443/1‑143 (MQ=255) gtTGATCTACTCGGCTGCGATCCTGTTACTGGTGATCACCCTGTGGCTGTGTAATTCGAAACGGCTGAAGCGGGAGTAAAAAGTCAGCACGCCGAAATGGCGCGGCGAGCTAGACAGCGAGATTACAGCGTAGCAGTttgctg > 2:6984/1‑143 (MQ=255) gtTGATCTACTCGGCTGCGATCCTGTTACTGGTGATCACCCTGTGGCTGTGTAATTCGAAACGGCTCAAGCGGGAGAAAAAAGTCAGCACGCCGAAATGGCGCGGCGTGCTGGACAGGAAGATTCCAGCGTAGCAGTttgttg > 2:357291/1‑143 (MQ=255) tACTCTGCTGCCATCCCGCTACTGGTGATCACCCTGCGGTTGTGTAATTCGAAACGGCTGAAGCGGGAGTAAAAAGTCAGCACGCCGAAATGGCGCGGCGTGCTGGACAGGAAGATTACAGCGTAGCAGTTTGTAGTGTTttc < 1:711960/143‑1 (MQ=255) ggCTGCGATCCTGTTACTGGTGATCACCCTGTGGCTGTGTAATTCGAAACGGCTGAAGCGGGAGAAAAAAGACAGCACGCCGAAATGGCGCGGCGTGCTGGAAAGGAAGATTAAAACGTAGCAGTTAGTTGAGTTTTCTTCga > 2:376124/1‑142 (MQ=255) cTGCGAGCCTGTTACTGGTGATCACCCTGTGGCTGTGTAATGCGAAACGGCTGAAGCGGGAGTAAAAAGTCAGCACGCCGAAATGGCGCGGCGTGCTGGACAGGAAGATTACAGCGTAGCAGTTTGTTGTGTTTTCTTCGttt < 1:660052/143‑1 (MQ=255) gCGATCCTGTTACTGGTGATCTCTCTGTGGCTGTGTAATTCGAAACGGCTGAAGCGGGAGTAAAAAGTCAGCACGCCGAAATGGCGCGGCGTGCTGGACAGGAAGATTACAGCGTAGCAGTTTGTTGTGTTTTCTTCGTTTcc < 2:376946/143‑1 (MQ=255) ctgATGCTGTTACTGGTTATCACCCTGTGGCTGTGTAATTCGAAGCGGCTGAAGCGGGAGTAAAAAGTCAGCACGCCGAAATGGCGCGGCGTGCTGGACAGGAAGATTACAGCGTAGCAGTTTGTTGTGTTTTCTTCGTTTcc < 2:546020/141‑1 (MQ=255) cGATCCTGTTACTGGTGATCACCCTGTGGCTGTGTAATTCGAAACGGCTGAAGCGGGAGTAAAAAGTCAGCACGCCGAAATGGCGCGGCGTGCTGGACAGGAAGATTACAGCGTAGCAGTTTGTTGTGTTTTCTTCGTTTCCg > 1:194293/1‑143 (MQ=255) ccTGTGACTGGTGATCACCCTGTGGCTGTGTAATTGGAAACGGCTGGAGCGGGAGTAAAAAGTCAGCACGCCGAAATGGCGCGGCGTGCTGGACAGGAAGATTACAGCGTAGCAGTTTGTTGTGTTTTCTTCGTTTCCGGTTc < 2:170056/143‑1 (MQ=255) ttACTGGTGATCACCCTGTGGCTGTGTAATTCGAAACGGCTGAAGCGGGAGTAAAAAGTCAGCACGCCGAAATGGCGCGGCGTGCTGGACAGGAAGATTACAGCGTAGCAGTTTGTTGTGTTTTCTTCGTTTCCGGTTCCCag < 1:630831/143‑1 (MQ=255) tACTGCTGGCCATCCTGTGGCTGTCGAATTCGAAACGGCTGAAGCGGGACGAAAAAGTCAGCACTCCGAAATGGCTCGGCTTGTTGTACAGGAACATTACAGCGTAGCAGTTTGTTGTGTTTTCTTCGTTTCCGGTTCCCaga < 2:324154/143‑1 (MQ=255) aCTGGTGATCACCCTGTGGCTGTGTAATTCGAAACGGCTGAAGCGGGAGTAAAAAGTCAGCACGCCGAAATGGCGCGGCGTGCTGGACAGGAAGATTACAGCGTAGCAGTTTGTTGTGTTTTCTTCGTTTCCGGTTCCCagag > 1:241678/1‑143 (MQ=255) ccTGTGGCTGTGTAATTCGAAACGGCTGAAGCGGGAGTAAAAAGTCAGCACGCCGAAATGGCGCGGCGTGCTGGACAGGAAGATTACAGCGTAGCAGTTTGTTGTGTTTTCTTCGTTTCCGGTTATGAGAGCGCTTCCAGctc > 1:208345/1‑143 (MQ=255) tgtAATTCGAAACGGCTGAAGCGGGCGACAATAGTTGGAGAGTCGTAATGGCGCGGCGTGCTGGACTGTTCTTTTGCATCGTTGCAGTTCCTTTTGCATGCGGCGTTTCCGGGTCCCAGTGCGCTTCCAGCTCCTCCAGGGtt > 2:278887/1‑143 (MQ=255) tgtAATTCGAAACGGCTGAAGCGGGAGTAAAAAGTCAGCACGCCGAAATGGCGCGGCGTGCTGGACAGGAAGATTACAGCGTAGCAGTTTGTTGTGTTTTCTTCGTTTCCGGTTCCCAGAGCGCTTCCAGCTCCTCAAGGAtt > 1:238002/1‑143 (MQ=255) tgtAATTCGAAACGGCTGAAGCGGGAGTAAAAAGTCAGCACGCCGAAATGGCGCGGCGTGCTGGACAGAAAGATTACAGCGTAGCAGTTTGTTGTGTTTTCTTCGTTTCCGGTTCCCAGAGCGCTTCCAGCTCCTCAAGGGtt < 1:413630/143‑1 (MQ=255) gtAATTCGAAACGGCTGAAGCGGGAGTAAAAAGTCAGCACGCCGAAATGGCGCGGCGTGCTGGACAGGAAGATTACAGCGTAGCAGTTTGTTGTGTTTTCTTCGTTTCCGGTTCCCAGAGCGCTTCCAGCTCCTCAAGGGttt > 2:296368/1‑143 (MQ=255) aaTTCGAAACGGCTGAAGCGGGAGTAAAAAGTCAGCACGCCGAAATGGCGCGGCGTGCTGGACAGGAAGATTACAGCGTAGCAGTTTGTTGTGTTTTCTTCGTTTCCGGTTCCCAGAGCGCTTCCAGCTCCTCAAGGGGTTTa > 1:279618/1‑143 (MQ=255) ttCGAAACGGCTGAAGCGGGAGTAAAAAGTCAGCACGCCGAAGTGGCGCGGCGTGCTGGACAGGAGGATTACAGCGTAGCAGTTTGTTGTGGTTTCTTCGTTGCCGGTTCCCAGAGCGCTTCCAGCTCCTCAAGGGCTTTccc > 1:126141/1‑143 (MQ=255) tCGAAACGGCTGAAGCGGGAGTAAAAAGTCAGCACGCCGAAATGGCGCGGCGTGCTGGACAGGAAGATTACAGCGTAGCAGTTTGTTGTGTTTTCTTCGTTTCCGGTTCCCAGAGCGCTTCCAGCTCCTCAAGGGTTTTACCt > 2:440366/1‑143 (MQ=255) gAAGCGGCTGAAGCGGGAGTAAAAAGTGAGCACGCCGAAATGGCGCGGCGTGCTGGACAGGAAGATTACAGCGTAGCAGTTTGTTGTGTTTTCTTCGTTTCCGGTTCCCAGAGCGCTTCCAGCTCCTCAAGGGTTTTACCttt < 1:563105/143‑1 (MQ=255) gAAACGGCTGAAGCGGGAGTAAAAAGTCAGCACGCCGAAATGGCGCGGCGTGCTGGACAGGAAGATTACAGCGTAGCAGTTTGTTGTGTTTTCTTCGTTTCCGGTTCCCAGAGCGCTTCCAGCTCCTCAAGGGTTTTACCttt < 2:194293/143‑1 (MQ=255) gAAGCGGGTGTTAAAAGTCAGCACGCCGAAATGGCGCGGCGTGCTGGACAGGAAGATTACAGCGTAGCAGTTTGTTGTGTTTTCTTCGTTTCCGGTTCCCAGAGCGCTTCCAGCTCCTCAAGGGTTTTACCTTTGGTTTCCgg < 1:228820/143‑1 (MQ=255) aGCGGGAGTAAAAAGTCAGCACGCCGAAATGGCGCGGCGTGCTGGACAGGAAGATTACAGCGTAGCAGTTTGTTGTGTTTTCTTCGTTTCCGGTTCCCAGAGCGCTTCCAGCTCCTCAAGGGTTTTACCTTTGGTTTCCGGGa < 1:755388/143‑1 (MQ=255) gCGGGAGTAAAAAGTCAGCACGCCGAAATGGCGcggcgtgctgactttttactcccgcttctgccgtttcgaattacacagccacacggtgatcaccagtaacaggatcgcagccgagtagatcaacacatccagtcgcaact < 1:635670‑M2/143‑111 (MQ=255) cGGGAGTAAAAAGTCAGCACGCCGAAATGGCGcggcgtgctgactttttactcccgcttcagccgtttcgaattacacagccacagggtgatcaccagtaacaggatcgcagccgagtagagcaacacacccagaggcgactt < 2:653534‑M2/143‑112 (MQ=255) cGGGAGTAAAAAGTCAGCACGCCGAAATGGCGCGGCGTGCTGGACAGGAAGATTACAGCGTAGCAGTTTGTTGTGTTTTCCTCGTTTCCGGTTCCCAGAGCGCTTCCAGCTCCTCAAGGGTTTTACCTTTGGGTTCCGGGACa > 1:448275/1‑143 (MQ=255) aaagggcAGCACGCCGTAATGGCGCGGCGTGCTGGACAGGAAGATTACAGCGTAGCAGTTTGTTGTGTTTTCTTCGTTTCCGGTCCCCAGCGCGCTGCCAGCTCCTCAAGGGTTTTACCTTTGGTTTCCGGGACAAATTTCca < 2:429753/137‑1 (MQ=255) aaaGTCAGCACGCCGAAATGGCGCGGCGTGCTGGACAGGAAGATTACAGCGTAGCAGTTTGTTGTGTTTTCTTCGTTTCCGGTTCCCAGAGCGCTTCCAGCTCCTCAAGGGTTTTACCGTTGGGTTCCGGGACGGATTTCcac > 1:652537/1‑143 (MQ=255) aGCACGCCGAAATGGCGcggcgtgctgactttttactcccgcttcagccgtttcgaattacacagccacagggtgatcaccagtaacaggatcgcagccgagtagatcaacacatccagtggcgatttatg < 1:641489‑M2/131‑115 (MQ=255) aGCACGCCGAAATGGCGcggcgtgctgactttttactcccgcttcagccgtttcgaattacacagccacagggtgatcaccagtaacaggatcgcagccgagtagatcaacacatccagtggcgatttatg > 2:641489‑M2/1‑17 (MQ=255) gcgcgccgcAAGGGCGCGGCGTGCTGGACAGGAAGATTACGGCGTAGCAGTTTGTTGTGTTTTCTTCGTTTCCGGTTCCCAGAGCGCTTCCAGCTCCTCAAGGGTTTTACCTTTGGTTTCCGGGACAAATTTCCACATAAACa < 2:602300/140‑1 (MQ=255) gCACGCCGAAATGGCGcggcgtgctgactttttactcccgcttcagccgtttcgaattacacagccacagggtgatcaccagtaacaggatcgcagccgagtagatcaacacacccagtggcgatttatgatcgacgatgatc < 1:291525‑M2/143‑128 (MQ=255) gCACGCCGAAATGGCGCTGCGTGCTGGACAGGAAGATTACAGCGTAGCAGTTTGTTGTGTTTTCTTCGTTTCCGGTTCCCAGAGCGCTTCCAGCTCCTCAAGGGTTTTACCTTTGGTTTCCGGGACAAATTTCCACATAAACa < 2:695693/143‑1 (MQ=255) cACGCCGAAATGGCGCGGCGTGCTGGACAGGAAGATTACAGCGTAGCAGTTTGTTGTGTTTTCTTCGTTTCCGGTTCCCAGAGCGCTTCCAGCTCCTCAAGGGTTTTACCTTTGGTTTCCGGGACAAATTTCCACATAAACac < 1:296368/143‑2 (MQ=255) aCGCCGAAATGGCGcggcgtgctgactttttactcccgcttcagccgtttcgcatgacacagccacagggtgatcaccagtaacaggatcgcagccgagtagatcaacacatccagtggcgatttatgatcgacgatgatcaa < 2:323595‑M2/143‑130 (MQ=255) aaaTGGCGCGGCGTGCTGGACAGGAAGATTACAGCGTAGCAGTTTGTTGTGTTTTCTTCGTTTCCGGTTCCCAGAGCGCTTCCAGCTCCTCAAGGGTTTTACCTTTGGTTTCCGGGACAAATTTCCACATAAACAGTGCTGcc < 1:65102/143‑1 (MQ=255) aaaTGGCGCGGCGTGCTGGACAGGAAGATTACAGCGTAGCAGTTTGTTGTGTTTTCTTCGTTTCCGGTTCCCAGAGCGCTTCCAGCTCCTCAAGGGTTTTACCTTTGGTTTCCGGGACAAATTTCCACATAAACAGTGCTGcc < 1:738920/143‑1 (MQ=255) | GCTTGATCATCGTCGATCATAAATCGCCACTGGATGTGTTGATCTACTCGGCTGCGATCCTGTTACTGGTGATCACCCTGTGGCTGTGTAATTCGAAACGGCTGAAGCGGGAGTAAAAAGTCAGCACGCCGAAATGGCGCGGCGTGCTGGACAGGAAGATTACAGCGTAGCAGTTTGTTGTGTTTTCTTCGTTTCCGGTTCCCAGAGCGCTTCCAGCTCCTCAAGGGTTTTACCTTTGGTTTCCGGGACAAATTTCCACATAAACAGTGCTGCC > NC_000913/4240620‑4240893 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |