Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 595,519 | T→A | 7.9% | intergenic (‑76/‑81) | cusR ← / → cusC | DNA‑binding transcriptional activator CusR/copper/silver export system outer membrane channel |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 595,519 | 0 | T | A | 7.9% | 127.0 / 2.5 | 47 | intergenic (‑76/‑81) | cusR/cusC | DNA‑binding transcriptional activator CusR/copper/silver export system outer membrane channel |
Reads supporting (aligned to +/- strand): ref base T (19/24); new base A (2/2); total (21/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.68e-01 |
GTTAACCCTTTGGTCAAGTATTCTCCGGTTTTCTTTTCATCTTCGACAATCAACAGTTTCATATTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGCCTATGTCTCCTTGTAAACTTCTGCCATTTTGTGTGGCCCTTGCGCTAACCGGTTGTTCACT > NC_000913/595382‑595658 | gTTAACCCTTTGGTCAAGTATTCTGCGGTTTTCTTTTCATCTTGGACAATCAACAGTTTCATATTTGCTCCGCATGTTGCCCGGGCAAATCTAGAGTAGCGGGATCCCATGGCAATGTCTTATTGGAAAAAGGAACATTTTGt > 2:456526/1‑143 (MQ=255) ccTTTGGTCAAGTATTCTCCGGTTTTCTTTTCATCTTCGACAATCAACAGTTTCATATTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAAAATTGTCAtttt < 2:392183/143‑1 (MQ=255) tttGTTCAATTATTCTCCGGTTTTCTTTACAACGACGACAAGCAACAGGCTCATATTGCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAAAATTGTCAttttgc < 1:5884/143‑3 (MQ=255) ggTCAAGTATTCTCCGGTTTTCTTTTCATCTTCGACAATCAACAGTTTCATATTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGt < 1:61528/143‑1 (MQ=255) aGTATTCTCCGGTTTTCTTTTCATCTTCGACAAGCAACGGGTTCATATTTCCTCCGCATGTTGCCCGGGCACTTCTAGAGTAGCGGGATCAGATTGCACTCGCTTATTCGTAAAGTTACAAATTTGTCCTTTTTCTGCCAGCg > 2:704181/1‑143 (MQ=255) actctcCGGTTTTCTTTTCATCTTCGACAATCAACAGTTTCATATTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGaa < 1:537246/141‑1 (MQ=255) ttCCCCGGTTCTCTTTTCATCTTCGACAATCAACAGTTTCATATTTCCGCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGaaa < 2:456796/143‑1 (MQ=255) tctcCGGTTTTCTTTTCATCTTCGACAATCAACAGTTTCATATTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACACTTTTGTCATTTTTCTGTCACCGGgaaa > 1:104728/1‑143 (MQ=255) tctcCGGTTTTCTTTTCATCTTCGACAATCAACAGTTTCATATTTCCTCCCCATGTTGCCCGTGCCATTCTCGAGTAGCGTGATCAGATGGCAATCGCTTCTTGGCAAACTCCCAATTCTGTCATCTTTCTTTCACCGGacaa > 2:376819/1‑143 (MQ=255) tcCGGTTTTCTTTTCATCTTCGACAATCAACAGTTTCATATTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATc > 2:186503/1‑143 (MQ=255) ccGGTTTTCTTTTCATCTTCGACAATCAACAGTTTCATATTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCa < 1:120627/143‑1 (MQ=255) gttcttcttttcATCTTCTACAAGCAACAGTTTCATATTTCCTCCGCATGTTGCCCTGGCAATTCTAGAGTAGCGGGTTCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCaga < 2:83543/139‑1 (MQ=255) ttcttttcATCTTCGACAATCAACAGTTTCATATTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCt > 1:446816/1‑143 (MQ=255) ttttcATCTTCGACAATCAACAGTTTCATATTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCCGATGGCAATCGCTCATTGGCAAAATGACAATTTTGTCCTTTTTATGTCGCCGGAGACTCAGAGccacgc > 2:731169/1‑139 (MQ=255) ttcATCTTCGACAATCAACAGTTTCATATTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGa < 1:186503/143‑1 (MQ=255) aTCTTCGACAATCAACAGTTTCATATTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAAGCAGGGCATGGCGAGTa > 2:674174/1‑143 (MQ=255) tCTTCGACAATCAACAGTTTCATATTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTaa > 2:453830/1‑143 (MQ=255) cTTCGAGAATCACCGGTTTAATATTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTaaa < 2:729667/143‑1 (MQ=255) ttCGACAATCAACAGTTTCATATTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAg > 1:264773/1‑143 (MQ=255) tCGACCATCAACCGTTTCATATTGCCTCCGCATGTTGCCCGGGCAAGTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGt < 2:636960/143‑1 (MQ=255) cAACGGCTTCACATTTCCTCCGCATCTTGCCCGGGCAATGCGAGATTAGCGGGAGCAGATTGCAACCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCa < 2:11812/143‑1 (MQ=255) tttCATATTCCCTCCGCCTGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAAt < 1:293174/143‑1 (MQ=255) tccacacttCCTGCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATc < 1:291616/136‑1 (MQ=255) tCATATTTCCTCCGCTTGTGGACCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCa < 2:485226/143‑1 (MQ=255) tcctccGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGaaa > 2:147290/1‑143 (MQ=255) cctccGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGGAAATCAGAGCCTGGCGAGTAAAGTTGGAGGCGTAAGATCACCAGaagt > 1:152089/1‑141 (MQ=255) cctccGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGCGTACTGTTGGCGGCATAAAATCACCAGAAAt > 1:443007/1‑143 (MQ=255) tcggCATGTTGCCCGGGCAGTTCTAGAGTGGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAAGCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTa < 2:555924/140‑1 (MQ=255) cGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATGACCAGAAATTATg > 2:389020/1‑143 (MQ=255) aTGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGc < 1:529787/143‑1 (MQ=255) cgggacaTTCTTGAGTGGTGGGATCGTATGGCAATCCCTTATTGGCAAAATCACAATGTTGGCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGCCTATGtct < 2:527349/137‑1 (MQ=255) cGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTGTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTACGAGCCTATGtca > 2:30507/1‑142 (MQ=255) ggCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGCCTATGTCTcc < 2:519647/143‑1 (MQ=255) cAATTCTAGAGAAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGCCTATGTCTCCtt < 1:551452/143‑1 (MQ=255) aaTTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACGATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGGGCCTATGTCACCtgg > 2:137844/1‑141 (MQ=255) gagTAGCGTGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGCCTATGTCTCCTTGTAAACtt < 2:585154/143‑1 (MQ=255) gCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGCCTATGTCTCCTTGTAAACTTCTGcc > 2:657109/1‑143 (MQ=255) ggATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGCCTATGTCTCCTTGTAAACTTCTGCCAtt < 1:671519/143‑1 (MQ=255) acggCAATCGCTTATTGGCAAAATAACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGCCTATGTCTCCTTGTAAACTTCTGCCATTTtgtgtg < 2:229460/141‑1 (MQ=255) gggCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTGCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGCCTATGTCTCCTTGTAAACTTCTGCCATTTTGTGTgg < 2:147788/142‑1 (MQ=255) cggttATTGGCAAAATGACAATTTTGTCATTGTTCTGTCAGCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGCCTATGTCTCCTTGTAAACTTCGGCCATTTTGTGTGGCCCTTgc < 2:718382/140‑1 (MQ=255) cGCTGATTGGCAAAATGACAATTTTGTCATGTGTCTGTCGCCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGCCTATGTCTCCTTGTAAACTTCTGCCATTTTGTGTGGCCCTTgc < 2:366861/143‑1 (MQ=255) cTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGCCTATGTCTCCTTGTAAACTTCTGCCATTTTGTGTGGCCCTTgcgc > 1:801987/1‑143 (MQ=255) agaaaaaTGACAAAATTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGCCTATGTCTCCTTGTAAACTTCTGCCATTTTGTGTGGCCCTTGCGCTAACCg > 2:173328/4‑143 (MQ=255) aaaaTGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGCCTATGTCTCCTTGTAAACTTCTGCCATTTTGTGTGGCCCTTGCGCTAACCGgtt < 1:363571/143‑1 (MQ=255) cAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGCCTATGTCTCCTTGTAAACTTCTGCCATTTTGTGTGGCCCTTGCGCTAACCGGTTGTTCACt > 1:282808/1‑143 (MQ=255) cAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGCCTATGTCTCCTTGTAAACTTCTGCCATTTTGTGTGGCCCTTGCGCTAACCGGTTGTTCACt > 1:296974/1‑143 (MQ=255) | GTTAACCCTTTGGTCAAGTATTCTCCGGTTTTCTTTTCATCTTCGACAATCAACAGTTTCATATTTCCTCCGCATGTTGCCCGGGCAATTCTAGAGTAGCGGGATCAGATGGCAATCGCTTATTGGCAAAATGACAATTTTGTCATTTTTCTGTCACCGGAAAATCAGAGCCTGGCGAGTAAAGTTGGCGGCATAAAATCACCAGAAATTATGAGCCTATGTCTCCTTGTAAACTTCTGCCATTTTGTGTGGCCCTTGCGCTAACCGGTTGTTCACT > NC_000913/595382‑595658 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |