| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,368,101 | T→C | A21A (GCT→GCC) | arnA → | fused UDP‑4‑amino‑4‑deoxy‑L‑arabinose formyltransferase/UDP‑glucuronate dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,368,101 | 0 | T | C | 96.8% | 70.9 / NA | 31 | A21A (GCT→GCC) | arnA | fused UDP‑4‑amino‑4‑deoxy‑L‑arabinose formyltransferase/UDP‑glucuronate dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (12/18); minor base A (1/0); total (13/18) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.19e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 | |||||||||||
ACACCGATGTCCGCGCCCGCCCCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCTGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGTTTATGCGCCGGATAACGTTAATCATCCGCTGTGG > NC_000913/2367966‑2368239 | acacCGATGTCCGCGCCCGCCCCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCggct > 1:699820/1‑141 (MQ=255) cacCGATGTCCGCGCCCGCCCCCACTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGATAATCGTTGTTTCTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTa < 1:581423/143‑1 (MQ=255) acCGATGTCCGCGCCCGCCCCCGCTATTTTGTTCAGCACGTTATCCGTCCATCCAGCAAGGAAAATCAATAATGAAAACCGTCGGTCTTGCCTACCACGATACGGGATGCCTCCGCGGTGAAGCCCTGCTGGCCGcacgttcc > 1:1108736/1‑136 (MQ=255) acCGATGTCCGCGCCCGCCCCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGCAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGACGCCCTGCTGGCCGCCGGTGAc > 1:487500/1‑143 (MQ=255) ccGATGTCCGCGCCCGCCCCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACg < 1:661224/143‑1 (MQ=255) cccgcccCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGACCTGCTGGCCGCCGGCTAAGAACTAAgcgcaa > 2:579459/1‑141 (MQ=255) gcccCCGCTAGTGTGTGCGGCAAGTTATCCGTCTATCCAGCAATGAAAATGAATAATGAAAACCGTCGTTGTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCAttt < 2:627641/143‑1 (MQ=255) ccGCTATTTTGTTCAGCAATTTATCCGTCCATCCAGCAAGGAAAATGAATGATGAAAACCGTCGTTTTTGCCTACCACTATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTAc < 2:643959/143‑1 (MQ=255) tcatcaTGTGATCCGTCCATCCATCAAGCAAAATGAATAACGAACACCGTCGTCTTTGCCTACCGCGATATGGGATGCCGCGGTATTGAAGCCCGGCTGGCCGCCGCTTACGAAATTAGCGCCATTTTTACCAACACGGATaa < 2:193437/143‑1 (MQ=255) tCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTCCCGCATTAGCGCCCTTTTTACCCacaccgttca > 1:484278/1‑137 (MQ=255) aGCAAGTTATCCGTCCATCCAGCACGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATCGGAGGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCAATGTAACACCTACTGatcatc > 2:151895/1‑143 (MQ=255) aGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTGACGAAATTAGCGCCATTTTTACCCATACGGATAGTc > 2:1003112/1‑143 (MQ=255) aaGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTGCGAAATTAGCGCCATTTTTACCCATACAGATAATACCg > 1:1038071/1‑143 (MQ=255) aaGTGATCCGTCCAGCCAGCAAGGCAAATGAATCATGTCTACCGTCGTTTTTGCCTCCCACGATACGATCTCTCTTGATCTCCAGTCCTTTCTGTCCGCCGGTTACTCCCTTATCGTCATTTTTACCCATACTGATAATCCCg < 2:496140/143‑1 (MQ=255) gTTATCCGTCCATCAAGCAAGGAAAATAAATAATGAAATCCGTTGTTTTTGCCTACCACTATATGTTATGCTTCGGTATTGAAGCCCTGCTGGCCGCCGGTAACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGt < 1:223428/143‑1 (MQ=255) gTTAGCCGTCCATCCAGCAAGGAAAAGGAATAAAGAAATGCGGCTTTTGTGCCTACCACGATACGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGt < 2:490662/143‑1 (MQ=255) aTCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTATGAAATTAGCGCCATTTTTACTCATATTGATAATCTCGGTGaa > 1:994896/1‑143 (MQ=255) cGTTCATTCAGCAATAAAAATACATAATGAGAGTCGTTTTTTTTGCATATCACTATATGGGATGCTTCTGTATTAAATCCCTGATGTCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGaaaaa < 2:946237/143‑1 (MQ=255) tccatccaGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACACATACTGATAATCACGGTgccaaatc > 2:756127/1‑136 (MQ=255) tcAAGGAATATGAATTATGAATCCCGTCGTTTTTGAAGCCCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATg < 2:329774/142‑1 (MQ=255) agagggatattGACAGCCGTCGTTTTTGCCGACGACGGTCTGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGt < 2:1078879/137‑1 (MQ=255) gAAAACCGTCGTTTTTGCCTACCACGATCTGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCTCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTgg < 1:793934/143‑1 (MQ=255) ttttGCCTACCTCGATATGGGATGCCTCGGTCTTCAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAagag < 2:994896/143‑1 (MQ=255) ccTACCACTATATGGGCTGCCTCGGTATTGAAGCCCTGCTGGCCGCTGGTTACTTATTTATCTTTTTTTTTTTTTTTTTTGATAATCCCGGTGAAAAAGCCTATTAGGGTTCGGTGGCCCGTCTGGCGGCGGAAAGAGGCAtt < 1:127104/143‑1 (MQ=255) aCCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCAGCCGGTTACGACATTAGCGCCATTTTTCCCCATACTGATCATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCCCGTCTGGCGGCGGACAGAGGCATCCCg > 2:19607/1‑143 (MQ=255) ccACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGGTCGGTGGGTGGTCTCGCGGCGAAAAGAGGCATTACgg > 1:996195/1‑143 (MQ=255) cGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGTCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGttt < 1:1069465/143‑1 (MQ=255) tatGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTACGGGTTATg > 1:839044/1‑143 (MQ=255) ctGGGGTGCCTTGTTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTGCCCATACTGATAATCCGGGTGAAAAAGTCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGTTTATgc < 2:487500/142‑1 (MQ=255) cccTGCCGGCCGCCGGTTACGAATTTAGTGCCATTTTTTCCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCTGTTTATGCGCCGGATAACGTTAATCATCCg < 2:693631/143‑1 (MQ=255) ctgctgGCCTCGGGTGACGAAATTAGCGCCATTTTTACCCATACTGATGATCCCGGTGAAGAAGCCTTTGATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGTTTATGCGCCGGATAACGTTAATCATCCGCt < 2:751159/143‑1 (MQ=255) gctggccgCCGGTTAGGAAATTAGCGCCATTTTTTCCCTTACTGATAATCCCGGTGAAAAAGCCTTTTATTGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGTTTATGCGCCGGATAACGTTAATCATCCGCtgt < 1:776028/143‑1 (MQ=255) gctggccgCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGTTCGTCTGGAGGTGGGGAGGGGCCTGTGGGTTTATGCGCCGGATAACGTTAATCATCCGCtgt < 1:1066002/143‑1 (MQ=255) tggccgCCGGTTACGAACTTAGCTCCATTTTTACCCATCCTGATAATCCCGGTTAAATTGCCTTTTATTGTTCGGTGGTTTGTCTGGCGGAGGAAAGAGGCATTCCGGTTTATGCGCCGGATAACGTTAATCATCCGCTgtgg < 1:402832/143‑1 (MQ=255) | ACACCGATGTCCGCGCCCGCCCCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCTGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGTTTATGCGCCGGATAACGTTAATCATCCGCTGTGG > NC_000913/2367966‑2368239 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |