| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 566777 = | NA (NA) | 1994 (44.710) | 266/280 | 0.0 | 97.3% | noncoding (1/1258 nt) | IS3 | repeat region |
| ? | NC_000913 | = 572471 | 56 (1.250) | coding (6/456 nt) | ybcN | DLP12 prophage; DNA base‑flipping protein | |||||
GAAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGC‑AATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACA‑CGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCT > NC_000913/566636‑566912 | gAAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGC‑AATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTg > 2:555070/1‑143 (MQ=255) gATCGCAGATATTAATTCTTTGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGC‑AATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATc < 1:207808/143‑1 (MQ=255) gATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGC‑AATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATc < 2:170830/143‑1 (MQ=255) cAGAAATTAAAGCTGAGTTCGAACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGC‑AATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTAcc < 1:136624/143‑1 (MQ=255) taTTAAAGCTAAGTTCCAACAGACACGCGCAAGGGTATGGCGGGCAAAGAGGC‑AATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGc < 1:656456/142‑1 (MQ=255) ttAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAAAATAAT‑GTCTCTTGGGGGCTCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCaa > 2:176835/1‑143 (MQ=255) ggctgggTTGGGACTGAGAGGAGGAGGGGTAGGACGGGCAAAGGGGC‑AATTATGCATTACCTGGGGACGCATATGGGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGt < 2:442066/137‑1 (MQ=255) gCTAAGTTGGGAGTGAAAGGAGCAAGTGTATGCCGGGCAAAGAGGC‑AATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTg < 2:701750/143‑1 (MQ=255) cTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGC‑AATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACA‑CGCGGCTa > 2:28762/1‑143 (MQ=255) acAAGGGTATGACGGGCAAAGAGGC‑AATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACA‑CGCGGCTAAGTGAGTaa > 1:852320/2‑143 (MQ=255) tGACGGGCAAAGAGGC‑AATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAAAAGGCGCAACCGTAATCTGATCTTACAAAACAATAGTGAACA‑CGAGGCTAAGTGAGTAGACTCtcagt > 1:112225/1‑143 (MQ=255) tggCAAAGAGGC‑AATTATTCATTACCTGTGGACGCATAAGAGTTTTTGTGCACAGGTCGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACA‑CGCGGCTAAGTGAGTAAACTCTCAGTCaga < 1:633495/142‑1 (MQ=255) ggttatagagGT‑TATTATTCATTACCTGGGTACGCATAAGAGCTGCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACA‑CGCGGCTAAGTGAGTAAACTCTCAGTCaga < 1:729238/137‑1 (MQ=25) gggCAAAGAGGC‑AATTATTGATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACA‑CGCGGCTAAGTGAGTAAACTCTCAGTCaga < 1:593720/143‑1 (MQ=255) aaaGAGGC‑AATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACA‑CGCGGCTAAGTGAGTAAACTCTCAGTCagagata > 2:44365/1‑140 (MQ=255) aatatgC‑AATTATTCATTTCCTGTGGTTTTATATTAGTTTTTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACGTCAAGCTGATCTTACCCAGCAATAGTGGACA‑CGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGa < 1:762660/138‑1 (MQ=18) aaGGGGC‑AAGTAGTCAGTGCCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACA‑CGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGa < 1:371702/143‑1 (MQ=25) ggC‑AATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACA‑CGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTca > 2:763956/1‑143 (MQ=255) gC‑AATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACA‑CGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTcac > 1:827070/1‑143 (MQ=255) ttattCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACA‑CGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGa < 1:28762/143‑1 (MQ=255) cATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACA‑CGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACaaaa < 2:841805/143‑1 (MQ=255) ttACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACA‑CGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAAc > 1:558461/1‑143 (MQ=255) cTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACA‑CGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTa > 1:561756/1‑143 (MQ=255) ggggACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGCTCTTACCCAGCAATAGTGGACA‑CGCGGCTAAGTGAGTAAACTCTCATTCAGCTGTGTCTCACTTTACaaaaaaaataaa > 1:164510/1‑136 (MQ=25) gggACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACA‑CGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCa < 1:104635/143‑1 (MQ=255) gggACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACA‑CGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCa > 1:621904/1‑143 (MQ=255) gACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACA‑CGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTCTCAAc > 1:171251/1‑143 (MQ=255) aTAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGAACA‑CGCGGCTAAGTGAGTAAACTCTCAGTCAAAGGTGACTCACATGACAAAAACAGTATCAACCAgga > 2:828328/1‑141 (MQ=255) agagCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACA‑CGCGGCTAAGTGAGTAAACTCTCAGTCAGACGTGACTCACCTGACCACCACAGTCTCAACCAGTaaaa > 1:809061/1‑143 (MQ=21) gCTTCTTTTCACAGTACGTTGCCGCGGTAACAGGCGCAACCGAAATCGGACCCTACCCAGCAAGAGTGGACA‑CGCGGCTAAGTGAGTAAACTCGCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAAc < 1:102282/143‑1 (MQ=17) ttCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACA‑CGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGGCAAAAACAGTATCAACCAGTAAAAAAccc < 1:555070/143‑1 (MQ=255) ttCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACA‑CGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAATAACAAACAGAAAAAAAccc > 1:703572/1‑143 (MQ=255) ttCTGTGCACAGGACGTTGCCGCGGTAACAAGCGCAACCGTAATCTGATCTCACCCAGCAATAGTGGACA‑CGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACCCGACAAAAAAAGTATCAACCAGTAAAAAAccc > 2:117769/1‑143 (MQ=18) gCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACA‑CGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTaaa > 1:724862/1‑143 (MQ=255) gCACAGGACATTGTCCCGCTACCCGGCTCAACCCTAATCTTATCTTACCCAGCAATAGAGGACA‑CGCGGCTAATTGAATGAACTCTCAGTCAGATGTGACTCACATAACAAAATCAGTATCAACCAGTAAAAAACCCCGTaaa < 2:316802/143‑1 (MQ=11) cacaGGACGTTGCCGCGGTAACAGGCGCAACCATAATCTGATCTTACCCAGTAATAGTGGACA‑CGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAAc < 1:640309/143‑1 (MQ=255) acaGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACA‑CGCGGCTAAGTGAGTAAACTCTCCGTCATATGTGACTCACATAACAAAAA‑AAAATCAAACAGAAAAAAACCCCGAAAACAg > 1:339578/1‑143 (MQ=17) acaGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACA‑CGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACCAAAACAGTATCAACCAGTAAAAACCCCAGTAAACa > 2:104007/1‑143 (MQ=255) gACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACA‑CGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCAt > 2:308814/1‑143 (MQ=255) gTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACA‑CGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCg > 1:144622/1‑143 (MQ=255) gcgGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACA‑CGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGaa < 2:766627/143‑1 (MQ=255) cgGTAACAGGCGCAACCGTAATCTGAGCTTACCCGGAAAAAGT‑GACATTTAGTCTAAGTGAGTGACCCCTCAGTACGAGGTGACTCCCATGACAAACACAGTATCCACACGTAACAAACCCCGGCAACCGCACACGccagcaa > 2:833325/1‑138 (MQ=255) aaCAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACA‑CGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCg < 2:621904/143‑1 (MQ=40) aCAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACA‑CGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACACAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGACTGAATTTcac > 1:759945/1‑141 (MQ=255) aCAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACA‑CGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAAACAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTAGc > 1:394109/1‑143 (MQ=255) cAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACA‑CGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCa < 2:561756/143‑1 (MQ=38) aGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACA‑CGCGGCTAAGTGAGTAAACTCTCCGTCAGAGTTGACTCACATGACAAAAACAGTATAAACAAGTAAAAAACACAGTAAACAGCATTAGACTAAATTTCGCAg > 1:362774/1‑143 (MQ=11) aCCGTAATCTTATCTTACCCATTTATAGTGGATA‑CGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAAGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGcc < 1:632293/143‑1 (MQ=11) aCCGTAATCTGATCTTCCCCAGCAATCGTGGACA‑CGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAACCCCAGTATCAACCAGTACAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGcc < 2:424327/143‑1 (MQ=11) cGTAATCTGATCTTAACCAGCAATAGTGGACA‑CGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGTCAAAAACAGTATCATCCAGTTTAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCt < 1:836238/143‑1 (MQ=11) | GAAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGC‑AATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACA‑CGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCT > NC_000913/566636‑566912 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |