| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1202235 | 26 (0.950) | 3 (0.120) | 3/250 | NT | 10.6% | intergenic (‑151/+24) | ymfJ/ymfK | e14 prophage; protein YmfJ/e14 prophage; putative repressor protein YmfK |
| ? | NC_000913 | = 1202239 | 26 (1.000) | intergenic (‑155/+20) | ymfJ/ymfK | e14 prophage; protein YmfJ/e14 prophage; putative repressor protein YmfK | |||||
CTGAAATCATCCGCTAACGAATCATCCCGGTCTTCGTACGTACCGGGCGGGCTACTTCGTGGGCGTCCTGCCTGTTTGTTGTTTCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCAGGCCAGTTTGGGTTTAACGCTTTGAGAT > NC_000913/1202097‑1202377 | cTGAAATCGTCCGCTAACGAATCATCCCGGTCTTCGTACGTACCGGGCGGGCTACTTCGTGGGCGTCCTGCCTGTTTGTTGTTTCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGaa < 2:127142/143‑1 (MQ=255) tGAAATCATCCGCTAACGAATCATCCCGGTCTTCGTACGTACCGGGCGGGCTACTTCGTGGGCGTCCTGCCTGTTTGTTGTTTCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAg < 1:276819‑M2/143‑2 (MQ=255) taatccgCTAACGAATCATCCCGGTCTTCGTACGTACCGGGCGGGCTACTTCGTGGGCGTCCTGCCTGTTTGTTGTTTCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAgcaggt > 2:67898‑M2/3‑137 (MQ=255) ccGCTAACGAATCATCCCGGTCTTCGTACGTACCGGGCGGGCTACTTCGTGGGCGTCCTGCCTGTTTGTTGTTTCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCttcggcaggttttt < 2:242894‑M1/143‑15 (MQ=255) cGCTAACGAATCATCCCGGTCTTCGTACGTACCGGGCGGGCTACTTCGTGGGCGTCCTGCCTGTTTGATGTTTCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAACCCTGCACAAgcaggtgccta < 2:326056‑M2/143‑12 (MQ=255) cTAACGAATCATCCCGGTCTTCGTACGTACCGGGCGGGCTACTTCGTGGGCGTCCTGCCTGTTTGTTGTTTCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTTAAGTTTAAAAACACCTGCCAAAGCCGGTTCATaac > 1:54785/1‑142 (MQ=255) tAACGCATCATCCCGGTCTTCGTACGTACCGGGCGGGCTACTTCGTTGGCGTCCTGCCTGTTTGTTGTTTCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAAc < 1:171936/143‑1 (MQ=255) aaTCATCCCGGTCTTCGTACGTACCGGGCGGGCTGATTCGTGGGCGTTCTTCCTGTTTGTTGGTGCTCTTGGGTACGTAATGTATCTCGGAGGTAGATTGTCTAGTATAAAAAAACCTGCCGAAGCAGCTTCATAAACATTGa > 2:178747/1‑143 (MQ=255) tCTTCGTACGTACCGGGCGGGCTACTTCGTGGGCGTCCTGACTGTTTGTTGTTGCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGa < 2:258187/143‑1 (MQ=255) ccTTCGTACGTACCGGGCGGGCTACTTCGTGGGCGTCCTGCCTGTTTGTTGTTTCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGa < 1:481597/142‑1 (MQ=255) cgtacgtaCCGGGCGGGCTACTTCGTGGGCGTCCTGCCTGTTTGTTGTTTCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGAtttt > 1:488670/1‑143 (MQ=255) gtacgtacCGGGCGGGCTACTTCGTGGGCGTCCTGCCTGTTTGTTGTTTCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTg < 1:483811/143‑1 (MQ=255) tacgtacCGGGCGGGCTACTTCGTGGGCGTCCTGCCTGTTTGTTGTTTCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCttcggcaggtttttttatacttgacaatgtacctttgaga > 1:167924‑M1/1‑103 (MQ=255) ggcTACTTCGTGGGCGTCCTGCCTGTTTGTTGTTTCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTATTGGttt > 2:26739/1‑143 (MQ=255) cTACTTCGTGGGCGTCCTGCCTGTTTGTTGTTTCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTGTTGGTTTTc > 1:465956/1‑143 (MQ=255) tACTTCGTGGGCGGCCTGCCTGTTTGTTGTTTCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTcc < 1:5118/143‑1 (MQ=255) aCTGCGTGCGCGTCCTGCCTGTTTGTTGTTTCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCt < 1:434445/143‑1 (MQ=255) tGGGCGTCCTGCCTGTTTGTTGTTTCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATCAATTAGCCTTTCATTATGTTTCTTCTTGGTTTTCCTGAGaaa > 1:334640/1‑143 (MQ=255) ggCGTCCTGCCTGTTTGTTGTTTCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCttcggcaggtttttttatacttgacaatgtacctttgagatacataatgtacccaagagaaacaa < 2:167924‑M1/143‑66 (MQ=255) tgttgtTTCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATtat > 2:370022/1‑143 (MQ=255) gttgttTCTCTTTGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATtata < 2:17450/143‑1 (MQ=255) ttgttTCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAgcaggtttttttatacttgacaatgtacctttgagatacataatgtacccaagagaaacaacaaacaggcaggacgcc < 2:167924‑M2/143‑79 (MQ=255) ttgttTCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATag > 2:376865/1‑143 (MQ=255) ttgttTCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATag > 1:523851/1‑143 (MQ=255) tgttTCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATaga < 1:189462/143‑1 (MQ=255) ttCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAATCTTCCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTACATACTATATTTTCTTGAGAAAATTACAGTACCAATCATAGAGCa > 2:86844/1‑143 (MQ=255) ttCTCGTGGGTACATTATGTATCTCACAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCAGAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAGATCACAGTACCAGTTATAGAGcg > 2:101872/1‑142 (MQ=255) tctTGGGTACATTATGTATCTCAAAGATACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTAATTTTGTATCTTCTTGGCTTTCCTGAGAAAATGACCGTAGCGATTATAGAGCAAtt > 2:3649/1‑143 (MQ=255) tACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTg > 1:90521/1‑143 (MQ=255) aTGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCATAAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTa > 2:72766/1‑143 (MQ=255) tGTATCTCAAAGGTACATTCTCACGTATAAAAAACCCTGCCGAAGCAGGTGCATAACAATTGCTTAGGCTCTGATTTTCTACCCTCTTGGCTTTCATGAGACAACCACAGTACCAATCCTCAAGCAATCACCGTTGagcctac > 2:398923/1‑137 (MQ=255) tctcAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAgcaggtttttttatacttgacaatgtacctttgagatacataatgtacccaagagaaacaacaaacaggcaggacgcccacgaagtagcccgcccggtacgta > 1:167924‑M2/1‑40 (MQ=255) cAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAgg < 1:224897/143‑1 (MQ=255) gTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCAg < 2:481138/143‑1 (MQ=255) ttGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCAGGCCAg < 2:71552/143‑1 (MQ=255) taggcacctgcttgtgcagggttttttatacttgacaatgtacctttgagatacataatgtacccaagagaaacatcaaacaggcaggacgcccacgaagtagcccgcccggtacgtacgaagaccgggatgattcgttagcg < 2:326056‑M1/138‑133 (MQ=255) aaaaaCCTGCCGAAgcaggtttttttatacttgacaatgtacctttgagatacataatgtacccaagagaaacaacaaacaggcaggacgcccacgaagtagcccgcccggtacgtacgaagaccgggatgattcgttagcgg < 2:242894‑M2/143‑130 (MQ=255) aCCTGCttcggcaggtttttttatacttgacaatgtacctttgagatacataatgtacccaagagaaacaacaaacaggcaggacgcccacgaagtagcccgcccggtacgtacgaagaccgggatgattcgttagcggatta > 2:67898‑M1/1‑6 (MQ=255) gCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTTGTTTTCCTTAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCAGGCCAGTTTGGGTTTAACGCTTTgaga < 1:408132/143‑1 (MQ=255) cttcggcaggtttttttatacttgacaatgtacctttgagatacataatgtacccaagagaaacaacaaacaggcaggacgcccacgaagtagcccgcccggtacgtacgaagaccgggatgattcgttagcggatgatttca < 1:276819‑M1/143‑143 (MQ=255) ccGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCAGGCCAGTTTGGGTTTAACGCTTTTAGAt < 2:92702/143‑1 (MQ=255) | CTGAAATCATCCGCTAACGAATCATCCCGGTCTTCGTACGTACCGGGCGGGCTACTTCGTGGGCGTCCTGCCTGTTTGTTGTTTCTCTTGGGTACATTATGTATCTCAAAGGTACATTGTCAAGTATAAAAAAACCTGCCGAAGCAGGTTCATAAACATTGATTAGGCTTTGATTTTGTATCTTCTTGGTTTTCCTGAGAAAATCACAGTACCAATTATAGAGCAATTACCGTTGATCTTAATGTAAGGCTCAGGCCAGTTTGGGTTTAACGCTTTGAGAT > NC_000913/1202097‑1202377 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |