| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 1,985,112 | C→G | 17.4% | intergenic (‑43/+27) | araG ← / ← araF | arabinose ABC transporter ATP binding subunit/arabinose ABC transporter periplasmic binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,985,112 | 0 | C | G | 17.4% | 77.1 / 6.4 | 32 | intergenic (‑43/+27) | araG/araF | arabinose ABC transporter ATP binding subunit/arabinose ABC transporter periplasmic binding protein |
| Reads supporting (aligned to +/- strand): ref base C (10/16); new base G (2/4); total (12/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GCAGTCAAAACTAATATCCGTCAGCGCCTTAACGCCGGGAAACGTTTTACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACGTCGGTAACTTCGGTAAATTTTGGCGGTTCAACGTCTTTTGCT > NC_000913/1984980‑1985247 | gCAGTTAAATCTAATGTCCGTCGGCGCCTTAACGCCGGGAAACGTTTTACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGAggg < 2:374485/143‑1 (MQ=255)gCAGTCAAAACTACTCTCCGTCAGCGCCTTAACGCCGGGAAACGTGTTACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATGATGCAGAggg < 2:175110/143‑1 (MQ=255)gCACTCAAAACTACTACCCGTCGCCGCCTCAACGCCGGGAACCGTTTTAGCGGTGCCGTGAAATGAGGGATACGGGGTAGACAGTCGCAGAACGTCTCAGTGAATCACTGATCGTTCACACCCCCTCTGCATGATGCAGAggg < 2:217001/143‑1 (MQ=255) aaCTAATATCCGTCAGCGCCTTAACGCCGGGAAACGTTTTACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGAGGGGAAttttt < 2:362054/143‑1 (MQ=255) actactATCCGTCAGCGCCTTAAAGCCTGGAAACGTTTTACCGATGCCGCGAAATGAGAGATACGGGGTAGTCTGTTGCATAACGTTTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTc < 1:352892/143‑1 (MQ=255) tAATATCCGTCAGCGCCTTAACGCCGGGAAACGTTTTACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTCCACCACTGGTCTTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCg < 1:511739/143‑1 (MQ=255) agcGCCGGGAATCGTTTTACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTa < 2:19266/141‑1 (MQ=255) ttACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAg < 1:104735/143‑1 (MQ=255) ttACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAg < 1:305971/143‑1 (MQ=255) gCCGCGAAATGAGAGATACGGGATAGAATCATCCAATGCTTTTGGGTTGTTCACTGGTCGTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTcttctt > 1:512369/1‑143 (MQ=255) cgctgaaTGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCcttc > 2:219648/6‑142 (MQ=255) cgAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTaaa < 1:22024/143‑1 (MQ=255) tGAGAGATACGGGGTAGTCTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGCGGGGAATTTTTCCGGCACATTACTTACCGCCTAAACCTTTTTTCTCCAGTCCTTCTTTAAAGTTGt > 2:328255/1‑143 (MQ=255) gagagaTACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAAGCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTc > 2:393936/1‑143 (MQ=255) tAGACTGTTGCCTAACGTCGCCGTGAATCACTGTTCGTTCACACCCCCTCTGCATCATGCAGAGCGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGt < 2:432983/143‑1 (MQ=255) gACTGCTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTAc < 1:342393/143‑1 (MQ=255) aaCGTCGCCGGGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTGTCTCCAGTTCTTCTTGAAAGTTGTCACGCGTGATCAGTACCACGTCGGTaa < 1:87469/143‑1 (MQ=255) ctcCGTGTATCACTGGTCGTTCCCCCCCCCTGTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACGTACCGCCTAAACCTTTTTGCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACGTCGGTAACTTCg < 2:283148/143‑1 (MQ=255) gAATCACTGGTTGTTCACACCCCCTCCGCATGATGCAGAGGTGATTTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACGTCGGTAACTTCGGTAAAt < 1:271809/143‑1 (MQ=255) aTCACTGGTCGTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACGTCGGTAACTTCGGTAAAttt < 1:53916/143‑1 (MQ=255) tCACGGTTCGTTCACGCCCCCTCCGCATCATGCAGGGGGGAAGTTTTCCGGCCAATTACTTCCCGCCTAACCCTTTTTTCTCCAGTCCTTCTTTACAGGTGTCACGCGTGATCAGTACCACGTCGGTAACTTCGGTAAAtttt < 2:417307/143‑1 (MQ=255) aCTTGTCGTTCACACACTCTCTGCATGATGCGGGGGTGAAGTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACGTCGGTAACTTCGGTAAATTTTgg < 2:235982/143‑1 (MQ=255) gTCGTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACGTCGGTAACTTCGGTAAATTTTGGCGGt > 1:519746/1‑143 (MQ=255) tCGTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCAAGTTCTTCTTTAAAGTTGTCACGCGTGCTCAGTACCACGTCGGTAACTTCGGTAAATTGTGGCgggt > 1:192040/1‑141 (MQ=255) gTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCTGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACGTCGGTAACTTCGGTACATTTTGTCGCTTCa > 2:331500/1‑143 (MQ=255) gTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCATAAACCCTTTTTCTGCAGTTCTTCTTTAAAGTTGTCACGCGTTATCAGTACCACCTCAGTAAATTCGTTAAATTTTAGCgcgtca > 2:507416/1‑138 (MQ=255) ttCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACGTCGGTAACTACGGTAACTTTTGGCGGTTCaa > 2:117662/1‑143 (MQ=255) tCACACCCCCGCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACGTCGGTAACTTCGGTAAATTTTGGCGGTTCAAc < 1:484996/143‑1 (MQ=255) cacCCCCTCTGCATCACGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAACCCTTTTTTCTCCAGTTCTTCTTTATAGTTGTCACGCGTGAGCAGTACCGCGTCGGTAACTTCGGTAAATTTTGGCGGTTCAACGTc < 2:216291/143‑1 (MQ=255) ttccccTCTGCATGATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACGTCGGTAACTGCGGTAAATTTTGGCGGTTCAACGGCt > 2:477793/3‑143 (MQ=255) cccTCTGCATGATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACGTCGGTAACTTCGGTAACATTTGGCGGTTCAACGTCtttt > 2:218529/1‑143 (MQ=255) tctGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACGTCGGGCACTTCGGTGAATTTTGGCGGTTGCACGTCTTTTGCt > 1:237146/1‑143 (MQ=255) | GCAGTCAAAACTAATATCCGTCAGCGCCTTAACGCCGGGAAACGTTTTACCGATGCCGCGAAATGAGAGATACGGGGTAGACTGTTGCATAACGTCTCCGTGAATCACTGGTCGTTCACACCCCCTCTGCATCATGCAGAGGGGAATTTTTCCGGCAAATTACTTACCGCCTAAACCTTTTTTCTCCAGTTCTTCTTTAAAGTTGTCACGCGTGATCAGTACCACGTCGGTAACTTCGGTAAATTTTGGCGGTTCAACGTCTTTTGCT > NC_000913/1984980‑1985247 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |