New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4323298 =NA (NA)3 (0.080) 3/250 NT NA noncoding (1/36 nt) other REP324b
?NC_000913 4323328 = NA (NA)noncoding (31/36 nt) other REP324b

TGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTAGCGCGTTGTTCAGGCGGTCCAGGTCATCCAGCTGCGCCTGAATCTCGGTGGTTTTTGCCAGCTTGTCCTGCTCATTCAGTCCTTTATTGCTTTTCAC  >  NC_000913/4323197‑4323470
                                                                                                                                   |                                                                                                                                              
tGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTAc                                                                                                                                     <  1:236799/143‑1 (MQ=255)
ggcgcTTGGTGGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATTCGACCTACGAtttcc                                                                                                                                     <  2:752794/142‑3 (MQ=255)
     ttGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCAc                                                                                                                                >  1:394265/1‑143 (MQ=255)
     ttGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGAGTTACTGCAc                                                                                                                                >  1:690051/1‑143 (MQ=255)
            gggCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCAGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACTTACGATTTACTGCACCGCTTTa                                                                                                                         <  2:6738/143‑1 (MQ=255)
               cGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGGCCTCCGATTTCCTGCACCGCGTTtctc                                                                                                                      >  1:11184/1‑143 (MQ=255)
               cGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTc                                                                                                                      >  1:773371/1‑143 (MQ=255)
                      gatggtTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAAc                                                                                                               <  1:434720/143‑1 (MQ=255)
                       atggtTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGACCt                                                                                                              >  1:83314/1‑143 (MQ=255)
                         ggtTGGCAGGTCGGGCGCCGGGCGGGAGGCCGGACAGGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATGGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCa                                                                                                            <  2:512039/143‑1 (MQ=255)
                              gCATGTTTGGCTCCGGCCTGTAGGCCGGATAAGGTGCTTGCACCGCCTCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATcgcg                                                                                                       <  1:366143/143‑1 (MQ=255)
                                       gCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTcgcgcg                                                                                              >  2:215154/1‑143 (MQ=255)
                                        cTCCGGTCGGTCGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTAGCGCgt                                                                                             <  2:536443/143‑1 (MQ=255)
                                         cccGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTAGCGCgtt                                                                                            <  1:193357/142‑1 (MQ=255)
                                           cGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTAGCGCgttgt                                                                                          >  1:664779/1‑143 (MQ=255)
                                              tCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGGGCTTAGCGCGTTGTTCa                                                                                       >  1:454698/1‑143 (MQ=255)
                                                 gtgggCCGGGTATGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTAGCGCGTTGTTCAGGc                                                                                    <  2:405714/140‑1 (MQ=255)
                                                     gCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCAc                                                                                                                    <  1:710933/107‑1 (MQ=255)
                                                     gCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCAc                                                                                                                    >  2:710933/1‑107 (MQ=255)
                                                        ggATAGGGTGCGTGCACCGCATCCGGCATCAACGCCTGCGCATTGTCGGATGCGACGCCGGGTCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTAGCGCGTTGTTCAGGCGGTCCAg                                                                             <  2:46076/143‑1 (MQ=255)
                                                        ggATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTAGCGCGTTGTTCAGGCGGTCAAg                                                                             <  2:773371/143‑1 (MQ=255)
                                                         gATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACACATCGCGCTTAGCGCGTTGTTCAGGCGGTCCAgg                                                                            >  1:327087/1‑143 (MQ=255)
                                                          aTAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTAGCGCGTTGTTCAGGCGGTCCAGGt                                                                           >  2:683261/1‑143 (MQ=255)
                                                                 gCTTGCACCGCATCCGGCATCAACGCCGGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTCCTGCACCGCTTTACTCACCGAACTCATCGCGCTTAGCGCGTTGTTCAGGCGGTCCAGGTCATCCAg                                                                    <  1:291054/143‑1 (MQ=255)
                                                                    tGCAGCGCATCCGGCATCAACGCCTGCACATTGCCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTAGCGCGTTGTTCAGGCGGTCCAGGTCATCCAGCTg                                                                 <  2:250467/143‑1 (MQ=255)
                                                                       aCCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTAGCGGGTTGTTCAGGCGGTCCAGGTCGTGCAGCTgcgc                                                              >  1:704363/1‑143 (MQ=255)
                                                                       aCCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTAGCGCGTTGTTCAGGCGGTCCAGGTCATCCAGCTgcgc                                                              <  1:268163/143‑1 (MQ=255)
                                                                                ggCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTGGCGCGTTGTTCAGCCGGTCGAGGTCATCCAGCTGCGCCTGCAtctc                                                     >  2:197971/1‑143 (MQ=255)
                                                                                  cATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTAGCGCGTTGTTCAGGCGGTCCAGGTCATCCAGCTGCGCCTGAATCTCgg                                                   >  1:307675/1‑143 (MQ=255)
                                                                                   aTCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCATCTTATCCGACCTACGATTTACTGCACCGCTTTCCTCACCGAACTCATCGCGCTTAGCGCGTTGTTCAGGCGGTCCAGGTCATCCAGCTGCGCCTGAATGTCggc                                                  >  2:313841/1‑142 (MQ=255)
                                                                                    tCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTAGCGCGTTGTTCAGGCGGTCCAGGTCATCCAGCTGCGCCTGAATCTCggtg                                                 >  1:588675/1‑143 (MQ=255)
                                                                                       aCGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTAGCGCGTTGTTCAGGCGGTCCAGGTCATCCAGCTGCGCCTGAATCTCggtggtc                                              >  2:514660/1‑142 (MQ=255)
                                                                                       aCGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATACGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTAGCGCGTTGTTCAGGCGGTCCAGGTCATCCAGCTGCGCCTGAATCTCGGTGGtt                                              <  1:669798/143‑1 (MQ=255)
                                                                                          ccTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTAGCGCGTTGTTCAGGCGGTCCAGGTCATCCAGCTGCGCCTGAATCTCGGTGGttttt                                           <  1:789671/143‑1 (MQ=255)
                                                                                           cTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTAGCGCGTTGTTCAGGCGGTCCAGGTCATCCAGCTGCGCCTGACTCTCGGTGGttctgg                                          >  2:28173/1‑139 (MQ=255)
                                                                                              cacaTTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTAGCGCGTTGTTCAGGCGGTCCAGGTCATCCAGCTGCGCCTGAATCTCGGTGGTCTTTGCCa                                       >  2:455483/1‑143 (MQ=255)
                                                                                                 aTTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTAGCGCGTTGTTGAGGGGGTCCAGGTCATGCAGCTGCGCCTGAGTCTCGGTGGTGTTTGCCAGCt                                    >  1:429021/1‑143 (MQ=255)
                                                                                                         ataagacgccccggcgtcgcatccgaCCTACGATTTACTGCACCGCTTTa                                                                                                                         <  2:8085‑M2/24‑1 (MQ=255)
                                                                                                         ataagacgccccggcgtcgcatccgaCCTACGATTTACTGCACCGCTTTa                                                                                                                         >  1:8085‑M2/27‑50 (MQ=255)
                                                                                                          taagacgccccggcgtcttatccgaCCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTAGCGCGTTGTTCAGGCGGTCCAGGTCATCCAGCTGCGCCTGAATCTCGGTGGTCTCTGCCAGCTTGTACTGCt                           >  2:230934‑M2/26‑143 (MQ=255)
                                                                                                           gCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTAGCGCGTTGTTCAGGCGGTCCAGGTCATCCAGCTGCGCCTGAATCTCGGTGGTCTCTGCCCGCTTGTCCTGCta                          >  2:756830/1‑142 (MQ=255)
                                                                                                                         tCTTATCCGACCTACGATTTACTGCACCGCTTTACTCCCCGAACTCATCGCGCTTAGCGCGTTGTTCAGGCGGTCCAGGTCATCCAGCTGCGCCTGAATCTCGGTGGTCTGTGCAACCTTGACGCGCTCATTCAGcccctcat            >  2:329323/1‑138 (MQ=255)
                                                                                                                                 gaCCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTAGCGCGTTGTTCAGGCGGTCCAGGTCATCCAGCTGCGCCTGAATCTCGGCGGTTGTTGCACGCTTGTCCTGCTCATTCAGGCCTTTATTGCTTTTc    >  2:66534‑M2/3‑143 (MQ=255)
                                                                                                                                   CCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTAGCGCGTTGTTCAGGCGGTCCAGGTCATCCAGCTGCGCCTGAATCTCGGTGGTTTTTGCCAGCTTGTCGTGCTCATTCAGTCCTTTATTGCTTTTCAc  >  1:775609‑M2/1‑143 (MQ=255)
                                                                                                                                   |                                                                                                                                              
TGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTAGCGCGTTGTTCAGGCGGTCCAGGTCATCCAGCTGCGCCTGAATCTCGGTGGTTTTTGCCAGCTTGTCCTGCTCATTCAGTCCTTTATTGCTTTTCAC  >  NC_000913/4323197‑4323470

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.