| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 1,834,846 | T→C | 9.9% | R13R (CGT→CGC) | ydjZ → | DedA family protein YdjZ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,834,846 | 0 | T | C | 9.9% | 94.8 / 3.8 | 41 | R13R (CGT→CGC) | ydjZ | DedA family protein YdjZ |
| Reads supporting (aligned to +/- strand): ref base T (16/20); new base C (2/2); total (19/22) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.63e-02 | |||||||||||
AAACGTGGTGAAGTTAAATTCAAAGGCAATGCCTCAGTTCTCCCGGCGGATAACACGCTGGCAACGGTTACCTTTAAAATCGCCGAATAAAGCCAGGATAAAGGATGATGATGATGCAATCGCGAAAAATCTGGTACTACCGTATAACCCTCATCATCCTGTTGTTCGCTATGCTGCTGGCATGGGCGCTGCTTCCCGGCGTCCATGAGTTTATCAATCGCAGCGTTGCGGCGTTTGCCGCCGTGGACCAACAGGGTATAGAACGCTTTATTCAGTCTTACGGC > NC_000913/1834704‑1834987 | aaaCGTGGTGAAGTTAAATTCAAAGGCAATGCCTCAGTTCTCCCGGCGGATAACACGCTAGCAACGGTTACCTTTAAAATCGCCGAATAAAGCCAGGGTAAAGGATGATGATGATGCAATCGCGAAAAATCTGGTACTACCGt > 1:206108/1‑143 (MQ=255)aaaCGTGGTGAAGTTAAATTCAAAGGCAATGCCTCAGTGCTCACGGCGGATAACACGCTGGCAACGGTTACCTTTAAAATCGCCTAATAAAGCCAGGATAAAGGATGATGATGATGCAATCAAGACAAATCTGGTACTACAGt > 2:616589/1‑143 (MQ=255) tggtgAAGTTAAATTCAAAGGCAATGCCTCAGTTCTCCCGGCGGACAACACGCTGGCAACGGTTACCTTTAAAATCGCCGAATAAAGCCAGGATAAAGGATGATGATGATGCAATCGCGAAAAATCTGGTACTACCGTATAAc < 1:728677/143‑1 (MQ=255) gaaTTCAAAGGTAATGCCTCAGGTCTCCCGGCGGATAACACGCTGGCAACGGTTACCTTTAAAATCGCCGAATAAAGCCAGGATAAAGGACGATGATGATGCAATCGCGAAAAATCTGGTACTACCGTATAACCCTCatcatc < 2:474499/142‑1 (MQ=255) aaaTTCAAAGGCGACGGCTCAGTTCTCCCGGCGGAGAACACGCTGGCAACGGTTATGTTTATAATCGTAGCTTAAAGCCAGGATAAAGGATGATGTTGCTGCACTCGCGAAAAATCTGGTACTACCGTATAACCCTCatcatc < 2:521386/143‑1 (MQ=255) aaTTCAAAGGCAATGCCTCAGTTCGCCCGGCGGATAACACGCTGGCAGCGGTTACCTTTAAAATCGCCGAATAAAGCCAGGATAAAGGATGATGATGATGCAATCGCGAAAAATCTGGTACTACCGTATAACCCTCATCATcc < 2:460894/143‑1 (MQ=255) aTTCAAAGGCAATGCCTCAGTTCTCCCGGCGGATAACACGCTGGCAACGGTTACCTTTAAAATCGCCGAATAAAGCCAGGATAAAGGATGATGATGATGCAATCGCGAAAAATCTAGTACTACCGTATAACCCTCATCAccca > 2:602921/1‑142 (MQ=255) ttCAAAGGCAATGCCTCAGTTCTCCCGGCGGATAACACGCTGGCAACGGTTACCTTTAAAATCACCGAATAAAGCCAGGATAAAGGATGATGATGATGCAATCGCGAAAAATCTGGTACTACCGTATAACCCTCATCATccag > 1:116486/1‑141 (MQ=255) aaaGGCAATGCCTCAGTTCTCCCGGCGGATAACACGCTGGCAACGGTTACCTTTAAAATCGCCGAATAAAGCCAGGATAAAGGATGATGGTGATGCAATCGCGAAAAATCTGGTACTACCGTATAACCCTCATCATCCtgttg > 1:598882/1‑143 (MQ=255) aaTGCCTCAGTTCTCCCGGCGGATAACACGCTGGCAACGGTTACCTTTAAAATCGCCGAATAAAGCCAGGATAAAGGATGATGATGATGCAATCGCGAAACATCTGGTACTACCGTATCACCCTCAACATCCTCTTGCTCGCt > 2:720720/1‑143 (MQ=255) tGCCTCAGTTCTCCCGGCGGATAACACGCTGGCAACGGTTACCTTTAAAATCGCCGAATAAAGCCAGGATAAAGGATGATGATGATGCAATCGCGAAAAATCTGGTACTACCGTATAACACTCATCATCCTGTTGTTCGCtgt > 1:352607/1‑141 (MQ=255) gTTCTCCCGGCGGATAACACGCTGGCAACGGTTACCTTTAAAATCGCCGAATAAAGCCAGGATAAAGGATGATGATGATGCAATCGCGAAAAATCTGGTACTACCGTATAACCCTCATCATCCTGTTGTTCGCTATGctgctg < 1:737495/143‑1 (MQ=255) tctcCCGGCGGATAACACGCTGGCAACGGTTACCTTTAAAATCGCCGAATAAAGCCAGGATAAAGGATGATGATGATGCAATCGCGAAAAATCTGGTACTACCGTATAACCCTCATCATCCTGTTGTTCGCTATGCTGCTGGc < 1:505873/143‑1 (MQ=255) cggATAACACGCTGGCAACGGTTACCTTTAAAATCGCCGAATAAAGCCAGGATAAAGGATGATGATGATGCAATCGCGAAAAATCTGGTACTACCGTATAACCCTCATCATCCTGTTGTTCGCTATGCTGCTGGCATGGgcgc < 1:489392/143‑1 (MQ=255) gATAACACGCTGGCAACGGTTACCTTTAAAATCGCCGAATAAAGCCAGGATAAAGGATGATGATGATGTGGTCGCCAAAAACCTGGCCTCGCCAGCAAAGCTCCAGCACTCTGTTGTTCTCTATGCTGCTGGCAAGGGCgatg > 2:349378/1‑143 (MQ=255) tGGCAACGGTCACCTTTAAAATCGCCGAATAAAGCCAGGATAAAGGATGATGATGATGCAATCGCGAAAAATCTGGTACTACCGTATAACCCTCATCATCCTGTTGTTCGCTATGCTGCTGGCATGGGCGCTGCTTCCCGGCg < 1:456462/143‑1 (MQ=255) aaCGGTTACCTTTAAAATCGCCGAATAAAGCCAGGATAAAGGATGATGATGATGCAATCGCGAAAAATCTGGTACTACCGTATAACCCTCATCATCCTGTTGTTCGCTATGCTGCTGGCATGGGCGCTGCTGCCCGGCGTCCa > 2:294206/1‑143 (MQ=255) aaCGGTTACCTTTAAAATCGCCGAATAAAGCCAGGATAAAGGATGATGATGATGCAATCGCGAAAAAGCTGGTACTACCGTATAACCCTCATCATCCTGTTGTTCGCTATGCTGCTGGCATGGGCGCTGCTTCCCCGCGCCCa > 2:559877/1‑143 (MQ=255) cTTTAAAAGCGCCGAATAAAGCCAGGATAAAGGATGAGGATGATGCAATCGCGAAAAATCTGGTACTACCGTATAACCCTCATCATCCTGTTGTTCGCTATGCTGCTGGCATGGGCGCTGCTTCCCGGCGTCCATGAGTTTAt < 1:538985/143‑1 (MQ=255) tttAAAATCGCCGAATAAAGCCAGGATAAAGGATGATGATGATGCAATCGCGAAAAATCTGGTACTACCGCATAACCCTTATCATCCTgttgtt < 2:691867/94‑1 (MQ=255) tttAAAATCGCCGAATAAAGCCAGGATAAAGGATGATGATGATGCAATCGCGAAAAATCTGGTACTACCGCATAACCCTTATCATCCTgttgtt > 1:691867/1‑94 (MQ=255) tttAAAATCGCCGAATAAAGCCAGGATAAAGGATGATGATGATGCAATCGCGAAAAATCTGGTACTACCGCATAACCCTCATCATCCTgttgtt < 2:691834/94‑1 (MQ=255) tttAAAATCGCCGAATAAAGCCAGGATAAAGGATGATGATGATGCAATCGCGAAAAATCTGGTACTACCGCATAACCCTCATCATCCTgttgtt > 1:691834/1‑94 (MQ=255) gtcGAATAAAGCCAGGATAAGGGATGCTGATGATGCAATCGCGAAAAATCTGGTACTACCGTATAACCCATCTCATCCTGTTGTTCGCTATGCTGCTGGCATGGGCGCTGCTTCCCGGCGTCCATGAGTTTATCAATCGCAGc < 2:593728/141‑1 (MQ=255) aaaGCCAGGATAAAGGATGATGATGATGCAATCGCGAAAAATCTGGTACTACCGTATAACCCTCATCATCCTGTTGTTCGCTATGCTGCTGGCATGGGCGCTGCTTCCCGGCGTCCATGAGTTTATCAATCGCAGCGTTgcgg > 1:710214/1‑143 (MQ=255) aGCCAGGATAAAGGATGATGATGATGCAATCGCGAAAAATCTGGTACTACCGTATAACCCTCATCATCCTGTTGTTCGCTATGCTGCTGGCATGGGCGCTGCTTCCCGGCGTCCATGAGTTTATCAATCGCAGCGTTgcggcg < 1:201830/143‑1 (MQ=255) cAGGATAAAGGATGATGATGATGCAATCGCGAAAAATCTGGTACTACCGTATAACCCTCATCATCCTGTTGTTCGCTATGCTGCTGGCATGGGCGCTGCTTCCCGGCGTCCATGAGTTTATCCATCGCAGCGTTGCGGCGttg > 2:635885/1‑142 (MQ=255) aGGATAAATGATGATGATGATGCAATCGCGAAAAATCTGGTACTACCGTATAACCCTCATCATCCTGTTGTTCGCTATGCTGCTGGCATGGGCGCTGCTTCCCGGCGTCCATGAGTTTATCAATCGCAGCGTTGCGGCGTTTg < 2:322892/143‑1 (MQ=255) ggATGATGATGATGCAATCGCGAAAAATCTGGTACTACCGTATAACCCTCATCATCCTGTTGTTCGCTATGCTGCTGGCATGGGCGCTGCTTCCCGGCGTCCATGAGTTTATCAATCGCAGCGTTGCGGCGTTTGCCGCCGTg < 1:699400/143‑1 (MQ=255) gatgatgatgatGCAATCGCGAAAAATCTGGTACTACCGTATAACCCTCATCATCCTGTTGTTCGCTATGCTGCTGGCATGGGCGCTGCTTCCCGGCGTCCATGAGTTTATCAATCGCAGCGTTGCGGCGTTTGCCGCCGTgg < 1:554360/143‑1 (MQ=255) gatgatgatgatGCAATCGCGAAAAATCTGGTACTACCGTATAACCCTCATCATCCTGTTGTTCGCTATGCTGCTGGCATGGGCGCTGCTTCCCGGCGTCCATGAGTATAACAATCGCAGCGTTGCGGCGTTTGCCGCCGTgg > 1:210900/1‑143 (MQ=255) atgatgatgCAATCGCGAAAAATCTGGTACTACCGTATAACCCTCATCATCCTGTTGTTCGCTATGCTGCTGGCATGGGCGCTGCTTCCCGGCGTCCATGAGTTTCTCAATCGCACCGTTGCGCCGTTTGCCGCCGAGCAccc > 2:529802/1‑142 (MQ=255) tgatgCAATCGCGAAAAATCTGGTACTACCGTATAACCCTCATCATCCTGTTGTTCGCTATGCTGCTGGCATGGGCGCTGCTTCCCGGCGTCCATGAGTTTATCAATCGCAGCGTTGCGGCGTTTGCCGCCGTGGACCAACAg < 1:317885/143‑1 (MQ=255) tgatgCAATCGCGAAAAATCTGGTACTACCGTATAACCCTCATCATCCTGTTGTTCGCTATGCTGCTGGCATGGGCGCTGCTTCCCGGCGTCCATGAGCTTATCAATTGCCGTGGTGGGGCGGTTGTCCCCCGGGCCCAAcgg > 1:348692/1‑141 (MQ=255) cgcgAAAAATCTGGTACTACCGTATAACCCTCATCATCCTGTTGTTCGCTATGCTACTAGCATGGGCGCTGCTTCACGGAGTCCATGAGTTTATCAATCGCAGCGTTGCGGCGTTTCCCGCCGTTGGCCAACAGGGCCTAGag > 1:514696/1‑142 (MQ=255) aaaaaTCTGGTACTACCGTATAACCCTCATCATCCTGTTGTTCGCTATGCTGCTGGCATGGGCGCTGCTTCCCGGCGTCCATGAGTTTATCAATCGCAGCGTTGCGGCGTTTGCCGCCGTGGACCAACAGGGTATAGAACGCt < 1:710022/143‑1 (MQ=255) aaTCTGGTACTACCGTATAACCCTCATCATCCTGTTGTTCGCTATGCTGCTGGCATGGGCGCTGCTTCCCGGCGTCCATGAGTTTATCAATCGCAGCGTTGCGGCGTTTGCCGCCGTGGACCCACAGGGTATAGAACGCTTTa > 1:547815/1‑143 (MQ=255) tCTGGTACTACCGTATAACCCTCATCATCCTGTTGTTCGCTATGCTGCTGGCATGGGCGCTGCTTCCCGGCGTCCATGAGTTTATCAATCGCAGCGTTGCGGCGTTTGCCGCCGTGGACCAACAGGGTATAGAACGCTTTAtt < 1:101106/143‑1 (MQ=255) tCTGGTACTACCGTATAACCCTCATCATCCTGTTGTTCGCTATGCTGCTGGCATGGGCGCTGCTTCCCGGCGTCCATGAGTTTATCAATCGCAGCGTTGCGGCGTTTGCCGCCGTGGACCAACAGGGTATAGAACGCTTTAtt < 1:91162/143‑1 (MQ=255) cTGGTACTACCGTATAACCCTCATCATCCTGTTGTTCGCTATGCTGCTGGCATGGGCGCTGCTTCCCGGCGTCCATGAGTTTATCAATCGCAGCGTTGCGGCGTTTGCCGCCGTGGACCAACAGGGTATAGAACGCTTTATTc > 1:456224/1‑143 (MQ=255) gTACTACCGTATAACCCTCATCATCCTGTTGTTCGCTATGCTGCTGGCATGGGCGCTGCTTCCCGGCGTCCATGAGTGTATCAATCGCAGCGTTGCGGCGTTTGCCGCCGTGGACCAACAGGGTATAGAACGCTTTATTCAGt < 2:438024/143‑1 (MQ=255) gTATAACCCTCATCATCCTGTTGTTCGCTATGCTGCTGGCATGGGCGCTGCTTCCCGGCGTCCATGAGTTTATCAATCGCAGCGTTGCGGCGTTTGCCGCCGTGGACCAACAGGGTATAGAACGCTTTATTCAGTCTTACGgc > 1:419999/1‑143 (MQ=255) gTATAACCCTCATCATCCTGTTGTTCGCTATGCTGCTGGCACGGGCGCTGCTTCCCGGCGTCCATGAGTTTATCAATCGCAGCGTTGCGGCGTTTGCCGCCGTGGACCAACAGGGTATAGAACGCTTTATTCAGTCTTACGgc < 1:65467/143‑1 (MQ=255) | AAACGTGGTGAAGTTAAATTCAAAGGCAATGCCTCAGTTCTCCCGGCGGATAACACGCTGGCAACGGTTACCTTTAAAATCGCCGAATAAAGCCAGGATAAAGGATGATGATGATGCAATCGCGAAAAATCTGGTACTACCGTATAACCCTCATCATCCTGTTGTTCGCTATGCTGCTGGCATGGGCGCTGCTTCCCGGCGTCCATGAGTTTATCAATCGCAGCGTTGCGGCGTTTGCCGCCGTGGACCAACAGGGTATAGAACGCTTTATTCAGTCTTACGGC > NC_000913/1834704‑1834987 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |