New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	566777 =	NA (NA)	1027 (37.840)	232/262	NT	97.4%	noncoding (1/1258 nt)	IS3	repeat region
	?	NC_000913	= 572471	28 (1.020)					coding (6/456 nt)	ybcN	DLP12 prophage; DNA base‑flipping protein

TCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAG  >  NC_000913/566641‑566903                                                                                                                                         |                                                                                                                               tCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCtt                                                                                                                          >  2:34278/1‑143 (MQ=255)          ttAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGAAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGGGCAACCGGAATCTGATATTAccggccca                                                                                                                 >  2:247009/1‑137 (MQ=255)             aaGCTAAGTCCGTACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATGATGCATCACCTGGGGACGCATAAGAGCTTCTGTGCCCAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCGGATCTTACCCAGCAATAg                                                                                                              <  1:489356/143‑1 (MQ=255)                       ccgACTGAACGGAGCAACTGTACGCCCGGCACAGATGCACTTATTCATTACCGGGGGACGCATAAGAGCTTCTCTCCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACAcgcg                                                                                                    <  1:194527/141‑1 (MQ=37)                        ggACTGAAAGGAGCAAGTGAATGACGGGCAAAGAGGCAATTATTCATTACCCGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGAGCAACCGTAATCTGATCTTACACAGCAATAGTGAACAcgcgc                                                                                                   >  2:326941/1‑142 (MQ=255)                            tGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTaa                                                                                               >  1:263566/1‑143 (MQ=255)                            tGAAAGGAGCAAGTGTATGACGGGAAAAGAGGCAATTATACATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTaa                                                                                               <  1:364076/143‑1 (MQ=255)                            tGAAAGAGGCAAGTGAAGGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTaa                                                                                               <  1:177673/143‑1 (MQ=255)                                 ggAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTCTTCTGATCTTACCCAGCAATCGTGGACACGCGGCTAAGTGAg                                                                                          >  1:144958/1‑143 (MQ=255)                                           tATGACGGTCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtca                                                                                <  2:220140/143‑1 (MQ=255)                                           tATGACGGGCAAAGAGGCCATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCtca                                                                                <  2:418681/143‑1 (MQ=255)                                                  ggCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCATAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCagag                                                                         <  1:441945/143‑1 (MQ=255)                                                     aaaGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTg                                                                      >  1:405231/1‑143 (MQ=255)                                                             aaTTTTTCATTACCTGGGTACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAt                                                              <  1:9158/143‑1 (MQ=255)                                                              atgattCATTAGCTGGGGATGTATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTCACCTCTGACTGAGAGTTTACTcactta                                                             <  2:164790/140‑4 (MQ=25)                                                                      atagcgggggAGGCAAAAGAGGTTCGGTGCACAGAACGTGGCCGCGGTAACAGGCGCAACAGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGATAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAAc                                                     <  1:390214/137‑1 (MQ=18)                                                                         ccTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCGCAGACAGAGGTGACGCGCATGGCAACAACAgc                                                  >  2:14696/1‑142 (MQ=25)                                                                         ccTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAAGCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGt                                                  <  2:322459/143‑1 (MQ=255)                                                                          cTGGGGGCGCGTAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTa                                                 <  2:178465/143‑1 (MQ=255)                                                                                                        gACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGCGACTCACATGACAAAAACAGTCTCAACCAGTAAAAAACCCCGTAAACAGCAt                   >  2:364773/1‑143 (MQ=255)                                                                                                        gACGTTGCCGCGGCAACAGGCGCACCCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCAt                   <  1:174636/143‑1 (MQ=255)                                                                                                               ccGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACCGTATCAACCAGTAACACACCCCGTGCACCGCCTTCGCCtc            >  1:326745/1‑142 (MQ=14)                                                                                                                         aGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCAGAAATTAGCAg  >  2:359034/1‑143 (MQ=255)                                                                                                                                         |                                                                                                                               TCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAG  >  NC_000913/566641‑566903

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.