| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,368,101 | T→C | A21A (GCT→GCC) | arnA → | fused UDP‑4‑amino‑4‑deoxy‑L‑arabinose formyltransferase/UDP‑glucuronate dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,368,101 | 0 | T | C | 96.3% | 54.6 / NA | 27 | A21A (GCT→GCC) | arnA | fused UDP‑4‑amino‑4‑deoxy‑L‑arabinose formyltransferase/UDP‑glucuronate dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base C (14/12); total (15/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.55e-01 | |||||||||||
TCTACACCGATGTCCGCGCCCGCCCCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCTGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGTTTATGCGCCGGATAACGTTAATCATCCGCTGTG > NC_000913/2367963‑2368238 | tCTACGCCGTTGTCCGCGCGCGGCCCTGGTCTTTTGTCGAGCATGTTATCGGTCCATCCAGCATGGAATATGAATGATGAAAATCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTTAAGCCCTGCTGGccgccg < 2:294702/143‑1 (MQ=255)tCTACACCGATGTCCGCGCCCGCCCCCGCTATTTTGTTCAGCAAGTTATCCGTCCCTCCAGCACGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGccgccg > 1:819373/1‑143 (MQ=255) acacCGATGTCCGCGCCCGCCCCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGACCTGCTGGCCGCCGGtt > 2:476783/1‑143 (MQ=255) gATGTCCGCGCCCGCCCCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGCATTGAAGCACGGCTGGCCGCCGGTTACGaa > 2:582215/1‑143 (MQ=255) ccGCGCCCGCCCCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCGGGGTACGAACTTAg > 2:657329/1‑143 (MQ=255) cgcgCCCGCCCCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGTCTATACCTTGCGAAACCTGTCGTTTTTGCTTATCTCTATATGGGATGCCTCGGTATTGAAGCCCGGCTGGCCGCCGGTTACGAAATTAgc < 1:191009/143‑1 (MQ=255) cgcgCCCGCCACCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAgc > 1:486504/1‑143 (MQ=255) tcccgcccCTCCTGTTTTTGTCAGCAGGTGATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATTTGGGATGCCTCGGTATTGAAGCCCTGATGGCCGTGTTTTACGAAATTAGCGcc < 2:514685/142‑1 (MQ=255) cGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCCCCGGTTACGCAACTAGCGCCGTTTTCAca > 2:579290/1‑142 (MQ=255) ttttGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGCGATCCCTCGGTATTGCAGCCCTGCTGGCCGCCGGTTACGAAATTCGCGCCATTTTTACCCATAc > 2:802888/1‑143 (MQ=255) aGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCACTGCTGGCCGCCGGTTACGAAATTAGCGCCATCTTTACCCATACTGATaacc > 2:612509/1‑141 (MQ=255) gCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATTTGGGTTGCCTCGGTATTGTAGCCTTGCTTGCCGCCGGTTACAAAAATAGAGACATTTTTACCCATACTGATAAtac > 1:21132/1‑141 (MQ=255) gCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGAGGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTCCGATATTAGCGCCATTTTTACCCATACTAATAATca > 1:512297/1‑142 (MQ=255) gCAAGTTATACGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTAGCCGCCGGTTACGAAATTAGCACCATTTTTACCCAACCTTATAATcc > 2:677985/1‑143 (MQ=255) aaGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAATACCGTCGTTTTTGCCTACCACGATATGGTATGCCTCGGTATTGTTGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCg < 1:431696/143‑1 (MQ=255) aaGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCTGCCGATTACGAAATTAGCGCCATTTTTAACCAAAATGATAATACCg > 1:590185/1‑143 (MQ=255) gTTATCCGTCCATTCAGCAAGGAAAATGAATAATGAAAACCGTTGTTTTGACCCACCACGATCTTGTATTTTTCGTTTTTGATTTTTTGCTGGCCGCAGGTTACGAAATGAGCGCCATTTTTACCCATACTGATAATCCCGGt < 1:576882/143‑1 (MQ=255) ttATCCGTCCATCGAGCAAGTAAAATGAATAATGACATCCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTg < 2:347592/143‑1 (MQ=255) gTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATAGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGCTACGAAATTAGCGCCATTTTTAAACATACTGATAATACCAGTGAAAAAg > 2:315893/1‑143 (MQ=255) aGGAATATGAAGTATGGAAAACGTCGTTTGTGCCTACCTCAATATGCAACGCGTCGGTATTGAAGTCCTGCTAGCCGCCTGTTACGAAATTAGTGCCATTTTTACCCATACTGATAATCCCTGTGAAAAAGCCTTTTATGGtt < 2:46778/143‑1 (MQ=255) tGACAACCGTCGTTTTCGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGATTTTAGCGCCATTTTTACCCTTACTGATAGTAACGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTg < 1:582215/143‑1 (MQ=255) ccGTCGTTGTTGCCTACCACGATATGGTATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGgcggcg < 2:709887/143‑1 (MQ=255) tACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCAGGTGAAAAAGCCTTTTATGGTTAGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTcc > 1:80875/1‑143 (MQ=255) aCCACGGTATTGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCg < 2:819373/143‑1 (MQ=255) cACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTTCCCATTCTGTTTTTCTTGGTGAAAAAGCCTTTTATGGTGCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGt < 1:246767/143‑1 (MQ=255) gggATGCCTCGGTATTGAAGCCCTGCTGGCCACCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATATTTCCGTTGAAAATGTTTTTTATGGTTCGGTGGCTAGTCTGGCGGCGGAAAGAGGCATTCCGGTTTATgcgc < 1:512423/143‑1 (MQ=255) tCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAACGCCATTTTTACCCATACTGATAAACCCGGTGAAAAAGCCTTTTATGGTTCGGTGTCTCGTCTTGCGGCGGAAAGAGACATTACGGTTTATGCACCGTATAAc > 1:738556/1‑143 (MQ=255) tATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCTCGGTGAAAAAGTCTTTTATGGTTTTGTTGCTTGTCTGGCGGCGGAAAGAGGCATTCCGGTTTATGCGCCGGATAACGTTa < 1:466300/143‑1 (MQ=255) gAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCTTCTAGCGGAGGGAAAAGGCATTCCGGTTTATCCGTCGGTTAACGTGAatga > 2:488238/1‑141 (MQ=255) ctggccgCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAACGCCTTTCATGGTTCGGTGGCTCGTCTGGCGGCGGACAGCGGCATCCCGGGTTATGCGCCGGATAACGCTAATCATCAGCtgtg > 1:353475/1‑143 (MQ=255) | TCTACACCGATGTCCGCGCCCGCCCCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCTGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGTTTATGCGCCGGATAACGTTAATCATCCGCTGTG > NC_000913/2367963‑2368238 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |