| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 4,159,079 | G→T | 100% | G197V (GGT→GTT) | oxyR → | DNA‑binding transcriptional dual regulator OxyR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,159,079 | 0 | G | T | 100.0% | 166.7 / ‑6.7 | 53 | G197V (GGT→GTT) | oxyR | DNA‑binding transcriptional dual regulator OxyR |
| Reads supporting (aligned to +/- strand): ref base G (1/1); new base T (26/25); total (27/26) | |||||||||||
| Rejected as polymorphism: E-value score below prediction cutoff. | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
GAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGG > NC_000913/4158946‑4159219 | gAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGTTCACTGttt < 1:580878/143‑1 (MQ=255)gAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGTTCACTGttt < 1:270102/143‑1 (MQ=255) tcattGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTTGCTAGCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGTTCACTGTTTGcgcggt > 1:377896/1‑141 (MQ=255) cattGAAGGGCCGTTGTTTGATGAGCCAATGTTGCTTGCTATCTATGTAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGTTCACTGTTTGCGCGATc < 2:253681/143‑1 (MQ=255) cagtGATGTGCCGTGGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGTTCACTGTTTGCGCGATc < 2:252966/140‑1 (MQ=255) attGAAGTGTCGTTGTGTGAGTAGCTGATGGTGGTGGCTATCTATGGAGATGACCCGTGGGCGAACCGCGAATGCGTTCCGAGGGCCGATCTTGCAGGGGAAAAACTGCTGATGCTGGAAGATGTTCACTGTTTGCGCGATCa < 2:599375/143‑1 (MQ=255) gTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGTTCACTGTTTGCGCGATCAGGCAAt > 1:512701/1‑143 (MQ=255) cGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAACAACTGCTGATGCTGGAAGATGTTTACTGTTTGCGCGATCAGACAATGGGt > 1:409853/1‑143 (MQ=255) cGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGTATACTGTATGAGCGAACAAGCAATggga > 1:410403/1‑142 (MQ=255) gttgttTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGACGATGTTCACTGTTTGCGCGGTCAGGCAATGGGtt > 1:126273/1‑143 (MQ=255) ttgttTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGTTCACTGTTTGTGCGATCAGGCAATGGGttt < 1:535873/143‑1 (MQ=255) gatgaGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGTTCCCTGTTTGCGCGCTCAGGCAATGGGTGGCTGttt > 1:190017/1‑143 (MQ=255) gatgaGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGTTCACTGTTTGCGCGATCAGGCAATGGGGTTCTGttt > 1:421709/1‑143 (MQ=255) aGCCAATGTTGCTGGCTATCGATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGTTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGaa < 1:103023/143‑1 (MQ=255) ggcgaggTTGCTGGGTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGTTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAg < 2:121300/137‑1 (MQ=255) gCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGTTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAg < 1:39542/143‑1 (MQ=255) gCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGTTCACTGTTTGCGCGATCAGGAAATGGGATTCTGTTTTGAAg > 1:273691/1‑143 (MQ=255) ccAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGTTCACTGTTTGCGCGATCAGGCAATGGGGTTCTGTTTTGAAGc > 1:310679/1‑143 (MQ=255) aaTGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGTTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCg < 1:510415/143‑1 (MQ=255) aTGTTGCTGGCCATGTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGTTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCgg < 1:378522/143‑1 (MQ=255) tGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTTCTGATGCTGGAAGATGTTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCggg > 1:272101/1‑143 (MQ=255) ttGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGTTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGc > 1:466193/1‑143 (MQ=255) ctatctatGAAGATCACCCGTAGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGTTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGaa < 1:211963/143‑1 (MQ=255) tatctatGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGTTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAg < 1:305645/143‑1 (MQ=255) ctctatGCAGAGCACCTGCGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGTTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGa < 2:40426/142‑1 (MQ=255) atGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGTTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATaca > 1:199832/1‑143 (MQ=255) atGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGTTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGGTTTGAAGCCGGGGCGGATGAAGCTaca > 1:44896/1‑143 (MQ=255) aGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGTTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACt > 1:555964/1‑143 (MQ=255) ccACCCGTGGGCGAACCGCGCATGCGTACCGATGGCCGATCTGGCAGGGGAAACACTGCTGATGCTGGAAGATGTTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTcc < 1:658261/142‑1 (MQ=255) ccGTGGGCGAACCGCGAATGCGTACCGATGGCCGGTCTGGCAGGGGAAAAACTGCTGATGCTGATAGGTGGTCGCTGTTTGCGCGATCAGGCAACGGGGTTCTGTTTTGAGGCCGGGGCGGCTGAAGATGCACACTTCcgcgc > 2:12213/1‑143 (MQ=255) tGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGTTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGAc > 1:141310/1‑143 (MQ=255) gCGAACCGCGCATGCGGACCGCTGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGTTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAg < 2:613820/143‑1 (MQ=255) gCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGTTCACTGTTTGCGCGATCAGGCAATGGGGTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAg > 2:254955/1‑143 (MQ=255) cgcgAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGTTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGa > 1:781047/1‑143 (MQ=255) gcgGATGTGGACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCGTGAAGATGTTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGaa < 2:643261/143‑1 (MQ=255) cGTACCGATGGCCGATCTGGCAGGGGAAAAACTTCTGATGCTGGAAGATGTTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTgc < 2:272101/143‑1 (MQ=255) ggaCCGATGGTCGATCGGGCCGGGGAAAAACTGCTGATGCTGGAAGATGTTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTgcg < 2:670039/141‑1 (MQ=255) gCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGTTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACAtggt > 1:578132/1‑143 (MQ=255) gCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGTTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACAtggt < 1:265617/143‑1 (MQ=255) cGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGTTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGCGGGATGACGGTACACACTTCCGCGCGACCCGCCTGGAAAATCGGCGCGGCAtggtgg > 2:645148/1‑143 (MQ=255) ggCAGGGGAAAAACTGCTGATGCTGGAAGATGTTCACTGTTTGCGCGATCAGGCAATGGGTTCCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAg < 1:405979/143‑1 (MQ=255) ggCAGGGGAAAAACTGCTGATGCTGGAAGATGTGCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATGCACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAg < 1:767112/143‑1 (MQ=255) gCAGGGGAAAAACTGCTGATGCTGGAAGATGTTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCACCATGGTGGCGGCAgg > 1:477516/1‑143 (MQ=255) aGGGGAAAAACTGCTGATGCTGGAAGATGTTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGCTGAAGATACACACTTCCGCGCGACCAGCCTGGGAACTCTGCGCAACATGGTGGCGGCAGGtc > 2:727507/1‑142 (MQ=255) aagctgctgATGCTGGAAGATGTTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGAt < 1:704233/140‑1 (MQ=255) aaaCTGCTGATGCTGGAAGATGTTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACCCTGCGCGACATGGGGGCGGCCGGTAGCGGGAt > 2:379874/1‑143 (MQ=255) gccgatgatGGAAGATGTTCACCGTTTGCGCGATCAGGCAATGGGTTGCTGTTTTGAAGCCGGGGCGGATGAAGATACACCCTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACtt < 1:175143/140‑1 (MQ=255) ctgATGCTGGAAGATGTTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACttt > 1:11230/1‑143 (MQ=255) gCTGGAAGATGTTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATacaca > 1:757188/1‑75 (MQ=255) gCTGGAAGATGTTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATacaca < 2:757188/75‑1 (MQ=255) ggAAGATGTTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTAGCGGCAGGTAGCGGGAACACTTTACTACCAg > 1:268336/1‑143 (MQ=255) aaGATGTTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTCCTGCCAgcg > 2:438290/1‑143 (MQ=255) tGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCgctgg < 2:618326/143‑1 (MQ=255) | GAAGCATTCATTGAAGTGCCGTTGTTTGATGAGCCAATGTTGCTGGCTATCTATGAAGATCACCCGTGGGCGAACCGCGAATGCGTACCGATGGCCGATCTGGCAGGGGAAAAACTGCTGATGCTGGAAGATGGTCACTGTTTGCGCGATCAGGCAATGGGTTTCTGTTTTGAAGCCGGGGCGGATGAAGATACACACTTCCGCGCGACCAGCCTGGAAACTCTGCGCAACATGGTGGCGGCAGGTAGCGGGATCACTTTACTGCCAGCGCTGG > NC_000913/4158946‑4159219 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |