| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 1,020,166 | C→T | 14.4% | intergenic (‑113/+244) | ompA ← / ← sulA | outer membrane porin A/cell division inhibitor SulA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,020,166 | 0 | C | T | 14.4% | 52.6 / 4.0 | 28 | intergenic (‑113/+244) | ompA/sulA | outer membrane porin A/cell division inhibitor SulA |
| Reads supporting (aligned to +/- strand): ref base C (11/13); new base T (2/2); total (13/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.58e-01 | |||||||||||
TCGCGATAGCTGTCTTTTTCATTTTTTGCGCCTCGTTATCATCCAAAATACGCCATGAATATCTCCAACGAGATAACACGGTTAAATCCTTCACCGGGGGATCTGCTCAATATTAACTCTACCGATATCTTCGGCTTATGCCGAGCACCCCTGGCGATGTAAAGTCTACAACGTAGTTGAAAACTTACAAGTGTGAACTCCGTCAGGCATATGAAAAAAAAGTCTTGTATAAGGTATGTTTAATCTTTTTTGTCAGCGACAATTTACAGAAG > NC_000913/1020032‑1020303 | tCGCGATAGCTGTCTTTTTCATTTTTTGCGCCTCGTTATCATCCAAAATACGCCATGAATATCTCCAACGAGATAACACGGTTAAATCCTTCACGGGGCAATCTGCTGATTCATAACTCTACCGATATCTTCGGCTTATgggc > 2:140104/1‑140 (MQ=255) gTCTTTTTCATTTTTTGCGCCTCGTTATCATCCAAAATACGCCATGAATATCTCCAACGAGATAACACGGTTAAATCCTTCACCGGGGGATCTGCTCAATATTAACTCTACCGATATCTTCGGCTTATGCCGAGCACCCCTgg < 1:512367/143‑1 (MQ=255) ttttttGCGCCTCGTTATCATCCAAAATACGCCATGAATATCTCCAACGAGATAACACGGTTAAATCCTTCACCGGGGGATCTGCTCAATATTAACTCTACCGATATCTTCGGCTTCTGCCGAGCCCCCCTGGCGCTGTAAAg > 1:219446/1‑143 (MQ=255) tttgttGCGCCTCGTTCTCATACAAAAGACGCCATGAATAGCTCCAACGAGATAACACGGTTAAATCCTTCACCGGGCGATCTGCTCAAGATTAACTCTACCGATATCTTCGGCTTATGCCGAGCACCCCTGGCGATGTAAAg < 1:282054/143‑1 (MQ=255) tttttGCGCCTCGTTATCATCCAAAATACGCCATGAATATCTCCAACGAGATAACACGGTTAAATCCTTCACCGGGGGATCTGCTCAATATTAACTCTACCGATATCTTCGGCTTATGCCGAGCCCCCCTGGCGATGTAAAGt > 2:170782/1‑143 (MQ=255) tGCGCCTCGTTATCATCCAAAATACGCCATGAATATCTCCAACGAGATAACACGGTTAAATCCTTCACCGGGGGATCTGCTCAATATTAACTCTACCGATATCTTCGGCTTATGCCGAGCACCCCTGGCGATGTAAAGTCTAc < 1:168488/143‑1 (MQ=255) ctccTCGTTATCATCCAAAATACGCCATGAATATCTCCAACGAGATAACACGGTTAAATCCTTCACCGGGGGATCTGCTCAATATTAACTCTACCGATATCTTCGGCTTATGCCGAGCACCCCTGGCGATGTAAAGTCTACaa < 2:142343/141‑1 (MQ=255) ttATCATCCAAAATACGCCATGAATATCTCCAACGAGATAACACGGTTAAATCCTTCACCGGGGGATCTGCTCAATATTAACTCTACCGATATCTTCGGCTTATGCCGAGCACCCCTGGCGATGTAAAGTCTGCAACGTAGtt > 1:84370/1‑143 (MQ=255) cAACATACGCCATGTGTATCTCCATCGAGATAACACGGTTAAATCCGTCACCGGGGGATCTGCTCAATATTAACTCTACCGATATCTTCGGCTTATGCCGAGCACCCCTGGCGATGTAAAGTCTACAACGTAGTTGAAAACtt < 2:399218/143‑1 (MQ=255) cAAAATACGCCATGAATATCTCCAACGAGATAACACGGTTAAATCCTTCACCGGGGGATCTGCTCAATATTAACTCTACCGATATCTTCGGCTTATGCCGAGCACCCCTGGCGATGTAAAGTCTACAACGTCGTTGCAAACtt > 1:339605/1‑143 (MQ=255) aaTATCTCCAACGAGATAACACGGTTAAATCCTTCACCGGGGGATCTGCTCAATATTAACTCTACCGATATCTTCGGCTTATGCCGAGCACCCCTGGCGATGTAAAGTCTACAACGTAGTTGAAAACTTACAAGTGTGAACTc > 1:323807/1‑143 (MQ=255) ctcCTACGAGATAACACGGTTAAATCCTTCCCCGGGGGATCTGCTCAATATTAACTCTACCGATATCTTCGGCTTATGCCGAGCCCCCCTGGCGATGTAAAGTCTACAACGTAGTTGAAAACTTACAAGTGTGAACTCCGTCa < 2:532621/143‑1 (MQ=255) cAACGAGATAACACGGTTAAATCCTTCCCCGGGGGATCTGCTCAATATTAACTCTACCGATATCTTCGGCTTATGCCGAGCACCCCTGGCGATGTAAAGTCTACAACGTAGTTGAAAACTTACAAGTGTGAACTCCGTCAGGc < 1:153767/143‑1 (MQ=255) tgcGAGATAACACGTTCAAATCCTCCCCCGGGGGCTCTGCTCAATATTAACTCTACCGATATCTTCGGCTTATGCCGAGCACCCCTGGCGATGTAAAGTCTACAACGTAGTTGAAAACTTACAAGTGTGAACTCCGTCAGGCa < 2:86414/141‑1 (MQ=255) aaCGAGATAACACGGTTAAATCCTTCACCGGGGGATCTGCTCAATATTAACTCTACCGATATCTTCGGCTTATGCCGAGCACCCCTGGCGGTGTAACGTCTACAACGTAGTTGAACACTTACCAGTGTGAACTCCGTCAGGCa > 1:30210/1‑143 (MQ=255) aaCGAGATAACACGGTTAAATCCTTCACCGGGGGATCTGCTCAATATTAACTCTACCGATATCTTCGGCTTATGCCGAGCACCCCTGGCGATGTAAAGTCTACAACGTAGTTGAACACTTACAAGTGTGAACTCCGTCAGGCa > 2:506064/1‑143 (MQ=255) tAACACGGTTAAATCCTTCACCGGGGGATCTGCTCAATATTAACTCTACCGATATCTTCGGCTTATGCCGAGCACCCCTGGCGATGTAAAGTCTACAACGTAGTTGAAAACTTACAAGTGTGAACTCCGTCAGGCATATGaaa < 1:233295/143‑1 (MQ=255) cGGGGGATCTGCTCAATATTAACTCTACCGATATCTTCGGCTTATGCCGAGCACCCCTGGCGATGTAAAGTCTACAACGTAGTTGAAAACTTACAAGTGTGAACTCCGTCAGGCATATGAAAAAAAAGTCTTGTATAAGGTAt > 1:362346/1‑143 (MQ=255) aTCTGCTCAATATTAACTCTACCGATATCTTCGGCTTATGCCGAGCACCCCTGGCGATGTAAAGTCTACAACGTAGTTGAAAACTTACAAGTGTGAACTCCGTCAGGCATATGAAAAAAAAGTCTTGTATAAGGTATGTTTaa < 1:13766/143‑1 (MQ=255) gCTCAATATTAACTCTACCGATATCTTCGGCTTATGCCGAGCACCCCTGGCGATGTAAAGTCTACAACGTAGTTGAAAACTTACAAGTGTGAACTCCGTCAGGCATATGAAAAAAAAGTCTTGTATAAGGTATGTTTAATCtt < 1:170782/143‑1 (MQ=255) cTCAATATTAACTCTACCGATATCTTCGGCTTATGCCGAGCACCCCTGGCGATGTAAAGTCTACAACGTAGTTGAAAACTTACAAGTGTGAACTCCGTCAGGCATATGAAAAAAAAGTCTTGTATAAGGTATGTTTAATCttt > 1:549398/1‑143 (MQ=255) cagtAACTCTACGGATATCTGCGGCTTATGCCGAGCACCCCTGGCGATGTAAAGTCTACAACGTAGTTGAAAACTTACAAGTGTGAACTCCGTCAGGCATATGAAAAAAAAGTCTTGTATAAGGTATGTTTAATCTTTTTTGt < 2:391769/140‑1 (MQ=255) tctACCGATATCTTCGGTTTATGCCGAGCACCCCTGGCGATGTAAAGTCTACAACGTAGTTGAAAACTTACAAGTGTGAACTCCGTCAGGCATATGaaaaaaaa > 1:49591/1‑104 (MQ=255) tctACCGATATCTTCGGTTTATGCCGAGCACCCCTGGCGATGTAAAGTCTACAACGTAGTTGAAAACTTACAAGTGTGAACTCCGTCAGGCATATGaaaaaaaa > 1:319085/1‑104 (MQ=255) tctACCGATATCTTCGGTTTATGCCGAGCACCCCTGGCGATGTAAAGTCTACAACGTAGTTGAAAACTTACAAGTGTGAACTCCGTCAGGCATATGaaaaaaaa < 2:319085/104‑1 (MQ=255) tctACCGATATCTTCGGTTTATGCCGAGCACCCCTGGCGATGTAAAGTCTACAACGTAGTTGAAAACTTACAAGTGTGAACTCCGTCAGGCATATGaaaaaaaa < 2:49591/104‑1 (MQ=255) ttCGGCTTATGCCGAGCACCCCTGGCGATGTAAAGTCTACAACGTAGTTGAAAACTTACAAGTGTGCACTCCGTCAGGCATATGAAAAAAAAGTCTTGTATAAGGTATGTTTAATCTTTTTTGTCAGCGACCATTTACagaag > 1:213423/1‑143 (MQ=255) ttCGGCTTATGCCGAGCACCCCTGGCGATGTAAAGTCTACAACGTAGTTGAAAACTTACAAGTGTGAACTCCGTCAGGCATATGAAAAAAAAGTCTTGTATAAGGTATGTTTAATCTTTTTTGTCAGCGACAATTTACagaag < 2:323807/143‑1 (MQ=255) | TCGCGATAGCTGTCTTTTTCATTTTTTGCGCCTCGTTATCATCCAAAATACGCCATGAATATCTCCAACGAGATAACACGGTTAAATCCTTCACCGGGGGATCTGCTCAATATTAACTCTACCGATATCTTCGGCTTATGCCGAGCACCCCTGGCGATGTAAAGTCTACAACGTAGTTGAAAACTTACAAGTGTGAACTCCGTCAGGCATATGAAAAAAAAGTCTTGTATAAGGTATGTTTAATCTTTTTTGTCAGCGACAATTTACAGAAG > NC_000913/1020032‑1020303 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |