New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	566777 =	NA (NA)	1854 (45.540)	248/262	NT	97.6%	noncoding (1/1258 nt)	IS3	repeat region
	?	NC_000913	= 572471	46 (1.120)					coding (6/456 nt)	ybcN	DLP12 prophage; DNA base‑flipping protein

CGAAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCT  >  NC_000913/566635‑566912                                                                                                                                               |                                                                                                                                        cGAAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCt                                                                                                                                         <  1:567683/143‑1 (MQ=255)  gAAGATCGCAGACATCACAGCTATTTTCGTACTGATAGGACCAAGGCTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACTCATAAGAGCTTCTGTGCACACGACTTTGCCGCTGTAACATGCGCAACCGTAATCTg                                                                                                                                        <  2:382757/143‑1 (MQ=255)  gAAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTATGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTg                                                                                                                                        >  1:717061/1‑143 (MQ=255)    aGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGTAAGTGTATGACGGGTAAAGAGGCTATTATTCATTACCTGGGGACGCATAAGAGCTGCTGTGCACAGGGCGTTGCCGCGGTAACAGGCGCAACCGTAATCTGAt                                                                                                                                      <  1:141160/143‑1 (MQ=255)     gacggCAGAAATGAAAGCTAAGTTCGCACGTAAAGGGGCAAGTGTATGCCGGGCAAAGAGGCAATTATCCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATc                                                                                                                                     <  2:652537/139‑1 (MQ=255)          cAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTAcc                                                                                                                                >  2:336693/1‑143 (MQ=255)          cAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTAcc                                                                                                                                >  1:672069/1‑143 (MQ=255)            gAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCa                                                                                                                              >  1:752172/1‑143 (MQ=255)              aaTTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGc                                                                                                                            <  1:517246/143‑1 (MQ=255)                tgaaaTCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGTGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCaa                                                                                                                          <  2:524617/141‑1 (MQ=255)                           ttCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACAcg                                                                                                               >  2:135973/1‑143 (MQ=255)                                    aaaGGAGCAAGTGTAAGACGGGCAAAGAGGCAAGTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGGAATAGGGGACAGCCGGCTAAgg                                                                                                      >  2:679938/1‑142 (MQ=255)                                      aGGAACAAGGCTAAGACGGGCAAAGAGGCAATTATGCATTTCCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGAGCTTACCCAGCAATAGTGGACACGCGGCTAAGTGa                                                                                                    <  2:713289/143‑1 (MQ=38)                                            aaGTGTATGCCGGGCCAAGAGGCAATTATTCCTTACCCGGGGATGCATAAGAGCCCCTGTGCACAGGACGTTTCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAAc                                                                                              <  1:718721/143‑1 (MQ=37)                                            aaGTGGATGACGGGCAAATAGTCCATGATTCATTACCGGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAAc                                                                                              <  2:464349/143‑1 (MQ=37)                                               ggtATGACGGGCAAAGGGGCAATTATGCAGTACCTGGGGACGCATAAGAGGTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct                                                                                           <  2:806027/142‑1 (MQ=255)                                                   tGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtcagt                                                                                       <  1:558463/143‑1 (MQ=255)                                                            aaGGGGCAATTGTTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCGTACCCCGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGa                                                                              <  2:24559/143‑1 (MQ=255)                                                                   aaTTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAt                                                                       <  1:487907/143‑1 (MQ=255)                                                                   aaTTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAATCAGAGGTGACTCAAAt                                                                       >  1:447957/1‑143 (MQ=255)                                                                          cATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACCTGACaaaa                                                                >  1:79045/1‑143 (MQ=255)                                                                              aCCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAg                                                            >  1:78725/1‑143 (MQ=255)                                                                                cTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTa                                                          >  1:451096/1‑143 (MQ=255)                                                                                 tGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTAt                                                         >  1:493012/1‑143 (MQ=255)                                                                                 tGGGGACGCAGAAGGGCTTCTGTGCACAGGACGTGGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAAGAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTAt                                                         <  2:108773/143‑1 (MQ=255)                                                                                      acacATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAAGCTCAACCGCAATCAGATCTTACCCAGCAATAGTGGACACACGTCTAAATGAGTAAACTCTCATTAAGAGGTGCCCCACACGGCACAAACACTAGCAccc                                                    >  2:452921/4‑143 (MQ=18)                                                                                        gCATAAGAGCTTCTGTGCACAGTCCGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTTAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAg                                                  <  2:23142/143‑1 (MQ=255)                                                                                        gCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACCAAAACAGTATCCTCCAg                                                  >  1:487597/1‑143 (MQ=255)                                                                                        gCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAg                                                  >  1:337671/1‑143 (MQ=255)                                                                                                          ccaGGACGTTCCCGCGGGAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACa                                <  2:631137/142‑1 (MQ=255)                                                                                                          acaGGACGTTGCCGCGGTAAAAGGCAAAACCGTAATCTGATCTTACCCAGCAATAGAGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAATACAGTATCAACTAGTAAAAAACCCCGTAAACa                                <  2:420852/143‑1 (MQ=17)                                                                                                              gACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCAt                            >  1:771939/1‑143 (MQ=255)                                                                                                                 gTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCg                         >  1:603778/1‑143 (MQ=255)                                                                                                                   tGCCGCGGTCACCGCCTCAACCGTAATCGGATCTAACCCAGCAATAGCAGACACCCGGCTAAGTAAGTAAACTCTCAGTCAGATGTAACTCACATGACAAAAACACTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGcc                       <  2:344415/143‑1 (MQ=11)                                                                                                                      cgcgGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGa                    <  1:203931/143‑1 (MQ=255)                                                                                                                      cgcgGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGa                    >  1:160452/1‑143 (MQ=255)                                                                                                                                      aCCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGAATCCGACGGAATTTCGACGTGAAGcc    >  2:762940/1‑143 (MQ=11)                                                                                                                                        cGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCCCAGCAAGAGGTGACTCACATCACAAAAACAGTATCAACCAGTAAAAAACCCCGCAAACAGCATTCGCCTGCATTTCGCCGTAACGCCCt  >  2:300253/1‑143 (MQ=11)                                                                                                                                        cGTAATCTCAGCTTACCCAGCCAGAGTGGACACGCGGCTAACTGAGTAAACACTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACTGCATTCGCCTGAATTTCGCAGTGAAGCCCt  <  1:673260/143‑1 (MQ=11)                                                                                                                                               |                                                                                                                                        CGAAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCT  >  NC_000913/566635‑566912

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.