New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4383657	51 (1.240)	3 (0.080)	3/246	NT	5.7%	intergenic (+37/‑182)	epmA/yjeM	EF‑P‑lysine lysyltransferase/putative transporter YjeM
	?	NC_000913	= 4383664	51 (1.330)					intergenic (+44/‑175)	epmA/yjeM	EF‑P‑lysine lysyltransferase/putative transporter YjeM

GCGTGGCATTAGGTGTTGATCGTCTGGTGATGTTGGCGCTGGGCGCGGAGACACTGGCTGAAGTCATCGCCTTTAGCGTTGACCGGGCATAATTCTGAAAAATTACTGAATTAACAGCGAAGAATGGCGTGATAAGCGCCATTCTGTAGCATATGTTTTCATTTTTCCGTTAAAGGCCACAATTTAAGACTGGATATTTGATATCATCCAGGTATCAATTCTGTATTGGTTTTTACGCTGCCTGCTCAATGTTGCGCAGTGCAGTT  >  NC_000913/4383529‑4383794                                                                                                                                 |                                                                                                                                          gCGGGGCATGAGGTGTTGATCGGCTGGTGATGTTGGCGCTGGGCGCGGAGACACTGGCTGAAGTCATCGCCTTTAGCGTTGACCGGGCATAATTCTGAAAAATTACTGAATTAACAGCGAAGAATGGCGcttatcacgccatt                                                                                                                             <  1:349302‑M1/143‑15 (MQ=255)      tcATTAGGTGTTGCTCGTCTGGTCATTTTGGCGCTGGGCGCGGAGACACTGGCTGAAGTCATCGCCTTTAGAGTTGTCCGGGCATAATTCTGAAAAATTACTGAATTAACAGCGAAGAATGGCGTGATAAGCGCCATTCTGTa                                                                                                                        <  1:805543/142‑1 (MQ=255)        aTTAGGTGTTGATCGTCTGGTGATGTTGGCGCTGGGCGCGGAGACACTGGCTGAAGTCATCGCCTTTAGCGTTGACCGGGCATAATTCTGAAAAATTACTGAATTAACAGCGAAGAATGGCGTGATAAGCGCCATTCTGTAGc                                                                                                                      >  2:677382/1‑143 (MQ=255)         ttAGGTGTTGATCGTCTGGTGATGTTGGCGCTGGGCGCGGAGACACTGGCTGAAGTCATCGCCTTTAGCGTTGACCGGGCATAATTCTGAAAAATTACTGAATTAACAGCGAAGAATGGCGTGATAAGCGCCATGCTGTAGCa                                                                                                                     >  2:193867/1‑143 (MQ=255)         ttAGGTGTTGATCGTCTGGTGATGTTGGCGCTGGGCGCGGAGACACTGGCTGAAGTCATCGCCTTTAGCGTTGACCGGGCATAATTCTGAAAAATTACTGAATTAACAGCGAAGAATGGCGTGACAAGCGACATTCTGTAGCa                                                                                                                     >  2:596394/1‑143 (MQ=255)            ggTGTAGATTGTCTGGTGATGTTGGCGCTTGGCGCGGAGACACTGGCTGAAGTCATCGCCTTTAGCGTTGACCGGGCATAATTCTGAAAAATTACTGAATTAACAGCGAAGAATGGCGTGATAAGCGCCATTCTGTAGCatat                                                                                                                  <  2:726088/143‑1 (MQ=255)              tgtTGATCGTCTGGTGATGTTGGCGCTGGGCGCGGAGACACTGGCTGAAGTCATCGCCTTTCGCGTTGACCGGGCATAATTCTGAAAAATTACTGAATTAACAGCGAAGCATGGCGTGATAAGCGCCATTCTGTAGCATATGt                                                                                                                <  1:658238/143‑1 (MQ=255)              tgtTGATCGTCTGGTGATGTTGGCGCTGGGCGCGGAGACACTGGCTGAAGTCATCGCCTTTAGCGTTGACCGGGCATAATTCTGAAAAATTACTGAATTAACAGCGAAGAATGGCGTGATAAGCGCCATTCTGTAGGAGATGt                                                                                                                >  2:211344/1‑143 (MQ=255)                ttGATCGTCTGGTGATGTTGGCGCTGGGCGCGGAGACACTGGCTGAAGTCATCGCCTTTAGCGTTGACCGGGCATAATTCTGAAAAATTACTGAATTAACAGCGAAGAATGGCGTGATAAGCGCCATTCTGTAGCATATGttt                                                                                                              >  1:700968/1‑143 (MQ=255)                      gTCTGGTGATGTTGGCGCTGGGCGCGGAGACACTGGCTGAAGGGATCGCCTTTAGCGATGACCGGGCATAATACTGAAAGATTACTGAATTAACAGCGATGAATGGGGTGATAAGCACCGGTCTGAAGCCTATGTTATcgctt                                                                                                        >  2:747924/1‑139 (MQ=255)                         tGGTGATGTTGGCGCTGGGCGCGTAGACACTGGCTGAAGTCATCGCCTTTAGCGTTGACCGGGCATAATTCTGAAAAATTACTGAATTAACAGCGAAGAATGGCGTGATAAGCGCCATTCTGTAGCATATGTTTTCATTTTTc                                                                                                     <  2:195179/143‑1 (MQ=255)                          ggTGATGTTGGCGCTGGGCGCGGAGACACTGGCTGAAGTCATCGCCTTTAGCGTTGACCGGGCATAATTCTGCAAAATTACTGAATTAACAGCGAAGAATGGCGTGATAAGCGCCATTCGGTAGCATATGTTTTCATTTTTcc                                                                                                    >  1:298144/1‑143 (MQ=255)                           gTGATGTTGGCGCTGGGCGCGGAGACACTGGCTGAAGTCATCGCCTTTAGCGTTGACCGGGCATAATTCTGAAAAATTACTGAATTAACAGCGAAGAATGGCGTGATAAGCGCCATTCTGTAGCATATGTTTTCATTTTTCCg                                                                                                   <  2:600402/143‑1 (MQ=255)                             gATGTTGGCGCTGGGCGCGGAGACACTGGCTGAAGTCATCGCCTTTAGCGTTGACCGGGCATAATTCTGAAAAATTACTGAATTAACAGCGAAGAATGGCGTGATAAGCGCCATTCTGTAGCATATGTTGTCATTTTTACGtt                                                                                                 >  2:620234/1‑143 (MQ=255)                                gTTGGCGCTGGGCGCGGAGACACTGGCTGAAGTCATCTCCTTTAGCGTTGACCGGGCATAATTCTGAAACATTACTGAATTAACAGCGAAGAATGGCGTGATAAGCGCCATTCTGTAGCATATGTTTTCATTTTTCCGTTaaa                                                                                              <  2:723563/143‑1 (MQ=255)                                gTTGGCGCTGGGCGCGGAGACACTGGCTGAAGTCATCGCCTTTAGCGTTGACCGGGCATAATTCTGAAAAATTACTGAATTAACAGCGAAGAATGGCGTGATAAGCGCCATTCTGTAGCATATGTTTTCATTTTTCCGTTaaa                                                                                              <  1:91080/143‑1 (MQ=255)                                 tgggCGCTGGGCGCGGAGACACTGGCTGAAGTCAGCGCCTTTAGCGTTGACCGGGCATAATTCTGAAAAATTACTGAATTAACAGCGAAGAATGGCGTGATAAGCGCCATTCTGTAGCATATGTTTTCATTTTTCCGTTAAAg                                                                                             <  1:382471/141‑1 (MQ=255)                                     cgcTGGGCGCGGAGACACTGGCTGAAGTCATCGCCTTTAGCGTTGACCGGGCATAATTCTGAAAAATTACTGAATTAACAGCGAAGAATGGCGTGATAAGCGCCATTCTGTAGCATATGTTTTCATTTTTCCGTTAAAGGCca                                                                                         <  2:320564/143‑1 (MQ=255)                                        tGGGCGCGGAGACACTGGCTGAAGTCATCGCCTTTAGCGTTGACCGGGCATAATTCTGAAAAATTACTGAATTAACAGCGAAGAATGGCGTGATAAGCGCCATTCTGTAGCATATGTTTTCATTTTTCCGTTAAAGGCCACaa                                                                                      >  1:604855/1‑143 (MQ=255)                                           gcgcGGCGACACTGGCTGAAGTCATCGCCTTTAGCGTTGACCGGGCATAATTCTGAAAAATTACTGAATTAACAGCGAAGAATGGCGTGATAAGCGCCATTCTGTAGCATATGTTTTCATTTTTCCGTTAAAGGCCACAAttt                                                                                   <  1:512261/143‑1 (MQ=255)                                               ggAGACACTGGCTGAAGTCATCGCCTTTAGCGTTGAGCGGGCATAATTCTGAAAAATTACTGAATTAACAGCGAAGAATGGCGTGATAAGCGCCATTCTGTAGCATATGTTTTCATTTTTCCGTTAAAGGCCATAATATAAGa                                                                               >  2:426198/1‑143 (MQ=255)                                                 agaCACTGGCTGAAGTCATCGCCTTTAGCGTTGACCGGGCATAATTCTGAAAAATTACTGAATTAACAGCGAAGAATGGCGTGATAAGCGCCATTCTGTAGCATATGTTTTCATTTTTCCGTTAAAGGCCACAATTTAAGACt                                                                             <  2:508758/143‑1 (MQ=255)                                                     acTGGCTGAAGTCATCGCCTTTAGCGTTGACCGGGCATAATTCTGAAAAATTACTGAATTAACAGCGAAGAATGGCGTGATAAGCGCCATTCTGTAGCATATGTTTTCATTTTTCCGTTAAAGGCCACAATTTAAGACTGGat                                                                         >  1:286701/1‑143 (MQ=255)                                                     acTGGCTGAAGTCATCGCCTTTAGCGTTGACCGGGCATAATTCTGAAAAATTACTGAATTAACAGCGAAGAATGGCGTGATAAGCGCCATTCTGTAGCATATGTTTCCCTCATGCCGTTAAAGGCCACAATCTAAGACTGGat                                                                         >  2:780045/1‑143 (MQ=255)                                                      cTGGCTGAAGTCATCGCCTTTAGCGTTGACCGGGCATAATTCTGAAAAATTACTGAATTAACAGCGAAGAATGGCGTGATAAGCGCCATTCTGTAGCATATGTTTTCATTTTTCCGTTAAAGGCCACAATTTAAGACTGGata                                                                        >  1:487218/1‑143 (MQ=255)                                                      cTGGCTGAAGTCATCGCCTTTAGCGTTGACCGGGCATAATTCTGAAAAATTACTGAATTAACAGCGAAGAATGGCGTGATAAGCGCCATTCTGTAGCATATGTTTTCATTTTTCCGTTAAAGGCCACAATTTAAGACTGGata                                                                        >  2:661981/1‑143 (MQ=255)                                                        ggCTGAAGTCATCGCCTTTAGCGTTGACCGGGCATAATTCTGAAAAATTACTGAATTAACAGCGAAGAATGGCGTGATAAGCGCCATTCTGTAGCATATGTTTTCATTTTTCTGTTAACGGCCACAATTTAAGACTGGATAtt                                                                      >  2:659316/1‑143 (MQ=255)                                                        ggCTGAAGTCATCGCCTTTAGCGTTGACCGGGCATAATTCTGAAAAATTACTGAATTAACAGCGAAGAATGGCGTGATAAGCGCCATTCTGTAGCATATGTTTTCATTTTTCCGTTAAAGGCCACAATTTAAGACTGGATAtt                                                                      <  1:397819/143‑1 (MQ=255)                                                           tGAAGTCATCGCCTTTAGCGTTGACCGGGCATAATTCTGAAAAATTACTGAATTAACAGCGAAGAATGGCGTGATAAGCGCCATTCTGTAGCATATGTTTTCATTTTTCCGTTAAAGGCCACAATTTAAGACTGGATATTTGa                                                                   <  2:145669/143‑1 (MQ=255)                                                           tGAAGTCATCGCCTTTAGCATTGACCGGGCATAATTCTGAAAAATTACTGAATTAACAGCGAAGAATGCCGTGATAAGCGCCATTCTGTAGCATATGTTTTCATTTTTCCGTTAAAGGCCACAATTTAAGACTGGATATTTGa                                                                   >  1:724743/1‑143 (MQ=255)                                                             aaGTCATCGCCTTTAGCGTTGACCGGGCATAATTCTGAAAAATTACTGAATTAACAGCGAAGAATGGCGcttatcacgccattcttcgctgttaattcagtaatttttcagaa                                                                                               >  1:635517‑M1/1‑69 (MQ=255)                                                             aaGTCATCGCCTTTAGCGTTGACCGGGCATAATTCTGAAAAATTACTGAATTAACAGCGAAGAATGGCGcttatcacgccattcttcgctgttaattcagtaatttttcagaa                                                                                               <  2:635517‑M1/113‑45 (MQ=255)                                                                    ggcgttgaGCGGTGGCCGGGCATAATTCTGAAAAATTACGGAATTAACAGCGAAGAATGGCGTGATAAGCGCCATTCTGTAGCAGATGTTTTCATTTTTCCGTTAAAGGCCACAATTTAAGACTGGATATTTGATATCATCCa                                                          <  1:793626/136‑1 (MQ=255)                                                                             cGTTGACCGGGCATAATTCTGAAAAATTACTGAATTAACAGCGAAGAATGGCGTGATAAGCGCCATTCTGTAGCATATGTTTTCATTTTTCCGTTAAAGGCCACAATTTAAGACTGGATATTTGATATCATCCAGGTATCAAt                                                 >  2:434569/1‑143 (MQ=255)                                                                              gTTGACCGGGCATGGTGCTGAAAAATTACTGAATTAACAGCGAAGAATGGCGTGATAAGCGCCATTCTGTAGCATATGTTTTCATTTTTCCGTTAAAGGCCACAATTTAAGACTGGATATTTGATATCATCCAGGTATCAAtt                                                <  2:230562/143‑1 (MQ=255)                                                                               ttGACCGGGCATAATTCTGAAAAATTACTGAATTAACAGCGAAGAATGGCGTGATAAGCGCCATTCTGTAGCATATGTTTTCATTTTTCCGTTAAAGGCCACAATTTAAGACTGGATATTTGATATCATCCAGGTATCAATTc                                               >  2:352340/1‑143 (MQ=255)                                                                                  aCCGGGCATAATTCTGAAAAATTACTGAATTAACAGCGAAGAATGGCGTGATAAGCGCCATTCTGTAGCATATGTTTTCATTTTTCCGTTAAAGGCCACAATTTAAGAATGGATCTTTGATATAATCAAGGTATCAACACTGt                                            >  1:615659/1‑143 (MQ=255)                                                                                    ggggCATAATTCTGAAAAATTACTGAATTAACAGCGAAGAATGGCGTGATAAGCGCCATTCTGTAGCATATGTTTTCATTTTTCCGTTAAAGGCCACAATTTAAGACTGGATATTTGATATCATCCAGGTATCAATTCTGTAt                                          <  2:587775/142‑1 (MQ=255)                                                                                    cGGGCATAATTCTGAAAAATTACTGAATTAACAGCGAAGAATGGCGTGATAAGCGCCATTCTGTAGCATATGTTTTCATTTTTCCGTTAAAGGCCACAATTTAAGACTGGATATTTGATATCATCCAGGTATCAATTCTGTAt                                          <  1:274268/143‑1 (MQ=255)                                                                                     gggCATAATTCTGAAAAATTACTGAATTAACAGCGAAGAATGGCGTGATAAGCGCCATTCTGTAGCAGATGTTTTCATTTCTCCGTTAAAGGCCACAATTTAAGACTGGATATTTGTTATCATCCAGGTATCAATTCTGTAtt                                         >  1:588829/1‑143 (MQ=255)                                                                                           aaTTCTGAAAAATTACTGTATTAACAGCGAAGAATGGCGTGATAAGCGCCATTCTGTAGCATATGTTTGCATTTTTCCGTTAAAGGCCACAATTTAAGACTGGATATTTGATATCATCCAGGTATCAATTCTGTATTGGtttt                                   <  2:774623/143‑1 (MQ=255)                                                                                             ttCTGAAAAATTACTGAATTAACAGCGAAGAATGGCGTGATAATCGCCATTCTGTAGCATATGTTTTCATTTTTCCGTTAAAGGCCACAATTCAAGACTGGATATTTGATATCATCCAGGTATCAATTCTGTATTGGTTTTTa                                 >  2:362116/1‑143 (MQ=255)                                                                                             ttCTGAAAAATTACTGAATTAACAGCGAAGAATGGCGTGATAAGcgccattcttcgctgttaattcagtaatttttcagaattatgcccggtcaacgctaaaggcgatgactt                                                               >  1:635517‑M2/1‑44 (MQ=255)                                                                                             ttCTGAAAAATTACTGAATTAACAGCGAAGAATGGCGTGATAAGcgccattcttcgctgttaattcagtaatttttcagaattatgcccggtcaacgctaaaggcgatgactt                                                               <  2:635517‑M2/113‑70 (MQ=255)                                                                                             ttCTGAAAAATTACTGAATTAACAGCGAAGAATGGCGTGATAAGCGCCATTCTGTAGCATATGTTTTCATTTTTCCGTTAAAGGCCACAATTGAAGACTGGATATTTGATATCATCCGGGTACCCATTCTGTATTGGTTTTTa                                 >  2:553407/1‑143 (MQ=255)                                                                                                tGAAAAATTACTGAATTAACAGCGAAGAATGGCGTGATAAGCGCCATTCTGTAGCATATGTTTTCATTTTTCCGTTAAAGGCCACAATTTAAGACTGGATATTTGATATCATCCAGGTATCAATTCTGTATTGGTTTTTACGc                              <  1:677382/143‑1 (MQ=255)                                                                                                 gAAAAATTACTGAATTAACAGCGAAGAATGGCGTGATAAGCGCCATTCTGTAGCATATGTTTTCATTTTTCCGTTAAAGGCCACAATTTAAGACTGGATATTTGATATCATCCAGGTATCAATTCTGTATTGGTTTTTACGct                             >  1:101177/1‑143 (MQ=255)                                                                                                  aaaaaTTACTGAATTAACAGCGAAGAATGGCGTGATAAGCGCCATTCTGTAGCATATGTTTTCATTTTTCCGTTAAAGGCCACAATTTAAGACTGGATATTTGATATCATCCAGGTATCAATTCTGTATTGGTTTTTACGctg                            >  1:455913/1‑143 (MQ=255)                                                                                                  aaaaaTTACTGAATTAACAGCGAAGAATGGCGTGATAAGCGCCATTCTGTAGCATATGTTTTCATTTTTCCGTTAAAGGCCACAATTTAAGACTGGATATTTGATATCATCCAGGTATCAATTCTGTATTGGTTTTTACGctg                            <  1:534594/143‑1 (MQ=255)                                                                                                       ttACTGAATTAACAGCGAAGAATGGCGTGATAAGCGCCATTCTGTAGCATATGTTTTCATTTTTCCGTTAAAGGCCACAATTTAAGACTGGATATTTGATATCATCCAGGTATCAATTCTGTATTGGTTTTTACGctgcctgc                       <  1:746197/143‑1 (MQ=255)                                                                                                          cTGAATTAACAGCGAAGAATGGCGTGATAAGCGCCATTCTGTAGCATATGTTTTCATTTTTCCGTTAAAGGCCACAATTTAAGACTGGATATTTGATATCATCCAGGTATCAATTCTGTATGGGTTTTTACGCTACCTGCTCa                    >  2:452412/1‑143 (MQ=255)                                                                                                                  aCAGCGTAGCATGGCGTGATCAGCGCCATTCTGTAGCATATGTTTTCATTTTTCCGTTAAAGGCCACAATTTAAGACTGGATATTTGATATCATCCAGGTATCAATTCTGTATTGGTTTTTACGCTGCCTGCTCAATGTTgcg            <  2:681211/143‑1 (MQ=255)                                                                                                                  aCAGCGAAGAATGGCGTGATAAGCGCCATTCTGTAGCATATGTTTTCATTTTTCCGTTAAAGGCCACAATTTAAGACTGGATATTTGATATCATCCAGGTATCAATTCTGTATTGGTTTTTACGCTGCCTGCTCAATGTTgcg            <  2:108082/143‑1 (MQ=255)                                                                                                                  aCAGCGAAGAATGGCGTGATAAGCGCCATTCTGTAGCATATGTTTTCATTTTTCCGTTAAAGGCCACAATTTAAGACTGGATATTTGATATCATCCAGGTATCAATTCTGTATTGGTTTTTACGCTGCCTGCTCAATGTTgcg            <  1:728661/143‑1 (MQ=255)                                                                                                                         agaaTGGCGTGATAAGCGCCATTCTGTAGCATATGTTTTCATTTTTCCGTTAAAGGCCACAATTTAAGACTGGATATTTGATATCATCCAGGTATCAATTCTGTATTGGTTTTTACGCTGCCTGCTCAATGTTGCgcagtgca     <  2:306064/143‑1 (MQ=255)                                                                                                                         agaaTGGCGTGATAAGCGCCATTCTGTAGCATATGTTTTCATTTTTCCGTTAAAGGCCACAATTTAAGACTGGATATTTGATATCATCCAGGTATCAATTCTGTATTGGTTTTTACGCTGCCTGCTCAATGTTGCgcagtgca     <  2:286701/143‑1 (MQ=255)                                                                                                                           aaTGGCGTGATAAGcgccattcttcgctgttaattcagtaatttttcagaattatgcccggtcaacgctaaaggcgatgacttcagccagtgtctccgcgcccagcgccaacatcaccagccgatcaacacctcatgccccgc   <  1:349302‑M2/143‑130 (MQ=255)                                                                                                                            acggCGTGATAAGCGCCACCCTGTAGCATATGTTTTCATTTTTCCGTTAAAGGCCACAATTTAAGACTGGACCTCTGATATCATCCAGGTATCAATTCTGTATTGGTTTTTACGCTGCCTGCTCAATGTTGCGCAGTGCAGtt  <  1:387001/141‑1 (MQ=255)                                                                                                                                 |                                                                                                                                          GCGTGGCATTAGGTGTTGATCGTCTGGTGATGTTGGCGCTGGGCGCGGAGACACTGGCTGAAGTCATCGCCTTTAGCGTTGACCGGGCATAATTCTGAAAAATTACTGAATTAACAGCGAAGAATGGCGTGATAAGCGCCATTCTGTAGCATATGTTTTCATTTTTCCGTTAAAGGCCACAATTTAAGACTGGATATTTGATATCATCCAGGTATCAATTCTGTATTGGTTTTTACGCTGCCTGCTCAATGTTGCGCAGTGCAGTT  >  NC_000913/4383529‑4383794

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.