| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 1,778,375 | A→G | 12.4% | intergenic (+28/+15) | ydiO → / ← ydiP | putative acyl‑CoA dehydrogenase/putative DNA‑binding transcriptional regulator YdiP |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,778,375 | 0 | A | G | 12.4% | 86.8 / 6.1 | 44 | intergenic (+28/+15) | ydiO/ydiP | putative acyl‑CoA dehydrogenase/putative DNA‑binding transcriptional regulator YdiP |
| Reads supporting (aligned to +/- strand): ref base A (13/25); new base G (4/2); total (17/27) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.86e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.16e-01 | |||||||||||
CGTCTCCCGCTTCTGGCGTGATGTCCGTTGTGAACGTATCGGCGGCGGTACAGACGAAATTATGATTTACGTAGCAGGTCGGCAGATCCTGAAAGACTATCAGAACAAATAATCTGCAGGCGGCGCAGCTTCTTAACAAACTGCGCCGCCAGATTTATCCAACAAGACTTACCGGTTGAGGAAATTCAGATAGGATTTCTTGTTCCGCAAAACAGTTTTTAAATTGTCTACGGTAATCGCTGGGCGAACAACCGACATGGCGCAAAAACAGTTTGGCAAA > NC_000913/1778236‑1778515 | cgTCTCCCGCTTCTGGCGTGATGTCCGTTGTGAACGTATCGGCGGCGGTACAGACGAAATTATGATTTACGTAGCAGGTCGGCAGATCCTGAAAGACTATCAGAACAAATAATCTGCAGGCGGCGCAGCTTCTTAACAAACTg < 1:266584/143‑1 (MQ=255) gTCTCCCGCGTCTGGCGTGATGACCGTTGTGAGCGTACGGGCGGCGGTACAGACGAAATTATGATTTACGTACCAGGTCGGCAGATCCTGAAAGACTATCAGAACAAATAATCTGCAGGCGGCGCAGCTTCTTAACAAACTgc < 2:10755/143‑1 (MQ=255) acccGCTGCGGGCGTGAGGTCCGTGGTGAACGTATCGGCGGCGGTACAGACGAAATTATGATTTACGTAGCAGGTCGGCAGATCCTGAAAGACTATCAGAACAAATAATCTGCAGGCGGCGCAGTTTGTTAAGAAGCTGcgcc < 1:730870/142‑1 (MQ=255) ccGCTTCTGGCGTGATGTCCGTTGTGAACGTATCGGCGGCGGTACAGACGAAATTATGATTTACGTAGCAGGTCGGCAGATCCTGAAAGACTATCAGAACAAATAATCTGCAGGCGGCGCAGCTTCTTAACAAACTGcgccgc > 2:745529/1‑143 (MQ=255) gggCGTGGTGTGTGTTGTGAACGTTGGGGCGGGGCTCCCTCCCGAATTATGATTTACGTAGCAGGTCGGCAGATCCTGAAAGATTATCAGAACAAATAATCTGCAGGCGGCGCAGCTTCTTAACAAACTGCGCCGCCAGAttt < 2:762923/142‑1 (MQ=255) gtacGTTGGGAACGTAGCGGCGGCGGTACAGACGAAATTATGATTTACGTAGCAGGTCGGCAGATCCTGAAAGACTATCAGAATTAATAATCTTTTGGCGGCGCAGCTTCTTAACAAACTGCGCCGCCAGATTTATCcaacaa < 1:515048/140‑1 (MQ=255) tCCGTTGTGAACGTATCGGCGGCGGTACAGACGAAATTATGATTTACGTAGCAGGTCGGCAGATCCTGAAAGACTATCAGAACAAATAATCTGCAGGCGGCGCAGCTTCTTAACAAAATGCGCCGCCAGATTTACCCAACAAg > 2:101487/1‑143 (MQ=255) gtgAACGCATCGGCGGCGGTACAGACGAAATTACGATTTACGTAGCAGGTCGGCAGAGCCTGAAAGACTATCAGAACAAATAATCTGCAGGCGGCGCAGCTTCTCAACAAACTGCGCCGCCAGATTTATCCAACAAGACTTAc < 1:63993/143‑1 (MQ=255) gAACGTATCGGGGGCGGTACAGACTAAATTATGATTTACGTAGCAGGTCGGCAGATCCTGAAAGACTATCAGAACAAATGATCTGCAGGCGGCGCAGCTTCTTAACAAACTGCGCCGCCAGATTTATCCAACAAGACTTACCg < 2:134144/143‑1 (MQ=255) cGTATCGGCGGCGGTACAGACGAAATTATGATTTACGTAGCAGGTCGGCAGATCCTGAAAGACTATCAGAACAAATAATCTGCAGGCGGCGCAGCTTCTTAACAAACTGCGCCGCCAGATTTATCCAACAAGACTTACCGGtt < 1:353549/143‑1 (MQ=255) tATCGGCGGCGGTACAGACGAAATTATGATTTACGTAGCAGGTCGGCAGATCCTGAAAGACTATCAGAACAAATAATCTGCAGGCGGCGCAGCTTCTTAACAAACTGCGCCGCCAGATTTATCCAACAAGACTTACCGGTTGa > 1:403898/1‑143 (MQ=255) tCGGCGGCGGTACAGACGACCTTATGATTTACGTAGCAGGTCGGCAGATCCTGAAAGACTATCAGAACAAATAATCTGCAGGCGGCGCAGCTTCTTAACAAACTGCGCCGCCAGATTTATCCAACAAGACTTACCGGTTGAgg < 2:124529/143‑1 (MQ=255) cggcggcggTACAGACGAAATTATGATTTACGTAGCAGGTCGGCAGATCCTGAAAGACTATCAGAACAAATAATCTGCAGGCGGCGCAGCTTCTTAACAAACTGCGCCGCCAGATTTATCCAACAAGACTTACCGGTTGAGGa < 1:677302/143‑1 (MQ=255) tACAGACGAAATTATGATTTACGTAGCAGGTCGGCAGATCCTGAAAGACTATCAGAACAAATATCCTGCAGATTGCCCAGCTTCTTTACATATTTCGCCGCCAGATTTATCCAACAAGTCTTACCGGTTGAGGAAATTCAGAt < 1:365437/143‑1 (MQ=255) aCAGACGAAATTATGATTTACGTAGCAGGTCGGCAGATCCTGAAAGACTATCAGAACAAATAATCTGCAGGCGGCGCAGCTTCTTAACAAACTGCGCCGCCAGATTTATCCAACAAGACTTACCGGTTGAGGAAATTCGGATa > 1:50168/1‑143 (MQ=255) aCGAAATTATGATTTACGTAGCAGGTCGGCAGATCCTGAAAGACTATCAGAACAAATAATCTGCAGGCGGCGCAGCTTCTTAACAAACTGCGCCGCCAGATTTATCCAACAAGACTTACCGGTTGAGGAAATTCAGATAGGAt > 1:94413/1‑143 (MQ=255) gAAATTATGATTTACGTAGCAGGTCGGCAGATCCTGAAAGACTATCAGAACAAATAATCTGCAGGCGGCGCAGCTTCTTAACAAACTGCGCCGCCAGATTTATCCAACAAGACTTACCGGTTGAGGAAATTCAGATAGGAttt < 2:477215/143‑1 (MQ=255) gATTTACGTAGCAGGTCGGCAGATCCTGAAAGACTATCAGAACAAATAATCTGCAGGCGGCGCAGCTTCTTAACAAACTGCGCCGCCAGATTTATCCAACAAGACTTACCGGTTGAGGAAATTCAGATAGGATTTCTTGTTcc > 2:474394/1‑143 (MQ=255) cGTAGCAGGTCGGCAGATCCTGAAAGACTATCAGAACAAATAATCTGCAGGCGGCGCAGCTTCTTAACAAACTGCGCCGCCAGATTTATCCAACAAGACTTACCGGTTGAGGAAATTCAGATAGGATTTCTTGTTCCGCaaaa < 1:592341/143‑1 (MQ=255) gaGCACGTCGGCAGATCCTGAAAGAGTATCAGAACAAATAACCTGCAGGCGGCTCAGCTTCTTAACAAACTGCGCCGCCAGATTTATCCAACAAGACTTACCGGTTGAGGAAATTCAGATAGGATTTCTTGTTCCGCAAAACa < 1:60257/142‑1 (MQ=255) ggTCGGCAGATCCTGAAAGACTATCAGAACAAATAATCTGCAGGCGGCGCAGCTTCTTAACAAACTGCGCCGCCAGATTTATCCAACAAGACTTCCCGGTTGAGGAAATTCAGATAGGATTTCTTGTTCCGCAACACAGtaca > 1:22036/1‑140 (MQ=255) cGGCAGATCCTGAAAGACTATCAGAACAAATAATCTGCAGGCGGCGCAGCTTCTTAACAAACTGCGCCGCCAGATTTATCCAACAAGACTTACCGGTTGAGGAAATTCAGATAGGATTTCTTGTTCCGCAAAACAGTTTTTaa < 1:388887/143‑1 (MQ=255) gCAGATCCTGAAAGACTATCAGAACAAATAATCTGCAGGCGGCGCAGCTTCTTAACAAACTGCGCCGCCAGATTTATCCAACAAGACTTACCGGTTGAGGAAATTCAGATAGGATTTCTTGTTCCGCAAAACAGTTTTTAAAt < 1:409691/143‑1 (MQ=255) gCAGATCCTGAAAGACTATCAGAACAAATAATCTGCAGGCGGCGCAGCTTCTTAACAAACTGCGCCGCCAGATTTATCCAACAAGACTTACCGGTTGAGGAAATTCAGATAGGATTTCTTGTTCCGCAAAACAGTTTTTAAAt < 1:409710/143‑1 (MQ=255) gCAGATCCTGAAAGACTATCAGAACAAATAATCTGCAGGCGGCGCAGCTTCTTAACAAACTGCGCCGCCAGATTTATCCAACAAGACTTACCGGTTGAGGAAATTCAGATAGGATTTCTTGTTCCGCAAAACAGTTTTTAAAt > 2:428135/1‑143 (MQ=255) aTCCTGAAAGACTATCAGACCAAATAATCTGCAGGCGGCGCAGCTTCTTAACAAACTGCGCCGCCAGATTTATCCAACAAGACTTACCGGTTGAGGAAATTCAGATAGGATTTCTTGTTCCGCAAAACAGTTTTTAAATTGTc < 2:693145/143‑1 (MQ=255) cTGTAATACTATCAGATCTAATATTCTGCTGTCGGCGCAGCTTCTTAACAAACTGCGCCGCCAGATTTATTCATCAAGACTTATCGGTTGAGGAAATTCAGATAGGATTTCTTGTTCCGCAAAACAGTTTTTAAATTGTCTAc < 2:190661/143‑1 (MQ=255) tGAAAGACTATCAGAACAAATAATCTGCAGGCGGCGCAGCTTCTTAACAAACTGCGCCGCCAGATTTATCCAACAAGACTTACCGGTTGAGGAAATTCAGATAGGATTTCTTGTTCCGCAAAACAGTTTTTAAATTGTCTACg > 1:506740/1‑143 (MQ=255) tCAGAACAAATAATCTGCAGGCGGCGCAGCTTCTTAACAAACTGCGCCGCCAGATTTATCCAACAAAACTTACAAGTTGAGGAAAATCAGAAAGGATTTGTTGTTCCGCAAAACAGATTTTAAATTGACGAAGGTAATCGCTg > 2:22762/1‑143 (MQ=255) cAAAAAAACTGCGGGCGGCGCAGCTTCTGAACAAACTGCGCCGCCAGATTTATCCAACAAGACTTACCGGTGGAGGAAATTCAGATAGGATTTCTTGTTCCGCAAAACAGTTTTTAAATTGTCTACGGTAATCGCTGGGCGaa < 1:566388/143‑1 (MQ=255) taatCTGCAGGCGGCGCAGCTTCTTAACAAACTGCGCCGCCAGATTTATCCAACAAGACTTACCGGTTGAGGCAATTCAGATAGGATTTCTTGTTCCGCAAAACAGTTTTTAAATTGTCTACGGTAATCGCTGGGCGaacaac > 2:661302/1‑143 (MQ=255) tggcggcGCAGCTTCTTAACGAACTGCGGCGCGAGCAACGACAAACAAGGCTTACCGGTTGAGGAAATGCAGATAGGATTTCTTGTTCCGCAAAACAGTTTTGAAATTGTCTACGGTAATCGCTGGGCGAACAACCGACATgg < 2:163275/142‑1 (MQ=255) gcggcgCAGCTTCTTAACAAACTGCGCCGCCAGATTTATCCAACAAGACTTACCGGTTGAGGAAATTCAGATAGGATTTCTTGTTCCGCAAAACAGTTTTTAAATTGTCTACGGTAATCGCTGGGCGAACAACCGACATGgcg < 1:124459/143‑1 (MQ=255) cggcgCAGTTTGTTAAGAAGCTGCGCCGCCAGATTTATCCAACAAGACTTACCGGTTGAGGAAATTCAGATAGGATTTCTTGTTCCGCAAAACAGTTTTTAAATTGTCTACGGTAATCGCTGGGCGAACAACCGACATGgcgc > 2:729318/1‑143 (MQ=255) cggcgCAGTTTGTTAAGAAGCTGCGCCGCCAGATTTATCCAACAAGACTTACCGGTTGAGGAAATTCAGATAGGATTTCTTGTTCCGCAAAACAGCTTTTAAATTGTCTACGGTAATCGCTGGGCGAACAACCGACATGgcgc > 2:504559/1‑143 (MQ=255) cggcgCAGCTTCTTAACAAACTGCGCCGCCAGATTTATCCAACAAGACTTACCGGTTGAGGAAATTCAGATAGGATTTCTTGTTCCGCAAAACAGTTTTTAAATTGTCTACGGTAATCGCTGGGCGAACAACCGACATGgcgc < 1:35902/143‑1 (MQ=255) ggcgCAGTTTGTTAAGAAGCTGCGCCGCCAGATTTATCCAACAAGACTTACCGGTTGAGGAAATTCAGATAGGATTTCTTGTTCCGCAAAACAGTTTTTAAATTGTCTACGGTAATCGCTGGGCGAACAACCGACATGGCGCa > 2:180207/1‑143 (MQ=255) ggcgCAGCTTCTTAACAAACTGCGCCGCCAGATTTATCCAACAAGACTTACCGGTTGAGGAAATTCAGATAGGATTTCTTGTTCCGCAAAACAGTTTTTAAATTGTCTACGGTAATCGCTGGGCGAACAACCGACATGGCGCa < 2:532628/143‑1 (MQ=255) cgcgcTGCTTCTGAACAAACTGCGCCGCCATATTTATCCAACTATACTTACCGGTTGAGGAGACTCAGATAGGATTTCTTGTTCCGCAAAATAGTTTTTAAATTGTCTACGGTAAGCGCTGGGCGAACAACCGACATGGCGCa < 2:183650/142‑1 (MQ=255) gcgcAGTTTGTTAAGAAGCTGCGCCGCCAGATTTATCCAACAAGACTTACCGGTTGAGGAACTTCAGCTAGGATTTCTTGTTCCGCAAAAAAGTTTTTAAATTGTCTACGGTAATCGCTGGGCGAACAACCGACATGGCGCag > 2:396682/1‑142 (MQ=255) tcttAGCAAGCCGCGCCGCCACATTTATCCAACAAGACTTCCCGGATGAGGAAATGCAGATAGGATTTCTTGTTCCGCAAAACAGTTTTTAAATGGTCTACGGTAATCGCTGGGCGAACAACCGACATGGCGCAAAAACAGtt < 2:572185/143‑1 (MQ=255) ttAACAAACTGCGCCGCCAGATTTATCCAACAAGACTTACCGGTTGAGGAAATTCAGATAGGATTTCTTGTTCCGCAAAACAGTTTTTAAATTGTCTACGGTAATCGCTGGGCGAACAACCGACATGGCGCAAAAACAGTTTg < 1:549638/143‑1 (MQ=255) aaCAAACTGCGCCGCCAGATTTATCCAACAAGACTTACCGGTTGAGGAAATTCAGATAGGATTTCTTGTTCCGCAAAACAGTTTTTAAATTGTCTACGGTAATCGCTGGGCGAACAACCGACATGGCGCAAAAACAGTTTGGc > 1:736348/1‑143 (MQ=255) aaCAAACTGCGCCGCCAGATTTATCCAACAAGACTTACCGGTTGAGGAAATTCAGATAGGATTTCTTGTTCCGCAAAACAGTTTTTAAATTGTCTACGGTAATCGATGAGCGAGCAAGCGACATGGCGCAAAAACAGTTTGGc > 1:610079/1‑143 (MQ=255) aaaCTGCGCCGCCAGATTTATCCAACAAGACTTACCGGTTGAGGAAATTCAGATAGGATTTCTTGTTCCGCAAAACAGTTTTTAAATTGTCTACGGTAATCGCTGGGCGAACAACCGACATGGCGCAAAAACAGTTTGGCaaa < 1:428135/143‑1 (MQ=255) | CGTCTCCCGCTTCTGGCGTGATGTCCGTTGTGAACGTATCGGCGGCGGTACAGACGAAATTATGATTTACGTAGCAGGTCGGCAGATCCTGAAAGACTATCAGAACAAATAATCTGCAGGCGGCGCAGCTTCTTAACAAACTGCGCCGCCAGATTTATCCAACAAGACTTACCGGTTGAGGAAATTCAGATAGGATTTCTTGTTCCGCAAAACAGTTTTTAAATTGTCTACGGTAATCGCTGGGCGAACAACCGACATGGCGCAAAAACAGTTTGGCAAA > NC_000913/1778236‑1778515 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |