| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 6 (0.150) | 26 (0.720) | 26/232 | NT | 83.5% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 5 (0.140) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
AAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAG > NC_000913/1209484‑1209760 | aaGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGGACCGGGACACCAACAGGTAGTGCAGAGCCTTCTCCCAAACCAACGTTTagg > 1:51376/1‑141 (MQ=255) tgcggcattccacccccactgaatgattactgattgctgaataccaccattcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGaaaa < 2:352248‑M2/12‑1 (MQ=255) gcggcattccactcccactgaatgatgactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgaggtttgctccttctcccaaaccaaCGTTTATGAAAAt < 1:584657‑M2/13‑1 (MQ=255) ggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttcctgcattgagttttgctccttctacgaacacaaCGTTTATGGACATga > 1:365196‑M2/129‑143 (MQ=255) ttccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtccgtcctaatgtagccgttgctgcattgagttttgctccttcccccaagacaaCCTTCATGAAAATgacgaa > 2:804136‑M2/125‑143 (MQ=255) cccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggcgcgtcctaatgtagccgttgctgcattgagattcgctccttctcccaaaccaaCGCTCATGAAAACGAAGAAATAAc > 2:655121‑M2/120‑143 (MQ=255) gggTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGGAGAAATAAcc > 1:424863/1‑142 (MQ=255) cactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATTAAAATGAAGAAATAACAAGc > 1:62198‑M2/116‑143 (MQ=255) aatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccataccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATg < 1:268235‑M2/33‑1 (MQ=255) tgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaacccaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGc < 1:520304‑M2/35‑1 (MQ=255) ttactgattgctcaataccaccaatcataaccggtatagctatgaaaacggtgcgtcctaatgtagccgttgctgcagtgagttttgctccttctcccaaaccaaCGTGTATGAAAATGAAGAAATAACAAGCAAATGGcatc > 2:217824‑M2/106‑143 (MQ=255) tgctcaacaccaccagtcctagccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccgtctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGc < 2:147841‑M2/46‑1 (MQ=255) ctcagtaccaccaatcagaaccggtatagctatgaaaccggtgcgtcctaatgtagccggtgctgcattgagttgtgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCtt < 1:773408‑M2/48‑1 (MQ=255) aacaccaccgaacagagccggtatagctatgaagccggggcgtcctaatggagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTa < 1:578719‑M2/51‑1 (MQ=255) aatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAAAGGCATCATTCCTGCTTTCACaaggggca > 2:723023‑M2/84‑141 (MQ=255) tcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGATATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGCGAtt > 2:77232‑M2/82‑143 (MQ=255) gccagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAATCCAACGTTTATGAACATGAAGAAATAATACTCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTaa < 1:341827/143‑1 (MQ=255) aaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTAGGAAAATGAAGAAATAACAAGCAAATGGCATCAGTCCTGCTTTTACCAGGGGGATTTAAc > 1:560938‑M2/78‑143 (MQ=255) atagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTa < 1:436707‑M2/73‑1 (MQ=255) gctatgaaaccggtacgtcctcatgtagccgttgctgcattgagtctttctcctgctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAAGTGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTg < 2:441857‑M2/76‑1 (MQ=255) ctatgaaacccgtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTgg < 2:123900‑M2/77‑1 (MQ=255) tgaaaccggtgcgtcccaatgtagccgtggctgcattgagttttgctcctccccccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTa < 2:614147‑M2/80‑1 (MQ=255) ggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTAcgc < 1:153073‑M2/87‑1 (MQ=255) gtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGCATGTAACATGCTTATTGGCTACGTCcgcg > 2:498523‑M2/56‑143 (MQ=255) gtcctaatgtagccgttgctgcattgagttttgctccttataccgatccagCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATc < 2:167344‑M2/92‑1 (MQ=255) tcctaatgtagccgttgctgcattgagtgttgctccttctcccaaaccaaCGATTATGAAAATGAAGAAATAACAAGCAAATGGCATAATTCCTGCTTTTAGCAAGGGGCTTGAACATGCTGATTGACTAGGTACGCGtataa > 2:524596‑M2/51‑141 (MQ=255) cctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATcaa > 1:1988‑M2/50‑143 (MQ=255) tagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCCATGTACGCGGCTGAACACATGa > 2:791800‑M2/43‑143 (MQ=255) tAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGTTATGTATGCGCATACACAAATGAAAAGAACACAGATCTa > 1:545019/1‑143 (MQ=255) tAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTa < 2:630207/143‑1 (MQ=255) ttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACCCAGATCTAcac > 1:76097‑M2/24‑142 (MQ=255) ctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTaa > 1:63473‑M2/19‑143 (MQ=255) ccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCACCAAATGACCAGAACACAGATCTACAACGTAATGCGCTGCActgta > 1:35866‑M2/5‑142 (MQ=255) aaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTCGCTATGTACGCGTATCAACAAATGACCAGAACACCGATCTACAACGTAATGCGCTGACCCGTGCa > 1:456572‑M2/3‑143 (MQ=255) aCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTCTGCAg > 1:177265‑M2/2‑143 (MQ=255) | AAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAG > NC_000913/1209484‑1209760 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |