Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 3,332,822 | G→A | 8.2% | intergenic (‑87/+40) | yhbE ← / ← rpmA | inner membrane protein YhbE/50S ribosomal subunit protein L27 |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 3,332,822 | 0 | G | A | 8.2% | 125.1 / 3.5 | 49 | intergenic (‑87/+40) | yhbE/rpmA | inner membrane protein YhbE/50S ribosomal subunit protein L27 |
Reads supporting (aligned to +/- strand): ref base G (20/25); new base A (2/2); total (22/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.73e-01 |
ATTGCTGTGGTGAGCGCCAAAAGAATGCCAATGCCTGCCTGCTGCTTCATACCGTATTCCCTGCAAAGCGCATTTGCGGATTAACGTCGCACCATGCGCATTTTTACCGGTTATCGAATGTAAAAAGCCCCGCAACGTGTTGCGGGGCTTTCATCCGTTACCGGGACGCGAAAAACTTATTCAGCTTCGATGCTGATAAATTTACGGTTTTTCGGGCCTTTAACTTCGAATTTCACTTTACCGTCTGCTTTAGCAAACAGAGTGTGGTCACGACC > NC_000913/3332686‑3332960 | aTTGCTGTGGTGAGCGCCAAAAGAATGCCAATGCCTGCCTGCTGCTTCATACCGTATTCCCTGCAAAGCGCATTTGCGGATTAACGTCGCACCATGCGCATTTTTACCGGTTATCGAATGTAAAAAGCCCCGCAACGTGTTGc < 1:234131/143‑1 (MQ=255) gCTGTGGTGAGGGCCAAAAGAATGCCAATGCCTGCCTGCTGCTTCATACCGTATTCCCTGCAAAGCGCATTTGCGGATTAACGTCGCACCATGCGCATTTTTACCGGTTATCGAATGTAAAAAGCCCCGCAACGTGTTGCggg < 1:542275/143‑1 (MQ=255) gCTGTGGTGAGCGCCAAAAGAATGCCAATGCCTGCCTGCTGCTTCATACCGTATTCCCTGCAAAGCGCATTTGCGGATTAACGTCGCACCATGCGCATTTTTACCGGTTATCGAATGTAAAAAGCCCCGCAACGTGTTGCggg < 2:614483/143‑1 (MQ=255) gCTGTGGTGAGCGCCAAAAGAATGCCAATGCCTGCCTGCTGCTTCATACCGTATTCCCTGCAAAGCGCATTTGCGGATTAACGTCGCACCATGCGCATTTTTACCGGTTATCGAATGTAAAAAGCCCCGCAACACGTTGCggg < 1:384511/143‑1 (MQ=255) gCTGGGGTGAGTGCCTAAAGTGTGCCGATGCCTGCCTGCTGCGTCATACCGTATTCCTTGCAAAGCGCACTTGCGGCTTAGCGTCGCACCATGCGCATTTTTACCGGTTATCGAATGTAAAAAGCCCCGCAACGTGTTGCggg < 2:518092/143‑1 (MQ=255) cTGTGGTGAGCGCCAAAAGAATGCCAATGCCTGCCTGCTGCTTCATACCGTATTCCCTGCAAAGCGCATTTGCGGATTAACGTCGCACCATGCGCATTTTTACCGGTTATCGAATGTAAAAAGCCCCGCAACACGTTGCgggg < 1:423387/143‑1 (MQ=255) tgAGCGCCAAAAGAATGCCAATGCCTGCCTGCTGCTTCATACCGTATTCCCTGCAAAGCGCATTTGCGGATTAACGTCGCACCATGCGCATTTTTACCGGTTATCGAATGTAAAAAGCCCCGCAACGTGTTGCGGGGCTTTCa > 1:468655/1‑143 (MQ=255) gAGCGCCCAAAGAATGCCAATGCCTGCCTGCTGCTTCATACCGTATTCCCTGCAACGCGCATTTGCGGATTAACGTCGCACCATGCGCATTTTTACCGGTTATCGAATGTAAAAAGCCCCGCAACGTGTTGCGGGGCTTTCAt < 2:693166/143‑1 (MQ=255) gcgcCAAAAGAATGCCAATGCCTGCCTGCTGCTTCATACCGTATTCCCTGCAAAGCGCATTTGCGGATTAACGTCGCACCATGCGCATTTTTACCGGTTATCGAATGTAAAAAGCTCCTCAACGTGTTGCGGGGCTTTCATcc < 2:202076/143‑1 (MQ=255) aaaaGACTGCCAATGCCTGCCTGCTGCTTCATACCGTATTCCCTGCAAAGCGCATTTGCGGATTAACGTCGCACCATGCGCATTTTTACCGGTTATCGAATGTAAAAAGCCCCGCAACGTGTTGCGGGGCTTTCATCCGTTAc < 1:282326/143‑1 (MQ=255) aatgccaaggccTGGCTGGTGCTTGACACCGTATTCCCTGCAAAGCGCATTTGCGAATTAACGTCTCACCGCACGCACTTGTACCGGTTATCGAATGTAAAAAGCCCCGCAACGTGTTGCGGGGCTTTCATCCGTTACCGGGa < 2:315946/143‑1 (MQ=255) tgccaatgccTGCCTGCTGCTTCATACCGTATTCCCTGCAAAGCGCCTTTGCGGATTAACGTCGCACCATGCGCATTTTTACCGGTTATCGAATGTAAAAAGCCCCGCACCGTGTTGCGGGGCTTCCATCCGTTAcagcgccc > 2:82963/1‑136 (MQ=255) gccaatgccTGCCTGCTGCTTCATACCGTATTCCCTGCAAAGCGCATTTGCGGATTAACGTCGCACCATGCGCATTTTTACCGGTTATCGAATGTAAAAAGCCCCGCAACGTGTTGCGGGGCTTTCATCCGTTACCGGGAcgc < 2:756265/143‑1 (MQ=255) caatgccTGCCTGCTGCTTCATACCGTATTCCCTGCAAAGCGCATTTGCGGATTAACGTCGCACCATGCGCATTTTTACCGGTTATCGAATGTAAAAAGCCCCGCAACGTGTTGCGGGGCTTTCATCCTTTACCGAGACGCGa > 1:24264/1‑143 (MQ=255) gcgtgcctgcTGCTTCATACCGTGTTCCCTGCAAAGCGCATGTGCGGATTAACGTCGCACCATGCGCATTTTTACCGGTTATCGAATGTAAAAAGCCCCGCAACGTGTTGCGGGGCTTTCATCCGTTACCGGGACGCGaaaaa < 2:440552/140‑1 (MQ=255) cctgcctcCTGCTTCATACCGTATTCCCTGCAAAGCGCATTTGCGGATTAACGTCGCACCATGCGCATTTTTACCGGTTATCGAATGTAAAAAGCCCCGCAACGTGTTGCGGGGCTTTCATCCGTTACCGGGACGCGAAAAAc < 1:585020/143‑1 (MQ=255) ctgcctgcTGCTTCATACCGTATTCCCTGCAAAGCGCATTTGCGGATTAACGTCGCACCATGCGCATTTTTACCGGTTATCGAATGTAAAAAGCCCCGCAACGTGTTGCGGGGCTTTCATCCGTTACCGGGACGCGAAAAACt > 1:324851/1‑143 (MQ=255) ctgctgCTTCATACCGTATTCCCTGCAAAGCGCATTTGCGGATTAACGTCGCACCATGCGCATTTTTACCGGTTATCGAATGTAAAAAGCCCCGCAACGTGTTGCGGGGCGTTCATCCGTTACAGGGCCGCGAGAAACTTAtt > 2:399696/1‑143 (MQ=255) gctgctTCATACCGTATTCCCTGCAAAGCGCATTTGCGGATTAACGTCGCACCATGCGCATTTTTACCGGTTATCGAATGTAAAAAGCCCCGCAACGTGTTGCGGGGCTTTCATCCGTTACCGGGACGCGAAAAACTTATTCa > 1:186680/1‑143 (MQ=255) tgctTCATACCGTATTCCCTGCAAAGCGCATTTGCGGATTAACGTCGCACCATGCGCATTTTTACCGGTTATCGAATGTAAAAAGCCCCGCAACGTGTTGCGGGGCTTTCATCCGTTACCGGGACGCGACAAACTTATTCAGc > 1:54766/1‑143 (MQ=255) gctTCATACCGTATTCCCTGCAAAGCGCATTTGCGGATTAACGTCGCACCATGCGCATTTTTACCGGTTATCGAATGTAAAAAGCCCCGCAACGTGTTGCGGGGCTTTCATCCGTTACCGGGACGCGAAAAACTTATTCAGCt < 2:227259/143‑1 (MQ=255) gctTCATACCGTATTCCCTGCAAAGCGCATTTGCGGATTAACGTCGCACCATGCGCATTTTTACCGGTTATCGAATGTAAAAAGCCCCGCAACGTGTTGCGGGGCTTTCATCCGTTACCGGGACGCGAAAAACTTATTCAGCt > 1:151291/1‑143 (MQ=255) tCATACCGTATTCCCTGCAAAGCGCATTTGCGGATTAACGTCGCACCATGCGCATTTTTACCGGTTATCGAATGTAAAAAGCCCCGCAACGTGTTGCGGGGCTTTCATCCGTTACCGGGACGCGAAAAACTTATTCAGCTTCg < 2:324851/143‑1 (MQ=255) tACCGTATTCCCTGCAAAGCGCATTTGCGGATTAACGTCGCACCATGCGCATTTTTACCGGTTATCGAATGTAAAAAGCCCCGCAACGTGTAGCGGGGCTTTCATCCGTTACCGGGACGCGAAAAACTTATTCAGCTTCGATg < 2:413175/143‑1 (MQ=255) gCAAAGCGCATTTGCGGATTAACGTCGCACCATGCGCATTTTTACCGGTTATCGAATGTAAAAAGCCCCGCAACGTGTTGCGGGGCTTTCATCCGTTACCGGGACGCGAAAAACTTATTCAGCTTCGATGCTGATAAATTTAc < 1:423428/143‑1 (MQ=255) gCAAAGCGCATTTGCGGATTAACGTCGCACCATGCGCATTTTTACCGGTTATCGAATGTAAAAAGCCCCGCAACGTGCTGCGGGGCTTTCATCCGTTACCCGGACGCGAAAAACTTATTCAGCCTCGATGCTGAGAACtttcc > 2:146179/1‑141 (MQ=255) ttGCGGATTAACGTCGCACCATGCGCATTTTTACCGGTTATCGAATGTAAAAAGCCCCGCAACGTGTTGCGGGGCTTTCATCCGTTACCGGGACGCGAAAAACTTATTCAGCTTCGATGCTGATAAATTTACGGTTGTTCgcg > 1:299925/1‑141 (MQ=255) tGCGGATTAACGTCGCACCATGCGCATTTTTACCGGTTATCGAATGTAAAAAGCCCCGCAACGTGTTGCGGGGCTTTCATCCGTTACCGGGACGCGAAAAACTTATTCAGCTTCGATGCTGATAAATTTACGGTTTTTCGGGc > 1:162280/1‑143 (MQ=255) gATTAACGTCGCACCATGCGCATTTTTACCGGTTATCGAATGTAAAAAGCCCCGCAACGTGTTGCGGGGCTTTCATCCGTTACCGGGACGCGAAAAACTTATTCAGCTTCGATGCTGATAAATTTACGGTTTTTCGGGCCttt < 1:419619/143‑1 (MQ=255) aTTAACTTCGCACCATGCGCATTTTTACCGGTTATCGAATGTAAAAAGCCCCGCAACGTGTTGCGGGGCTTTCATCCGTTACCGGGACGCGAAAAACTTATTCAGCTTCGATGCTGATAAATTTACGGTTTTTCGGGCCTTTa < 1:478382/143‑1 (MQ=255) ttAACGTCGCACCATGCGCATTTTTACCGGTTATCGAATGTAAAAAGCCCCGCAACGTGTTGCGGGGCTTTCATCCGTTTCCGTGACGCGAAAATCTTATTCAGCTTCGATGCTGATAAATTTACGGTTTTTCGGGCCTTTaa < 1:82386/143‑1 (MQ=255) aCGTCGCACCATGCGCATTTTTACCGGTTATCGAATGTAAAAAGCCCCGCAACGTGTTGCGGGGCTTTCATCCGTTACCGGGACGCGAAAAACTTATTCAGCTTCGCTGCTGAGCACTTTAAGGTTTTTCGGGCCtcaagctt > 2:649544/1‑136 (MQ=255) tCGCACCATGCGCATTTTTACCGGTTATCGAATGTAAAAAGCCCCGCAACGTGTTGCGGGGCTTTCATCCGTTACCGGGACGCGAAAAACTTATTCAGCTTCGATGCTGATAAATTTACGGTTTTTCGGGCCTTTAACTTCGa > 2:490166/1‑143 (MQ=255) gcggaCCATGCGCATTGTTACCGGTTATCGAATGTAAAAAGCCCCGCAACGTGTTGCGGGGCTTTCATCCGTTACCGGGACGCGAAATACTTATTCAGCTTCGATGCTGATAAATTTACGGTTTTTCGGGCCTTTAACTTCGa < 2:542351/139‑1 (MQ=255) cGCACCATGCGGATTTTTACCGGTTATGGAAGGTAAAAAGCCCCGCAACGTGTTGCGGGGCTTTCATCCGTTACCGGGACGCGAAAAACTTATTCAGCTTCGATGCTGATAAATTTACGGTTTTTCGGGCCTTTAACTTCGaa < 1:171288/143‑1 (MQ=255) cgggggcATTGTTGCCGGGGATCGAATGGGAAGGGCCCCGCAACGTGTTGCGGGGCTTTCATCCGTTACCGGGACGCGAAAAACTTATTCAGCTTCGATGCTGATAAATTTACGGTTTTTCGGGCCTTTAACTTCGAATTTCa < 2:552969/138‑1 (MQ=255) aTGCGCATTTTTACCGGTTATCGAATGTAAAAAGCCCCGCAACGTGTTGCGGGGCTTTCATCCGTTACCGGGACGCGAAAAACTTATTCAGCTTCGATGCTGATAAATTTACGGTTTTTCGGGCCTTTCACTTCGAATTTCAc > 2:180860/1‑143 (MQ=255) cGGTTATCGAATGTAAAAAGCCACGCAACGTGTTGCCGGCCTTGCACCCGTTACCGGGACGCGAAAAACTTATTCAGCTTCGATGCTGATAAATTTACGGTTTTTCGGGCCTTTAACTTCGAATTTCACTTTACCGTCTGCtt < 1:490673/143‑1 (MQ=255) gTTATCGAATGTAAAAAGCCCCGCAACGTGTTGCGGGGCTTTCATCCGTTACCGGGACGCGCAAAACTTATTCAGCTTCGATTCTGATAAATTTACGGCTCTTCGGGCCTTTAACTTCGCAATTCCCCTTACCGTCTGCgttg > 2:682562/1‑142 (MQ=255) gTTATCGAATGTAAAAAGCCCCGCAACGTGTTGCGGGGCTTTCATCCGTTACCGGGACGCGAAAAACTTATTCAGCTTCGATGCTGATAAATTTACGGTTTCGCCGTCCGTTAACTTCGAATTTCACTTTACCGTCTGCTTTa > 2:346488/1‑143 (MQ=255) gcgaatcgaatAAGCCCCGCAACGTGTTTCGGGGGTTTCATCCGTTTCCGGGACGCGAAAAACTTATTCAGCTTCGATGCTGATAATTTTACGGTTTTTCGGGTCTTTAACTTCGGATTGCACTTTACCGTCTGCTTTAGCaa < 2:339956/142‑1 (MQ=255) cGAATGTAAAAAGCCCCGCAACGTGTTGCGGGGCTTTCATCCGTTACCGGGACGCGAAAAACTTATTCAGCTTCGATGCTGATAAATTTACGGTTTTTCGGGCCTTTAACTTCGAATTTCACTTTACCGTCTGCTTTAGCaaa < 1:607129/143‑1 (MQ=255) gAATGTAAAAAGCCCCGCAACGTGTTGCGGGGCTTTCATCCGTTACCGGGACGCGAAAAACTTATTCAGCTTCGATGCTGATCAATTTACGGTTTTTCGGGCCTTTAACTTCGACTTTCACTTTACCGTCTGCTTTAGCAAAc > 1:716061/1‑143 (MQ=255) aaTGTAAAAAGCCCCGCAACGTGTTGCGGGGCTTTCATCCGTTACCGGGACGCGAAAAACTTATTCAGCTTCGATGCTGATAAATTTACGGTTTTTCGGGCCTTTAACTTCGAATTTCACTTTACCGTCTGCTTTAGCAAACa > 1:226662/1‑143 (MQ=255) tGTAAAAAGCCCCGCAACGTGTTGCGGGGCTTTCATCCGTTACCGGGACGCGAAAAACTTATTCAGCTTCGATGCTGATAAATTTACGGTTTTTCGGGCCTTTAACTTCGAATTTCACTTTCCCGTCTGCTTTAGCAAACaga > 2:426154/1‑143 (MQ=255) aGCCCCGCAACACGTTGCGGGGCTTTCATCCGTTACCGGGACGCGAAAAACTTATTCAGCTTCGATGCTGATAAATGTACGGTTTTTCGGGCCTTTAACTTCGAATTTCACTTTACCGCCTGCTTTAGCAAAGAGAGTGTggc > 2:241880/1‑142 (MQ=255) cccGCAACGTGTTGCGGGGCTTTCATCCATTACCGAGACGCGAAAAACTTATTCAACTTCCATGCTGATAAAGTTACGGTTTTTCGGGCCTTTAACTTCGAATTTCGCTTTACCCTCCCCTTTACACCACAGAGTGTGGTCAc > 2:746741/1‑143 (MQ=255) cccGCAACACGTTGCGGGGCTTTTATCCGTTACCGGGACGCGAAACACTTATTCAGCTTCGATGCTGATAAATTTACGGTTTTTCGGGCCTTTAACTTCGAATTTCACTTTACCGTCTGCTTTAGCAAACAGCGCGTGGTCat > 2:240284/1‑142 (MQ=255) gaaCGTGGGGCGGGGCTTTCATCCGTTAGCGGGACGCGAAAAACGTAGTCAGCTTCGATGCTGATAAATTTACGGTTTTTCGGGTCTTTAACTCCGAATTTCACTTTACCGTCTGCTTTAGCAAACAGAGTGTGGTCACGAcc < 1:545714/142‑1 (MQ=255) | ATTGCTGTGGTGAGCGCCAAAAGAATGCCAATGCCTGCCTGCTGCTTCATACCGTATTCCCTGCAAAGCGCATTTGCGGATTAACGTCGCACCATGCGCATTTTTACCGGTTATCGAATGTAAAAAGCCCCGCAACGTGTTGCGGGGCTTTCATCCGTTACCGGGACGCGAAAAACTTATTCAGCTTCGATGCTGATAAATTTACGGTTTTTCGGGCCTTTAACTTCGAATTTCACTTTACCGTCTGCTTTAGCAAACAGAGTGTGGTCACGACC > NC_000913/3332686‑3332960 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |