New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	566777 =	NA (NA)	1239 (43.470)	234/262	NT	98.0%	noncoding (1/1258 nt)	IS3	repeat region
	?	NC_000913	= 572471	25 (0.870)					coding (6/456 nt)	ybcN	DLP12 prophage; DNA base‑flipping protein

AAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAG  >  NC_000913/566637‑566903                                                                                                                                             |                                                                                                                               aaGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGGATGACGGTCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGGAACCGTAATCTGa                                                                                                                              >  1:157945/1‑143 (MQ=255)   gATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATc                                                                                                                            <  1:93679/143‑1 (MQ=255)       gCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTAc                                                                                                                        >  1:489947/1‑143 (MQ=255)                aaaGCTAAGTGCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATa                                                                                                               <  1:201981/143‑1 (MQ=255)                 aggCTAATTGCGGTCAGAAAGGAGCTAGTGTATGACGGGCAAAGATGCTATTATTCATTACCTGGGGACGCATAAGAGCCTCTGCTCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCGTACCCAGCAATAg                                                                                                              <  2:561382/141‑1 (MQ=255)                        gTTCGGACTGAAAGGAGCAAGTGTATGACGGGGGGAGAGGCAATTAGTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGacac                                                                                                       <  2:250851/143‑1 (MQ=255)                           cGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTCTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACAcgcg                                                                                                    >  1:5302/1‑143 (MQ=255)                              attGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCt                                                                                                 >  2:380161/3‑143 (MQ=255)                                  aaaGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGt                                                                                             >  1:307149/1‑143 (MQ=255)                                      gAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACCTTGCCGCGGTAACAGGCGCAACCGTCATCTGATCTTACCACGCAATAGGCGACACACGCCCAAGTGAGt                                                                                         >  2:63710/1‑143 (MQ=255)                                          aaGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAAc                                                                                     >  1:439066/1‑143 (MQ=255)                                           aGTGTATGGCGGGCACGGAGGCACGTAGTCATTGCCTGGGTACGCAGAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAAct                                                                                    <  2:568557/143‑1 (MQ=25)                                             tgtATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct                                                                                  <  1:141298/143‑1 (MQ=255)                                             tgtATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAActct                                                                                  <  1:105709/143‑1 (MQ=255)                                              gtATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAAAAGGAGTTACCATAAGCTGATCTTACCCAGCCATAGTGGACACGCGGCTAAGTGAGTAAACtctc                                                                                 >  1:564547/1‑143 (MQ=37)                                               taggACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtca                                                                                <  2:440845/140‑1 (MQ=255)                                                  gACGGGCAAAGAGGCAATTATTCATTACCGGGGGACGCATAAGCGCCTCTGTGCACAGGACATAAAGGCGGTATCAGGCGCAACGGTAATCTGATGTTACCCCGCAATAGTGGACCCGCGGCTAAATGAGTGAACTCtcagtc                                                                             >  2:374626/1‑143 (MQ=255)                                                       gCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGCgg                                                                        >  2:179583/1‑143 (MQ=255)                                                                cagttattCATGACCGGGGGACGCAGAAGAGCTGCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTAACCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTcaca                                                               <  2:105706/140‑1 (MQ=25)                                                                           tatcTGGAGACGCATAAGGGCTTCTGTGCACATGTCGTTGCCGTGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGCGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACa                                                    <  2:488691/140‑1 (MQ=18)                                                                               tGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTACGTGAGTAACCTCTCAGTCAGAGGTGACGCACATGACAAAAACAGTAt                                                >  1:439505/1‑143 (MQ=255)                                                                                  ggACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCaa                                             >  1:255904/1‑143 (MQ=255)                                                                                     cGCATAAGTGCTTCTGGGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCa                                          <  1:554316/143‑1 (MQ=255)                                                                                     cGCACAAGAGCTGATGTGAACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCa                                          <  2:26772/143‑1 (MQ=255)                                                                                        aTAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTa                                       >  1:497425/1‑143 (MQ=255)                                                                                          aaGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTaaa                                     >  2:422213/1‑143 (MQ=255)                                                                                           agagCGTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAAGCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAAGAGTAACAACCAGaaata                                    >  2:560849/1‑141 (MQ=18)                                                                                            gagCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACCTGACAAAAACAGTATCAAGCAGTacaaa                                   >  1:408964/1‑143 (MQ=255)                                                                                                ttCTGTGCACAGGACGTTGCCGCGGTAACACGCGCAACCGGAATCTTATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAAccc                               >  1:294453/1‑143 (MQ=255)                                                                                                            gACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATCGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACGCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCAt                   >  2:463690/1‑143 (MQ=255)                                                                                                                ttGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGc               <  1:422213/143‑1 (MQ=255)                                                                                                                  gCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACCCACATGACAAGAACAGGATCAACCCGGAGAGAACCCCGTAAACAGCGATCGccc             >  2:531242/1‑142 (MQ=14)                                                                                                                    cgcgGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGa           >  1:332919/1‑143 (MQ=255)                                                                                                                    cgcgGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACCCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGGAAAGAACCCCGGAAACAGCATTCGCCTGa           >  2:320997/1‑143 (MQ=255)                                                                                                                             aGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTGTCAGTCAGAGGTGACTCACATGACAACAACAGTATCAACCAGAAAAAAACCCAGGAAACAGCATGAGACTAAATTTGGCAg  >  1:249488/1‑143 (MQ=11)                                                                                                                                             |                                                                                                                               AAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAG  >  NC_000913/566637‑566903

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.