| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,368,101 | T→C | A21A (GCT→GCC) | arnA → | fused UDP‑4‑amino‑4‑deoxy‑L‑arabinose formyltransferase/UDP‑glucuronate dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,368,101 | 0 | T | C | 97.4% | 90.5 / NA | 39 | A21A (GCT→GCC) | arnA | fused UDP‑4‑amino‑4‑deoxy‑L‑arabinose formyltransferase/UDP‑glucuronate dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (21/17); minor base A (1/0); total (22/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
TACACCGATGTCCGCGCCCGCCCCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCTGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGTTTATGCGCCGGATAACGTTAATCATCCGCTGTGG > NC_000913/2367965‑2368239 | tACACCGATGTCCGCGCCCGCCCCCGCTATTTTGTTAAGCAAGATATCCGTCCATCCAGCAAGGAGAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGACACGGAAATGAAGCCCCGCTAGCCGCCgga > 2:463667/1‑142 (MQ=255) acacCGGTGTCCGCGCCCAGCACCGTTCTTGTTGGCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGGCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGtt < 2:1132472/143‑1 (MQ=255) acacCGATGTCCGCGCCCGCCCCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGtt > 2:197759/1‑143 (MQ=255) acacCGATGTCCGCGCCCAGGGCCGGTATTTAGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAAAGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGtt > 2:884233/1‑143 (MQ=255) cacCGATGTCCGCGCCCGCCCCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGCTATTGAAGCCCAGCTCgccgcccgccc > 1:552467/1‑138 (MQ=255) acCGATGTCCGCGCCCGCCCCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTAc > 1:43089/1‑143 (MQ=255) tCCGCGTCCGTCCCACTTATTGTTTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTa < 2:298384/143‑1 (MQ=255) gggcccgcccCGTCTATTTTGTTCAGCAATTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAgcg < 2:71863/141‑1 (MQ=255) gcccgcccCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGcc < 2:955131/143‑1 (MQ=255) ccgcccCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGGTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGATACGAAATTAACGCCAt > 2:583765/1‑143 (MQ=255) ccgcccCCGCTATTTTGTTCAGCAAGTTATCAGTCCATGCAGCAAGGAAACTGAATCAGGAAAACCGACGTTTTTGACTACCACGATATGGGATGCCTAGATAGTGCAGACATGGTGGCCGCAGGTTACGAAATCAgcacaac > 2:662575/1‑138 (MQ=255) cccGCTATTTTGTTCACCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGTTTCGGTATTGAAGTCCTGCGGGCCGCCGGTTACGAAATTAACGCCATTTTTa < 1:487869/143‑1 (MQ=255) tttCTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACt < 2:399822/143‑1 (MQ=255) tCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGGGCGATTTTTACCCTTACTGATac > 2:129324/1‑142 (MQ=255) aGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTAAAGCCCTGATGGCAGCCGCTAACGAAATAAGCGAGCTTTTGACCCAGACACATaacc > 2:1195422/1‑141 (MQ=255) cGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGaaaaa > 2:469683/1‑143 (MQ=255) cGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGaaaaa < 1:197759/143‑1 (MQ=255) tccatccaGCACGGAAAATGAATAATGCAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCTATACTGATAATCCCGGTGAAAAAGc < 2:283336/143‑1 (MQ=255) accgaGCAAGGAATATGAAGAATTAAAACCGTCGTCTTTGCGTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCtt < 2:753633/139‑1 (MQ=255) aaGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGt < 2:43089/143‑1 (MQ=255) aaTGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGTATTTAGCGCCATTTTTACCAATACTGATAATACCGGTGAAAAAGAATTTTATGGTTGGGTg > 1:348795/1‑143 (MQ=255) aTGAATAATGAAATCCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTCTTGACGCCCTGCTGGCCGCCGGTTACGTTTTTTGCTCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTgg < 1:967999/143‑1 (MQ=255) aataatGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGACCTTCGCGTGTTCTACGCCCATAATGATAATCCCGGTTAAACAACCTTTAATGGTTCGGTGACTc > 1:280043/1‑143 (MQ=255) aataatGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTCGCGCCATTTTTACCCATACTGATAATCCCGGTGCAAAAGCCTTTTATGGTTCAGTGACTc > 1:789207/1‑143 (MQ=255) aatGAAAACCGTCGTGTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATACCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTc < 1:802952/143‑1 (MQ=255) tGAAAACCGTCGTTTTTGCCTACCACGATATGAGATGCCACATTACTGAAGCCCTGCTGACCACCGGTTACGACATTAGCGCCATTTTCACCCATACTGATCATCCCTATGAAAGAGCCTCTTCTGTCTCTGTGGCTCGTCTg > 2:87786/1‑143 (MQ=255) gAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGACGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTgg < 2:1126511/143‑1 (MQ=255) aaaaCCGTCGTTGTTGCCTACCACGATATGGGATGCCTCTGTATTGAAGCCCTGCTGGTCGCCGGTTACGAAATTAGTGCCATTTTTACCCATACGGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTggc < 1:756249/143‑1 (MQ=255) aaCCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTggcgg > 1:278373/1‑143 (MQ=255) aaCCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCAGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTggcgg < 1:1037479/143‑1 (MQ=255) cgtcgtTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGTTTATCCCGGTGCTTACGCCTTTTATGTTTCGGTTGCTCATCTGGcagcgg > 1:166066/1‑143 (MQ=255) ccccGATATGGGATGCGTCGGTATCGAAGCGCTGCTGGCCGCCGGTTACGACATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCgg < 2:1235268/140‑1 (MQ=255) ccACGATATGGGATGCCTCGGTATTGAAGCACTGCGGGCCGCCGGCCACGAAATTAGCGCCATTTTTACCCAGACTGAAAAGCCCGGTGAAAAAGCCACTCAAGCATCGGTGCCCCGACAGGCCGCGGAAACAAGCAATccta > 2:939026/1‑141 (MQ=255) gATATGGGATGCCGCGGTATTCAAGCCCTGCTGGCCGTCGGTTACTAAATTAGCGCCCTTTTTTCCCATACTGGTTCTCCCGGTGAAAAAGTCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATACCGGTTTa < 2:213704/143‑1 (MQ=255) tGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGGCTGGCGGCGGAAAGAGGCAGGCCGGTTGATgcg > 1:10343/1‑143 (MQ=255) aTTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGAATTGCGTTTTATGCCCCGGATCACGTTac > 1:897017/1‑142 (MQ=255) gCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCCTTCCGGTTTATGCGCCGGCTAACGTTAATCATcc > 2:942404/1‑143 (MQ=255) cccTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGTTTATGCGCCGGATAACGTTAATCATGCg > 2:540859/1‑143 (MQ=255) ccTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGTTTATGCGCCGGATAACGTTAATCATCCGc > 2:169929/1‑143 (MQ=255) tgctgGCCGCCGGTTACGAAATTAGCGCCATTTTTAGCCATACTGATAATCACGGTGGAAAGGCCTTTTATGAGTCGGTGGCTCGTCTGGCGGCAGAAGGAGGGAACCCGGGTGAGGCGCCGGACAACGATAAACATCAGccg > 2:1145145/1‑141 (MQ=255) tggccgCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGTTTATGAGCCGGCTAACGTTAATCATCCGCTgtgg > 2:1048199/1‑143 (MQ=255) | TACACCGATGTCCGCGCCCGCCCCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCTGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGTTTATGCGCCGGATAACGTTAATCATCCGCTGTGG > NC_000913/2367965‑2368239 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |