Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 1,440,791 | C→T | 40.9% | intergenic (‑7/‑267) | ydbK ← / → ydbJ | putative pyruvate‑flavodoxin oxidoreductase/DUF333 domain‑containing protein YdbJ |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 1,440,791 | 0 | C | T | 40.9% | 18.1 / 35.0 | 43 | intergenic (‑7/‑267) | ydbK/ydbJ | putative pyruvate‑flavodoxin oxidoreductase/DUF333 domain‑containing protein YdbJ |
Reads supporting (aligned to +/- strand): ref base C (14/10); new base T (9/8); total (25/18) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 7.60e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GCCGTTTCCGGCCCAGGCATCAGCCTGTTCTGCCATCGTGGAACTGGGGGTAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACACCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATCAGCGTAATGAATGTTTTGATCAAACAGA > NC_000913/1440656‑1440930 | gCCGTTTCCGGCCCAGGCATCAGCCTGTTCTGCCATCGTGGAACTGGGGGTAATAGGGTAGATGACGTTAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATACTTACa > 1:344522/1‑143 (MQ=255) ccGTTTCCGGCCCAGGCATCAGCCTGTTCTGCCATCGTGGAACTGGGGGTAATAGGGTAGATGGAGATAACTTCACTGGTGCGAAATGCGACCGGAGCAAAGAGGCCATTCCCATCAATGATAAGCCTGTGACAACCCTACag > 2:545469/1‑142 (MQ=255) ttCCGGCTCAGGCATCAGCCTGTTCTGCCATCGTGGAACTGGGGGGAATAGGGTGGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCTTCAATAGTAATCATATGACACCCTTACATTgcg < 2:215347/143‑1 (MQ=255) gCCCAGGCATCAGCCTGTTCTGCCATCGTGGAACTGGGGGTAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACACCCTTACATTGCGCAAAt > 1:190307/1‑143 (MQ=255) taTCAGCCTGTTCTGCCATCGTGGAACTGAGGGTATTTTGTTTTGTGGTGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGgc < 2:112153/142‑1 (MQ=255) aGCCTGTTCTGCCATCGTGGAACTGGGGGTAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACACCCTTACATTGCGCAAATGAGGGGCGCAc > 2:149687/1‑143 (MQ=255) tCTGCCATCGTGGGTCTGGGGGTAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAATCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATtg < 2:442362/143‑1 (MQ=255) tGCCATCGTGGAACTGGGGGTAATAGGGTAGATGGCGATAACCTCATTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATTATATCCTTACATTGCGCAAATGAGGGGCGCACGAAATtgct < 1:134505/143‑1 (MQ=255) aTCGTGGAAGTGGGTGTAATAGGGTAGATGTCGATAACTTCACTGGTGCGAAATGCCACCGAAGCAACCGCGCCATTACCGTCAATAGGAATCATATGACACCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTgcgc < 2:350469/143‑1 (MQ=255) tCGTGGAACTGGGGGTAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTgcgcg > 1:84515/1‑143 (MQ=255) aaCTGGGGGTAATAGGGTAGTTGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACACCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCagt > 1:94825/1‑143 (MQ=255) aaCTGGGGGTAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCACATGAGGGGCGCACGAAATTGCTGCGCGCCCagt > 2:228673/1‑143 (MQ=255) ggggTAAGAGGGTAGATGGCGATAACTGCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACACCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTaa < 2:78771/143‑1 (MQ=255) tAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCGTTACCGTCAATAATAATCATATGACATCCTTACATTGCGCAAATGAGGGGGGCACGAAACTGCTGCCGGCCCCGGAGCAATCtt > 2:542743/1‑143 (MQ=255) tAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACACCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCtt < 1:59050/143‑1 (MQ=255) tAAGAGGGTAGCGGGCGATAACGTCACGGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATGGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCtt < 1:357760/143‑1 (MQ=255) tAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACACCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAAtttt > 2:547108/1‑143 (MQ=255) tGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTGAGCa > 1:410962/1‑143 (MQ=255) cGATAACTTCACTGGTGCGAACTGCGCCCGAAGCAACCGCGCCCTAACCGTGAATAGTCAGTATTTGATACCCTTACATTGCGCAAACGAGGGGCGCACGAACTTGCTGCTCGCCCAGTAGTAGTCGTTCAATTTTAGCaagt > 1:177494/1‑141 (MQ=255) cACTGGTGCGAAATGCGACCGAAGCCACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTttctt < 2:304887/143‑1 (MQ=255) cACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAAGAGTAATCATAGGACACCCTTACATTGCGCAAAGGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTttctt < 1:285806/143‑1 (MQ=255) cTGGTGCGAAATGCGACCGCAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACACCCTTACAATGCGCATATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTtcttct < 2:65167/143‑1 (MQ=255) gTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTCATCATATGACAGCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAAGTTTAGCAAATGGCTTGCTTCTGCa > 2:203832/1‑143 (MQ=255) tGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTCATCTTTCCATTTTAGCACACGGCTCGCTACTGCaa > 2:57942/1‑142 (MQ=255) gAAATGCGACCGGAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACACCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCCATTTTTGCAATTGGCTTTCTTCTGCAtttt < 2:333163/143‑1 (MQ=255) gCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCtt < 2:80815/143‑1 (MQ=255) cGACCGAAGCAACCGCGCCACTACCGTCAATGGCCATCATATGACATCCAAACATTGCGCAAATGAGGGGTGGACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCACATGGCTTTCTTCTGCATCTTCGCttt > 1:479790/1‑143 (MQ=255) gACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACACCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGGTGCGCGCCCAGTAGTAATCTTTCAATCTTAGCAAAGGGCTGCGTTCTGCATTTTCGGtttt > 1:19332/1‑143 (MQ=255) ccGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACACCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATCTTCGCGTTtgt > 2:69730/1‑143 (MQ=255) gAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACGTCCGTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCCTTTTCGCTTTtgtgg > 1:205836/1‑142 (MQ=255) cgcgCCATTACCGTCAATAGTAATCATATGACATCCTTACATTGCGCAAATGAGACGCGCAAGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCACATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCGCcaca > 2:482944/1‑143 (MQ=255) cgccCCATTACCGTCAATGGTAATCATATGACATCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCcaca < 2:411943/143‑1 (MQ=255) gcgcCATTACCGTCAATAGTAATCATATGACACCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACAt > 2:161701/1‑143 (MQ=255) aTTACCGTCAATAGTAATCATATAACACCCTTACATTGCACAAATGAGGGGCGCACAAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTGTGCATTTTCGCTAGTGTGTCCCCCACAACAGCg > 2:84292/1‑143 (MQ=255) aTTACCCTCAATTGTTATGATATGACCTCCTTTCATTGCGCAAATGACGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTCTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATCAGCg < 2:471017/143‑1 (MQ=255) tCAATAGTAATCATATGACACCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATCAGCGTaatgaa > 2:49743/1‑143 (MQ=255) tAGTAATCATATGACACCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATCa < 1:132252/129‑1 (MQ=255) tAGTAATCATATGACACCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATCa > 2:132252/1‑129 (MQ=255) tAATCATATGACACCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATCAGCGTAATGAATGTTTTg > 2:434341/1‑143 (MQ=255) tAATCATATGACACCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTACCTGATGTGTCCCCCACATCAGCGTAATGAATGTTTTg > 1:370125/1‑143 (MQ=255) aTCAGATGACACCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATCAGCGTAATGAATGTTTTGAt < 1:482305/143‑1 (MQ=255) tCATATGACACCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAAAGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACCTCAGCGTAATGAATTTTTTGATc > 1:160217/1‑143 (MQ=255) tatGACACCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATCAGCGTAATGAATGTTTTGATCaaa < 1:530835/143‑1 (MQ=255) acacCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATCAGCGTAATGAATGTTTTGATCAAACaga < 1:417985/143‑1 (MQ=255) | GCCGTTTCCGGCCCAGGCATCAGCCTGTTCTGCCATCGTGGAACTGGGGGTAATAGGGTAGATGGCGATAACTTCACTGGTGCGAAATGCGACCGAAGCAACCGCGCCATTACCGTCAATAGTAATCATATGACACCCTTACATTGCGCAAATGAGGGGCGCACGAAATTGCTGCGCGCCCAGTAGTAATCTTTCAATTTTAGCAAATGGCTTTCTTCTGCATTTTCGCTTTTGTGTCCCCCACATCAGCGTAATGAATGTTTTGATCAAACAGA > NC_000913/1440656‑1440930 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |