| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 882,734 | T→C | 14.9% | M1M (ATG→GTG) † | deoR ← | DNA‑binding transcriptional repressor DeoR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 882,734 | 0 | T | C | 14.9% | 52.4 / 3.8 | 27 | M1M (ATG→GTG) † | deoR | DNA‑binding transcriptional repressor DeoR |
| Reads supporting (aligned to +/- strand): ref base T (12/11); new base C (2/2); total (14/13) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.70e-02 | |||||||||||
CGCACTGTGGTTGTTCAGATCGCGACGAATCGTCATCTCCGAAACCCCAAGCAGGGCGGCGGCGTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCGACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACGCACCCAGCCTTTGCGGATCGGTAATGCAAAACAGACGCGATACCACGATTGCAGACGTTGATAGAGTTTATGCCC > NC_000913/882594‑882875 | cgcACTGTGGTTGTTCAGATCGCGACGAATCGTCATCTCCGAAACCCCAAGCAGGGCGGCGGCGTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCGGCTTCTTTCAAtga > 2:69481/1‑141 (MQ=255) cACTGTGGTTGTTCAGATCGCGACGAATCGTCATCTCCGAAACCCCAAGCAGGGCGGCGGCGTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCGACGTGTTTCCATAATc > 1:118793/1‑143 (MQ=255) ggcATCTCCGAAACCCCAAGCAGGGCGGCGGCGTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCGACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCt < 1:257132/141‑1 (MQ=255) tCATCTCCGAAACCCCAAGCAGGGCGGCGGCGTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCGACGTGTTTCCATAATCCCTCTGAATAGTTATTCACGCGAGCCGCTc > 1:427307/1‑143 (MQ=255) tCATCTCCGAAACCCCAAGCAGGGCGGCGGCGTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCGACGTGTTTCCACAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTc > 2:151898/1‑143 (MQ=255) tCATCTCCGAAACCCCAAGCAGGGCGGCGGCGTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCGACGTGTTTCCACAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTc > 2:436407/1‑143 (MQ=255) tcCGAAACCCCAAGCAGGGCGGCGGCGTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCGACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAAtac > 1:314385/1‑143 (MQ=255) tcCGAAACCCCAAGCAGGGCGGCGGCGTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCGACGTGTTTCCATAATACCACTAAATAGTTATTGAAGCGAGCCGCTCAAtac > 1:268665/1‑143 (MQ=255) ccAAGCAGGGCGGCGGCGTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCGACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCGCAATACTACACtttt > 1:328038/1‑143 (MQ=255) ccAAGCAGGGCGGCGGCGTCTTTAAGATGTAACTTATCGCTGCGATTTAACTCTGGCAGCAGCTGCCCGATACGCTCTTCGCGACGTGTTCCCATAACCCCTCTGAATAGTTATCGAAGCGAGCGCCCCGAtactacccctgt > 2:447070/1‑137 (MQ=255) catgtcggcggcgTCTTTAAGATGTAACATATCGCTGCGTTTTGATTCTTTTAGCAGCTGCCCGATACGCTCTTCGCGACGTGTTTCCATAATCCCTATGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCa < 2:406622/138‑1 (MQ=255) gcggcggcgTCTTTAAGATGTAACTTATCGCTGCGCTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCGACGTGTTTCCATAATCCCTCTGAATAGCTATTGAAGCGAGCCGCTCAATACTACACTTTTTATCAgaga > 2:32355/1‑143 (MQ=255) gcggcgTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCGACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCa < 1:54559/143‑1 (MQ=255) gTCTTTAAGATGTAACTTATCGCTGCGTGATAAGCCTTACAGCAGCTTCCCGATACGCTCTTCGCGACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCAc < 1:354608/143‑1 (MQ=255) tCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCGACGTGTTTCCATAATCCCTCTGAATAGTTATTGCAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACg > 2:474089/1‑143 (MQ=255) ccTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCGACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACg < 2:371207/142‑1 (MQ=255) ttACGACGTAACTTATCGCTGCGTTTTAGTCCTTGCAGCACCTGCCCGATACGCTCTTCGCGACGTCTTTCCATAATCCCTCTGAATAGTTATTGTAGCGCGCAGCAGCAACCAGCGTGTTTTAGCAGAGATCAGTCACGCAc < 2:314385/143‑1 (MQ=255) tAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCGACGTGTTTCCACAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACGCACCCAGCCTTTGCGGATCGGTAATGCaa < 1:151898/143‑1 (MQ=255) tAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCGACGTGTTTCCACAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACGCACCCAGCCTTTGCGGATCGGTAATGCaa < 1:436407/143‑1 (MQ=255) aTTCTTGCAGCAGCTGCCCGATACGCTCTTCGCGACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACGCACCCAGCCTTTGCGGATCGGTAATGCaaaa < 1:492398/143‑1 (MQ=255) gcagcTGCCCGATACGCTCTTCGCGACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACGCACCCAGCCTTTGCGGCTCGGTAATGTCAACCAGAcgcca > 1:30267/1‑141 (MQ=255) gcagcTGCCCGATACGCTCTTCGCGACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACGCACCCAGCCTTTGCGGATCGGTAATGCAAAACAGACGCGa < 1:392721/143‑1 (MQ=255) cccGATACGCTCTTCGCGACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCACTACTACACTTTTTAGTTGGTGTAGCTCACGCACCCACCCTTTGCGGATCGGTAATGCAAAACAGACGCGATACCCCg > 1:564308/1‑143 (MQ=255) cccGATACGCTCTTCGCGACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACGCACCCAGCCTTTGCGGATCGGTAATGCAAAACAGACGCGATACCACg < 1:474089/143‑1 (MQ=255) cgcgACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACGCACCCAGCCTTTGCGGATCGGTAATGCAAAACAGACGCGATACCACGATTGCAGACGTTGa > 1:330536/1‑143 (MQ=255) ttCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACGCACCCAGCCTTTGCGGATCGGTAATGCAAAACAGACGCGATACCACGATTGCAGACGTTGATAGAGTTTAt < 2:328038/143‑1 (MQ=255) ttCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACGCACCCAGCCTTTGCGGATCGGTAATGCAAAACAGACGCGATACCACGATTGCAGACGTTGATAGAGTTTAt < 1:338247/143‑1 (MQ=255) aTAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACGCACCCAGCCTTTGCGGATCGGTAATGCAAAACAGACGCGATACCACGATTGCAGACGTTGATAGAGTTTATGccc > 1:57085/1‑143 (MQ=255) | CGCACTGTGGTTGTTCAGATCGCGACGAATCGTCATCTCCGAAACCCCAAGCAGGGCGGCGGCGTCTTTAAGATGTAACTTATCGCTGCGTTTTAATTCTTGCAGCAGCTGCCCGATACGCTCTTCGCGACGTGTTTCCATAATCCCTCTGAATAGTTATTGAAGCGAGCCGCTCAATACTACACTTTTTAGCAGAGATCAGTCACGCACCCAGCCTTTGCGGATCGGTAATGCAAAACAGACGCGATACCACGATTGCAGACGTTGATAGAGTTTATGCCC > NC_000913/882594‑882875 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |