| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 2 (0.040) | 46 (1.160) | 42/250 | 0.0 | 97.1% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 1 (0.030) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
CGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAG > NC_000913/1209479‑1209760 | agatgcttttgcggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGt < 2:529079‑M2/3‑1 (MQ=255) ttgtggtgcgtcattccacccccacggaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTa < 1:302102‑M2/6‑1 (MQ=255) gtttttccggcagtctgcccccactaaataattactgtttgctcaataccaccaatcataaccgttatagctatgaaaccggtgcgtactaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTAt < 1:359254‑M2/7‑1 (MQ=255) ttgcggcattccacccccactgaatgattactgattgctcaataccaccaatcctaaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgcggcattgagttttgctccttctcccaaaccaaCGTTTATCaaa > 2:726653‑M2/133‑143 (MQ=255) ggcattccacccccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATga > 2:530931‑M2/129‑143 (MQ=255) ggcattccacccccactgaatgattactcattgaacaatcccgccaatcataaccggtatagctatgaaaccggtgcgaccaaaagtagccgttgcttcattgagttttgcacctgctcccaaaccaaCACTTATGAAAAGga > 2:212396‑M2/129‑143 (MQ=255) ttccacccccactgaatgattactgattgctcaataccaccaatcataaccggtaaagctatgaaaccgctgcatcctaatctagccgttgctgcattgagttttgacacttctccccaaccaaCGATGATGAaaaagaagca > 2:805035‑M2/125‑141 (MQ=255) ccccactgaaggattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttgtgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACa < 2:813504‑M2/25‑1 (MQ=255) gctccggaatgattactggttgcttagtgcgactaagcataacggggatagctatgaaaccggtgcgtcctaatgtagccgttgctggattgagttttgctgctgctcccaaaccaaCGTTTATGAAAATGAAGAAATAACaa < 2:254717‑M2/26‑1 (MQ=255) ccactgaatgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctccaaaaccaaCGTTTATGAAAATGAAGAAATAACAAg > 2:73769‑M2/117‑143 (MQ=255) cttcAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGCACCTGGACACCAACAGGTAATGCACAACATTATAACAAACCAAAAAAAAAGAAAATAAAGAAATAACAAGCaaag > 1:49101/1‑142 (MQ=255) gattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGACCTAACACGCAACTGTCATCATtca > 1:282944‑M2/101‑142 (MQ=255) ctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCtt > 1:640874‑M2/96‑143 (MQ=255) tcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcatggagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCCTCATTACTGCatt > 1:624185‑M2/95‑143 (MQ=255) caaaaccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCtttt < 1:344354‑M2/50‑1 (MQ=255) ataccaccaatcataaccggttttgctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaacctaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTAc < 2:657474‑M2/52‑1 (MQ=255) ataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTAc < 1:605099‑M2/52‑1 (MQ=255) ccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAgggg < 1:311987‑M2/58‑1 (MQ=255) ataaccggtatagctatgaaaccggtgcgtcctaatgtatccgttgctgcattgaattttgctccttctcccaaaccaaCGTTAATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGTATTTa > 1:489234‑M2/80‑143 (MQ=255) taaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTaa > 2:376336‑M2/79‑143 (MQ=255) accggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaacccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGAGGATTTAACa > 2:248844‑M2/77‑143 (MQ=255) ccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACAt < 1:442363‑M2/68‑1 (MQ=255) cgggttagcttggagaccggtgcgtcctaatgtatccgttgttgtattgagttttgctccttctcccaattcatCGTTTATGATAATGAAGAAATATCAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATg < 2:750710‑M2/69‑1 (MQ=255) tagctatgaaacctgtgcctcctaatgtagccgttgctgcattgagttttgctccttctccccaaccctCCTTTATGAAAATGAAGAAATCACAAGCTAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTAt < 1:339716‑M2/74‑1 (MQ=255) agctatgaaaccggtgggtcctaatgtagccgttgctgcattgagttttggttgtgaacccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTAtt < 1:846233‑M2/75‑1 (MQ=255) agctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccctctcccaaatgaaCTTTTATGAAAATGAAGAAATACCAAGCAAATGGCATCATTCCTGCTTTTACCTGTGGGATTTAACATGCTTAtt > 1:430014‑M2/69‑143 (MQ=255) ctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTgg < 1:685339‑M2/77‑1 (MQ=255) ctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGCTTATGAAAATGAAGAAATAACAAGCAAATAGCATCATTCCTGCTATTACCAGGGCGACTTAACATGCTTATTgg > 2:383282‑M2/67‑143 (MQ=255) atatgaatgcggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcctaatccatCTTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCAGTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTgg < 1:212396‑M2/77‑1 (MQ=255) tatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCACCATTCCTGCTTTTACCAGGGGAATTTAACATGCATATTGGc > 2:308911‑M2/66‑143 (MQ=255) aaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGACATCATTACTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATg > 2:220955‑M2/62‑143 (MQ=255) accggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTa > 2:166000‑M2/60‑143 (MQ=255) tcctaatgtagccgttgctgcattgagttttgctccttctccccaacaaaCGTTTATGCAAATGAAGGCATAACATGCAAATGGCATCATTCCTCCTTTTACCAGGGGAATTTAACATACTTATAAGATATGTACGCATATca > 1:693068‑M2/51‑143 (MQ=255) cctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATcaa < 2:136983‑M2/94‑1 (MQ=255) taatgtagctgttgctgcattgagttttgttccttctcccaaatcaaCGTTTATTAAAATGAAGAAATAACAAGCAAATGGCATCATTGCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATcaaca < 1:519859‑M2/96‑1 (MQ=255) taatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGAGGATTTAAAATGCTGATTGGTTATGCACGCGTATcaaca > 2:365127‑M2/48‑143 (MQ=255) atgtagccgttgctgcattgatttttgctccttctcccaatccaaCGTTTATGAAAATGTAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACaaa < 2:28871‑M2/98‑1 (MQ=255) tgtagccgtggcttcagtgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTTCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAAt < 2:236451‑M2/99‑1 (MQ=255) cagcggtggctgcattgagttttactccttctcccaaaccagCCTTTATGAAAATGAAGAAATAACAAGCAAATGGCAACATTCCTGCTGTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGa < 2:279025‑M2/101‑1 (MQ=255) ccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAATAAGTTGTTGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCa < 1:530931‑M2/104‑1 (MQ=255) ttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGaa < 2:51571‑M2/107‑1 (MQ=255) ttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTGTACGCTGGCATGGAACATGCTTATTGGCTATGTACGCGTATCACCATATGACCAGaa > 1:616462‑M2/37‑143 (MQ=255) ttgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTGCTGCTTTTACAAGGGGGATTTAACATGCTTCTTGGCTATGTAGGCGTCGCAACAAATGCCCAGAACACACATc > 2:406480‑M2/29‑143 (MQ=255) agttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAAAACACAGATATAc > 1:473121‑M2/26‑143 (MQ=255) agttttgctccttctcccaaaccaaCGTTTATGAAAAAGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTGACCAGGGGGATTTAACATGCTTATTGTCTATGTACGCGTATCAAAAAATGACCAGAACACAGATCTAc > 2:769338‑M2/26‑143 (MQ=255) ttgctccttctcccaagcccaCGATAAAGAAAAGGAAGAAAGAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACg < 1:559093‑M2/122‑1 (MQ=255) ctccTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATAGGATAAGTAAGAGGATAAACAAAAGAAAAGAAAAAAAATCTAAAAAGTaa > 1:5421/3‑143 (MQ=255) tccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAAt < 1:166000‑M2/126‑1 (MQ=255) ctcctaaaccaaCGTTTATGAAAATGAAGAAATAACAGGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCt < 2:469501‑M2/131‑1 (MQ=255) cccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGa > 1:557755‑M2/11‑143 (MQ=255) aaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACt > 1:621860‑M2/8‑143 (MQ=255) aaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGCACtg > 1:493030‑M2/7‑143 (MQ=255) aCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACGCAGCTCTACGACGTAATGCGCTGcactgtgtac > 1:294946‑M2/2‑140 (MQ=255) | CGGATAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAG > NC_000913/1209479‑1209760 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |