| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 2,368,101 | T→C | 100% | A21A (GCT→GCC) | arnA → | fused UDP‑4‑amino‑4‑deoxy‑L‑arabinose formyltransferase/UDP‑glucuronate dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,368,101 | 0 | T | C | 100.0% | 43.4 / NA | 19 | A21A (GCT→GCC) | arnA | fused UDP‑4‑amino‑4‑deoxy‑L‑arabinose formyltransferase/UDP‑glucuronate dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (10/9); total (10/9) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
ATCTACACCGATGTCCGCGCCCGCCCCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCTGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGTTTATGCGCCGGATAACGTTAATCATCCG > NC_000913/2367962‑2368233 | aTCTACACCGATGTCCGCGCCCGCCCCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGgccgcc > 2:110407/1‑143 (MQ=255) tCTACACCGATGTCCGCGCCCGCCACCGCTATTTTGTTCAGCAAGTTATCGGTCCATGCAGCAAGAAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGgccgcca > 2:277106/1‑142 (MQ=255) cactgttGTCCGCGCCCGCCCCCGCTATTTTGTTCATCAAGTTATCGGTCCATCCAGCAAGGAAAATGAATAATGAAGACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTa < 2:679393/137‑1 (MQ=255) cacCGATGTCCGCGCCCGCCCCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTAGGTGATGCAGCCGCGCTGGCCGCCGGTTa > 2:391878/1‑143 (MQ=255) tatgcctgcgcCCGCCGCCGCTACTTCGTTAATCAAGTTTTCCGTCAATCCTGCAACTAAGATGAATAATGAAATCCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGTTATTGAAGCCCTGCTGGCCGCCGGTTACGaa < 2:110295/136‑1 (MQ=255) ccccGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTACCTACCACGATATAGGATGCCTCGATATTGAAGCCCTGCTGGCCGCCGGTGACGAAACTAGCAcctatgtt > 2:20276/1‑137 (MQ=255) cTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGTCCGCCGGCTCCGGCATTAGCCCCCTTTTTActct > 1:500606/1‑140 (MQ=255) cTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATCGAAGCCCCGCTGGCCGCCGGTTCCGAAATCCGCGCCGTCTTTAcccc > 1:654308/1‑142 (MQ=255) ttGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAGCCTGCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTg < 1:253724/143‑1 (MQ=255) tCAGCGAGTTTTCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTCCCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATaa < 2:447338/143‑1 (MQ=255) tCAGCAAGCTCTCGGTCCAGGTGGCAATGTAAATGAATTATGTTAACCGTGTTTTTTGCCTACCACGATATGGTTTGCCTCGGGCTGCAAGCCCTTCTGGCCGCCGGTTACGAAATTAGCGCTATTTTTACCCATACTGATaa < 2:530785/143‑1 (MQ=255) cAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGTACTTAGCGCCATTTTTACCCATACTGATAATccc > 1:719090/1‑143 (MQ=255) gTCGATCCAGCAAGTAAACTGAATTATCACAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCTCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAg < 2:254833/143‑1 (MQ=255) tcactaatGAAAACCGCGGCTTTGGCCTCCCACGATCTGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGc < 1:587932/139‑1 (MQ=255) gtagaCCGTCGGTTTTGCCTACCGCGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCTGGTTATGAAATTTTTTCTTTTTTTTCCCATACTGATAATCGCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTgg < 1:237946/139‑1 (MQ=255) tcgtTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCATTTATGGTTCGGTGGCTCGTCTGGCGGCGGaa > 2:724860/1‑143 (MQ=255) tACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAGGCGGCCTTcc > 1:275826/1‑143 (MQ=255) ccACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGACATTCATACCGATATGGATAATCCCGGTGAATCTGCCTTCTATGGTTCGGTGCCTCGTCTGGCCGTCGTAAGAGGCATTcaag > 1:704812/1‑140 (MQ=255) gaCGATATGGGATGCCTCGGTATGGAAGCCCGGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACACATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGt < 2:717169/142‑1 (MQ=255) cTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCAATACTGATAATCCCGGTGACAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGCAAGAGGCATTCCGGTTTATGCGCCGGATaa > 2:108994/1‑143 (MQ=255) cccTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCCTTCCGGTTTATGAGCCGGATAACGTTAATCGTCCg > 1:596788/1‑143 (MQ=255) | ATCTACACCGATGTCCGCGCCCGCCCCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCTGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGTTTATGCGCCGGATAACGTTAATCATCCG > NC_000913/2367962‑2368233 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |