mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 25.7% | 73.1 / 38.2 | 70 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Marginal new junction evidence (lowest skew 10 of 103 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 570695 = | 3384 (50.220) | 40 (0.620) | 22/268 | 2.6 | 1.3% | intergenic (+267/‑198) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL |
| ? | NC_000913 | 570719 = | 3024 (47.240) | intergenic (+291/‑174) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL | |||||
| * | ? | NC_000913 | = 568684 | 3496 (51.880) | 26 (0.410) | 17/268 | 3.7 | 0.78% | intergenic (+37/‑11) | emrE/ylcJ | multidrug/betaine/choline efflux transporter EmrE/protein YlcJ |
| ? | NC_000913 | = 568696 | 3323 (51.910) | coding (2/150 nt) | ylcJ | protein YlcJ | |||||
| * | ? | NC_000913 | = 570701 | 3211 (47.650) | 28 (0.440) | 16/268 | 4.0 | 0.91% | intergenic (+273/‑192) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL |
| ? | NC_000913 | = 570711 | 3024 (47.240) | intergenic (+283/‑182) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL | |||||
| * | ? | NC_000913 | 568265 = | 2816 (41.790) | 21 (0.340) | 14/262 | 4.4 | 0.79% | intergenic (+18/‑50) | renD/emrE | DLP12 prophage; protein RenD/multidrug/betaine/choline efflux transporter EmrE |
| ? | NC_000913 | 568300 = | 2675 (42.750) | intergenic (+53/‑15) | renD/emrE | DLP12 prophage; protein RenD/multidrug/betaine/choline efflux transporter EmrE | |||||
| * | ? | NC_000913 | = 315852 | NA (NA) | 30 (0.460) | 13/274 | 5.0 | NA | noncoding (624/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 315875 | NA (NA) | noncoding (647/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 1207805 | 66 (0.980) | 11 (0.180) | 10/250 | 5.5 | 17.8% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 43 (0.720) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 315572 | NA (NA) | 15 (0.240) | 9/262 | 6.2 | NA | noncoding (344/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 315588 | NA (NA) | noncoding (360/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 572411 | 1285 (19.070) | 12 (0.190) | 9/268 | 6.3 | 1.2% | coding (44/102 nt) | ylcH | DLP12 prophage; uncharacterized protein YlcH |
| ? | NC_000913 | = 572431 | 726 (11.340) | coding (64/102 nt) | ylcH | DLP12 prophage; uncharacterized protein YlcH | |||||
| * | ? | NC_000913 | = 568908 | 3497 (51.890) | 10 (0.160) | 9/268 | 6.3 | 0.30% | coding (7/1527 nt) | ybcK | DLP12 prophage; putative recombinase |
| ? | NC_000913 | = 568928 | 3329 (52.000) | coding (27/1527 nt) | ybcK | DLP12 prophage; putative recombinase | |||||
| * | ? | NC_000913 | 1207790 = | 70 (1.040) | 8 (0.130) | 7/250 | 6.8 | 13.1% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 44 (0.740) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||