| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2422747 = | 45 (1.100) | 3 (0.080) | 3/250 | NT | 6.8% | coding (793/891 nt) | rpnB | recombination‑promoting nuclease RpnB |
| ? | NC_000913 | 2422773 = | 39 (1.000) | coding (767/891 nt) | rpnB | recombination‑promoting nuclease RpnB | |||||
TTACAGCAAACATCCGCCAGTTAACTCCCGGTGTTACAGGATTAGTGGCTTTGCGCGATAAGATCGTCTGGTGAAAGTCGGGTCACCATCATAACTAACTCTCTGTCTAAACCTCTATCCAGCATCTCCTGAGCAATACGCAGGGCTTCTTCGTGTTTGCCCTGCATTGCGCCTTCTTCACGTAATCTGTCAGCAATGGTCATCAGTTTCTCCTTTTCTTGTGGTGCGCGTTCCGCTATCTCACCAATAAATGCACGAAAACGCTGGGCATCCCCTGTT > NC_000913/2422608‑2422886 | ttACAGCAAACATCCGCCAGTTAACTCCCGGTGTTACAGGATTAGTGGCTTTGCGCGATAAGATCGTCTGGTGAAAGTCGGGTCACCATCATAACTAACTCTCTGTCTAAACCTCTATCCAGCATCTCCTGAGCAATACGCAg > 1:789071/1‑143 (MQ=255) cAAACATCCGCCAGTTAACTCCCGGTGTTACAGGATTAGTGGCTTTGCGCGATAAGATCGTCTGGTGAAAGTCGGGTCACCATCATAACTAACGCTCTGTCTAAACCTCTATCCAGCATCTCCTGAGCAATACGCAGGGcttc < 2:663275/143‑1 (MQ=255) cAAACATCCGCCAGTTAACTCCCGGTGTTACAGGATTAGTGACTTTGCGCGATAAGATCGTCTGGTGAAAGTCGGGTCACCATCATAACTAACTCTCTGTCTAAACATCTATCCCGCATCTCACGAGCAACACGCAGGActtc > 2:377525/1‑143 (MQ=255) ccATCCGCCAGTTAACTCCCGGTGTTACAGGATTAGTGGCTTTGCGCGATAAGATCGTCTGGTGAAAGTCGGGTCACCATCATAACTAACTCTCTGTCTAAACCTCTATCCAGCATCTCCTGAGCAATACGCAGGGCttcttc < 1:459373/142‑1 (MQ=255) aTCCGCCAGTTAACTCCCGGTGTTACAGGATTAGTGGCTTTGCGCGATAAGCTCGTCTGGTGAAAGTCGGGTCACCATCATAACTAACTCTCTGTCTAAACCTCTATCCAGCATCTCCTGAGCAATACGCAGGGCTTCTCCgc > 2:656882/1‑142 (MQ=255) ccGCCAGTTAACTCCCGGTGTTACAGGATTAGTGGCTTTGCGCGATAAGATCGTCTGGTGAAAGTCGGGTCACCATCATAACTAACTCTCTGTCTAAACCTCTATCCAGCATCTCCTGAGCAATACGCAGGGCTTCTTCgtgc > 2:449477/1‑142 (MQ=255) cAGTTAACTCCCGGTGTTACAGGATTAGTGGCTTTGCGCGATAAGATCGTCTGGTGAAAGTCGGGTCACCATCATAACTAACTCTCTGTCTAAACCTCTATCCAGCATCTCCTGAGCAATACGCAGGGCTTCTTCGTGTTTGc < 1:754030/143‑1 (MQ=255) caagcaggggatgcccagcgtttgcgtgcatgtattggtgggagagcggaacgcgcaccacaagaaaaggagatactgatgacccttgctgacagattacgtgaagaaggcgcaatGCAGGGCTTCTTCGTGTTTGCCCTGCa > 2:480439‑M1/117‑143 (MQ=255) tCCCGGTGTTACAGGATTAGTGGCTTTGCGCGATAAGATCGTCTGGTGAAAGTCGGGTCACCATCATAACTAACTCTCTGTCTAAACCTCTATCCAGCATCTCCTGAGCAATACGCAGGGCTTCTTCGTGTTTGCCCTGCAtt > 1:457146/1‑143 (MQ=255) cccGGTGTTACAGGATTAGTGGCTTTGCGCGATAAGCTCGTCTGGTGAAAGTCGGGTCACCCTCATAACTAACTCTCTGTCTAAACCTCTATCCAGCATCTCCTGAGCAATACGCAGGGCTCCTTCGTGTTTGCCCTGCATTg > 2:269930/1‑143 (MQ=255) ccGGTGTTACAGGATTAGTGGCTTTGCGCGATAAGATCGTCTGGTGAAAGTCGGGTCACCATCATAACTAACTCTCTGTCTAAACCTCTATCCAGCATCTCCTGAGCAATACGCAGGGCTTCTTCGTGTTTGCCCCGCATTgc > 2:429192/1‑143 (MQ=255) aCAGGCTTAGTGGCTTTGCGCGATAAGATCGTCTGGTGAAAGTCGCGTCACCATCATAACTAACTCTCTGTCTAAACCTCTATCCAGCATCTCCTGAGCAATACGCACGGCTCCTCCGTGTCTGCCCTGCCCTGCGCctcctt > 2:343940/1‑143 (MQ=255) aCAGGATTAGTGGCTTTGCGCGATAAGATCGTCTGGTGAAAGTCGGGTCACCATCATAACTAACTCTCTGTCTAAACCTCTATCCAGCATCTCCTGAGCAATACGCAGGGCTTCTTCGTGTTTGCCCTGCATTGCGCcttctt < 1:719703/143‑1 (MQ=255) cccagcggtttcgtgcatttattggtgagatagcggaacgcgcaccacaagaaaaggagaaactgatgatcattgctgacagattacgtgaagaaggcgcaatGCAGGGCTTCTTCGTGTTTGCCCTGCATTGCGCCttcttc > 2:448122‑M1/104‑143 (MQ=255) ccagcgttttcgtgcatttattggtgagatagcggaacgcgcaccacaagaaaaggagaaactgatgaccattgctgacagattacgtgaagaaggcgcaatGCAGGGCTTCTTCGTGTTTGCCCTGCATTGCGCCTTCTTCa > 2:748905‑M1/103‑143 (MQ=255) tcgTGGCGTTGCGCGATAAGATCGTCTGGTGAAAGTCGGGTCACCATCATAACTATCTCTCTGTCTAAACCTCTATCCAGCATCTCCTGAGCAATACGCAGGGCTTCTTCGTGTTTGCCCTGCATTGCGCCTTCTTCACGTaa < 2:645070/141‑1 (MQ=255) tgTGGCTGTGCGCGATAAGATCGTCTGGTGAAAGTCGGGTCACCATCATAACTAACTCTCTGTCTAAACCTCTATCCAGCATCTCCTGAGCAATACGCAGGGCTTCTTCGTGTTTGCCCTGCATTGCGCCTTCTTCACGTAAt < 2:232727/142‑1 (MQ=255) aGTGGCTTTGCGCGATAAGATCGTCTGGTGAAAGTCGGGTCACCATCATAACTAACTCTCTGTCTAAACCTCTATCCAGCATCTCCTGAGCAATACGCAGGGCTTCTTCGTGTTTGCCCTGCATTGCGCCTTCTTCACGTAAt < 2:507512/143‑1 (MQ=255) tGGCTTTGCGCGATAAGATCGTCTGGTGAAAGTCGGGTCACCATCATAACTAACTCTCTGTCTACACCTCTATCCAGCATCTCCTGAGCAATACGCAGGGCTTCTTCGTGTTTGCCCTGCATTGCGCCTTCTTCACGTAATCt < 2:648932/143‑1 (MQ=255) gCTTTGCGCGATAAGATCGTCTGGTGAAAGTCGGGTCACCATCATAACTAACTCTCTGTCTAAACCTCTCTCCAGCATCTCCTCAGCAATACGCAGGGCTTCTTCGTGTTTGCCCTGCATTGCGCCTTCTTCACGTAATCTGt < 2:469567/143‑1 (MQ=255) cTTTGCGCGATAAGATCGTCTGGTGAAAGTCGGGTCACCATCATAACTAACTCTCTGTCTAAACCTCTATCCAGCATCTCCTGAGCAATACGCAGGGCTTCTTCGTGTTTGCCCTGCATTGCGCCTTCTTCACGTAAtctctc > 1:42055/1‑143 (MQ=255) cTTTGCGCGATAAGATCGTCTGGTGAAAGTCGGGTCACCATCATAACTAACTCTCTGTCTAAACCTCTATCCAGCATCTCCTGAGCAATACGCAGGGCTTCTTCGTATTTGCCCTGCATTGCGCCTTCTTCACGTAATCTGTc > 2:264211/1‑143 (MQ=255) tttGCGCGATAAGATCGTCTGGTGAAAGTCGGGTCACCATCATAACTAACTCTCTGTCTAAACCTCTATCCAGCATCTCCTGAGCAATACGCAGGGCTTCTTCGTGTTTGCCCTGCATTGCGCCTTCTTCACGTAATCTGTCa > 2:108588/1‑143 (MQ=255) gttGCGCGATAAGATCGTCTGCTGAAAGTCGGGTCACCATCATAACTAACTCTCTGTCTCAACCTCTATCCAGCATCTCCTGAGCAATACGCAGGGCTTCTTCGTGTTTGCCCTGCATTGCGCCTTCTTCACGTAATCTGTCa < 2:397375/142‑1 (MQ=255) ttGCGCGATAATATCGTCTGGTGAAAGTCGGGTCACCATCATAACTATCTCTCTGTCTAAACCTCTATCCAGCATCTCCTGAGCAATACGCAGGGCTTCTTCGTGTTTGCCCTGTATTGCGCCTTCTTCACGTAATCTGTCAg < 2:232099/143‑1 (MQ=255) gcgcGATAAGATCGTCTGGTGAAAGTCGGGTCACCATCATAACTAACTCTCTGTCTAAACCTCTATCCAGCATCTCCTGCGCAATACGCAGGGCTTCTTCGTGTTTGCCCTGCATTGCGCCTTCTTCCCGTAACCTGTCAGCa > 1:98277/1‑143 (MQ=255) gATCGTCTGGTGAAAGTCGGGTCACCATCATAACTAACTCTCTGTCTAAACCTCTATCCAGCATCTCCTGAGCAATACGCAGGGCTTCTTCGTGTTTGCCCTGCATTGCGCCTTCTTCACGTAATCTGTCAGCAATGGtcatc > 2:226702/1‑143 (MQ=255) aTCGTCTGGTGAAAGTCGGGTCACCATCATAACTAACTCTCTGTCTAAACCTCTATCCAGCATCTCCTGAGCAATACGCAGGGCTTCTTCGTGTTTGCCCTGCATTGCGCCTTCTTCACGTAATCTGTCAGCAATGGtcatca < 1:500812/143‑1 (MQ=255) aTCGCCTGGTGAAAGTCGGGTCACCATCATAACTAACTCTCTGTCTAAACCTCTATCCAGCATCTCCTGAGCAATACGCAGGGCTTCTTCGTGTTTGCCCTGCATTGCGCCTTCTTCACGTAATCTGTCAGCAATGGtcatca < 1:68467/143‑1 (MQ=255) gTCTGGTGAAAGTCGGGTCACCATCATAACTAACTCTCTGTCTAAACCTCTATCCAGCATCTCCTGAGCAATACGCAGGGCTTCTTCGTGTTTGCCCTGCATTGCGCCTTCTTCACGTAATCTGTCAGCAATGGTCATCAGtt < 2:498581/143‑1 (MQ=255) aaaGTCGGGTCACCATCATAACTAACTCTCTGTCTAAACCTCTATCCAGCATCTCCTGAGCAATACGCAGGGCTTCTTCGTGTTTGCCCTGCATTGCGCCTTCTTCACGTAATCTGTCAGCAATGGTCATCAGTTTCTCCttt < 2:199763/143‑1 (MQ=255) tCGGGTCACCATCACAACTAACTCTCTGTCTAAACCTCTATCCAGCATCTCCTGAGCAATACGCAGGGCTTCTTCGTGTTTGCCCTGCATTGCGCCTTCTTCACGTAATCTGTCAGCAATGGTCATCAGTTTCTCCTTTTCtt < 2:515534/143‑1 (MQ=255) tgTCACCGTCATTACTTTCTCTCTGTCTAAGCCTCTATCCAGCATCTCCTGAGTAATACGCATGGCTTCTTCGTGTTTGTCCTGCATTGCGCCTTCTTCACGTATTCTGTCAGCAATGGTTATCAGTTTCTCTTTTTCTtgtg < 2:301349/142‑1 (MQ=255) ggTCACCATCATAACTCACTCTCTGTCTAAACCTCTATCCAGCATCTCCTGAGCAATACGCAGGGCTTCTTCGTGTTTGCCCTGCATTGCGCCTTCTTCACGTAATCTGTCAGCAATGGTCATCAGTTTCTCCTTTTCTtgtg < 2:789071/143‑1 (MQ=255) gTCACCATCATAACTAACTCTCTGTCTAAACCTCTAT‑CAGCATCTCCTGAGCAATACGCAAGGCTTCTTCGTGTTTGCCCTGCATTGCGCCTTCTTCACGTAATCTGTCAGCAATGGTCATCAGTTTCTCCTTGTCTTgtggt > 1:105890/1‑143 (MQ=255) atAACTAACTCTCTGTCTAAACCTCTATCCAGCATCTCCTGAGCAATACGCAGGGCTTCTTCGTGTTTGCCCTGCATTGCGCCTTCTTCACGTAATCTGTCAGCAATGGTCATCAGTTTCTCCTTTTCTTGTGGTGCGCGTTc < 2:642051/143‑1 (MQ=255) taactaacTCTCTGTCTAAACCTCTATCCAGCATCTCCTGAGCAATACGCAGGGCTTCTTCGTGCTTGCCCTGCATTGCGCCTTCTTCACGTAATCTGTCAGCAATGGTCATCAGTTTCTCCTTTTCTTGTGGTGCGCGTTcc < 2:651029/143‑1 (MQ=255) actaactCTCTGTCTAAACCTCTATCCAGCATCTCCTGAGCAATACGCAGGGCTTCTTCGTGTTTGCCCTGCATTGCGCCTTCTTCACGTAATCTGTCAGCAATGGTCATCAGTTTCTCCTTTTCTTGTGGTGCGCGTTCCGc > 1:674653/1‑143 (MQ=255) actaactCTCTGTCTAAACCTCTATCCAGCATCTCCTGAGCAATACGCAGGGCTTCTTCGTGTTTGCCCTGCATTGCGCCTTCTTCACGTAATCTGTCAGCAATGGTCATCAGTTTCTCCTTTTCTTGTGGTGCGCGTTCCGc > 2:266105/1‑143 (MQ=255) ctctGTCTAAACCTCTATCCAGCATCTCCTGAGCAATATGAGTGACTTCTTCGTGTTTGCCCTGCATTCCGCCTTCTTCACGTCATCTGTCAGCAATGGTCCTCAGTTTCTCCTCTTCTTGTGGTGCGCGTTCCGCTATCTCa > 2:360639/1‑143 (MQ=255) aaaCCTCTATCCGGCATCTCCTGAGCAATACGCAGGGCTTCTTCGTGTTTGCCCTGCATTGCGCCTTCTTCACGTAAGCTGTCAGCAATGGTCATCAGTTTCTCCTTTTCTTGTGGTGCGCGTTCCGCTATCTCACCAATaaa < 1:327866/143‑1 (MQ=255) ccccttgtCCAGCTTCGCCTCAGCAATACGCAGGCCTTCTTCGTGTTTGCCCTGCATTGCGCCTTCTTCACGTAATCTGTCAGCAATGGTCATCAGTTTCTCCTTTTCTTGTGGTGCGCGTTCCGCTATCTCACCAATAAATg < 2:621588/136‑1 (MQ=255) tctATCCAGCATCTCCTGAGCAATACGCAGGGCTTCTTCGTGTTTGCCCTGCATTGCGCCTTCTTCACGTAATCTGTCAGCAATGGTCATCAGATTCTCCTTTTCTTGTGGTGCGCGTTCCGCTCTCTCACCAATAAATGCag > 1:136465/1‑142 (MQ=255) ctATCCAGCATCTCCTGAGCAATACGCAGGGCTTCTTCGTGTTTGCCCTGCATTGCGCCTTCTTCACGTAATCTGTCAGCAATGGTCATCAGTTTCTCCTTTTCTTGTGGTGCGCCTTCCGCCTTCTCACCCATAAACGCACg > 1:88527/1‑143 (MQ=255) tgtcCGGAGCGATACGCAGGGCTGCGTCGGGTTTGCCCTGCATTGCGCCTTCTTCACGTAATCTGTCAGCAATGGTCATCAGTTTCTCCTTTTCTTGTGGTGCGCGTGCCGCTATCTCACCAATAAATGCACGAAAACGCTgg < 2:197768/141‑1 (MQ=255) tctcCTGAGCAATACGCAGGGCTTCTTCGTGTTTGCCCTGCATTGCGCCTTCTTCACGTAATCTGTCAGCAATGGTCATCAGTTTCTCCTTTTCTTGTGGTGCGCGTTCCGCTATCTCACCAATAAATGCACGAAAACGCTgg < 2:86665/143‑1 (MQ=255) cTGAGCAAGACGCAGGGCTTCTTCGTGTTTGCCCTGCATTGCGCCTTCTTCACGTGATCTGTCAGCAATGGTCATCAGTTTCTCCTTTTCTTGTGGTGCGCGTTCCGCTATCTCACCAATAAATGCACGAAAACGCTGGGCAt < 2:787446/143‑1 (MQ=255) gAGCAAGACGCAGGGCTTCTTCGTGTTTGCCCTGCATTGCGCCTTCTTCACGTAATCTGTCAGCAATGGTCATCAGTTTCTCCTTTTCTTGTGGTGCGCGTTCCGCTATCTCACCAATAAATGCACGAAAACGCTGGGCATcc < 1:768917/143‑1 (MQ=255) aGCAATACGCAGCGCCTCTTCGTGTTTGCCGTGCATTGCGCCGTCTTCACGTAATCTGGCAGCAATGGTCATCAGTTTCTCCTTTTCTTGTGGTACGCGTTCCGCTATCTCACCAATAAATACACGCAAACGCTGCGCCTccc > 2:137180/1‑143 (MQ=255) tACGCAGGGCTTCTGCGTGCTCGCCCTGCATTGCGCCTTCTGCACGTAATCTGTCAGCAATGGTCATCAGTTTCTCCTTTTCTTGTGGTGCGCGTTCCGCTATCTCACCAATAAATGCACGAAAACGCTGGGCATCCCCTGtt < 2:314225/143‑1 (MQ=255) | TTACAGCAAACATCCGCCAGTTAACTCCCGGTGTTACAGGATTAGTGGCTTTGCGCGATAAGATCGTCTGGTGAAAGTCGGGTCACCATCATAACTAACTCTCTGTCTAAACCTCTATCCAGCATCTCCTGAGCAATACGCAGGGCTTCTTCGTGTTTGCCCTGCATTGCGCCTTCTTCACGTAATCTGTCAGCAATGGTCATCAGTTTCTCCTTTTCTTGTGGTGCGCGTTCCGCTATCTCACCAATAAATGCACGAAAACGCTGGGCATCCCCTGTT > NC_000913/2422608‑2422886 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |