Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_000913 | 760,485 | G→A | G594S (GGC→AGC) | sucA → | subunit of E1(0) component of 2‑oxoglutarate dehydrogenase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 760,485 | 0 | G | A | 92.9% | 97.8 / ‑6.5 | 44 | G594S (GGC→AGC) | sucA | subunit of E1(0) component of 2‑oxoglutarate dehydrogenase |
Reads supporting (aligned to +/- strand): ref base G (2/1); new base A (23/16); total (26/18) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
AAGTTGAGATGAAGCGCCTGCAGGAGCTGGCGAAACGCATCAGCACGGTGCCGGAAGCAGTTGAAATGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGGGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTCGCGGTACCTTCTTCCACCGCCACGCGGTGATCCACAACCAGTCTAACGGTTCCACTTACA > NC_000913/760348‑760623 | aaGTTGAGATGAAGCGCCTGCAGGAGCTGGCGAAACGCATCAGCACGGTGCCGGAAGCAGTTGAAATGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGt < 1:53267/143‑1 (MQ=255) gAAGCGCCTGCAGGAGCTGGCTAAACGCATCAGGACGGTGCCGGAAGCAGTTGAAATGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAAcc < 2:129651/143‑1 (MQ=255) cTGCAGGAGCTGGCGACACGCATCAGCACGGTGCCGGAAGCAGTTGAAATGCAGTCTCGCGTTGCCACGGTTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAGACTGTTCGCCTGGAGCGGTGCGGAACACCTCGCGTa > 1:598867/1‑143 (MQ=255) gAGCTGGCGAAACGCATCAGCACGGAGCCGGAAGCAGTTGAAATGCAGTCTCGCGTTGCCAAGATTTATAGCGATCACCAGGCGATGCCTGCCGGTGAGAAACTGTTCGACAGGAGCGGTGCGGCAAACCCCGCTTACGCCAc > 2:275950/1‑143 (MQ=255) aGCTGGCGAAACGCAACAGCACGGTGGCGGAAGCAGCTAAAATGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCCATGGCGACCGGTGAGACACTGTTCGACTGGAGCGGTGCGGAAAAACGCGAGTACGCCACg > 2:687217/1‑143 (MQ=255) tGGCTAAACGCACCAGCACGGTGCCGGAAGCAGTTGAAATGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTg < 2:511448/143‑1 (MQ=255) gCGAAACGCATCAGCACGGTGCCGGAAGCAGTTGAAATGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAAATGTTTGGCTGGGGCGGTGCGGAAAAACTCGCGTAGGCCACgacggt > 2:126232/1‑138 (MQ=255) aaCGCATCAGCACGGTGCCGGAAGCAGTTGAAATGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGTGAAACTGTTCGACTGGCGCGGTGCGGAAGACCTCGCTTACGCCACGCTAGTtgat > 1:688822/1‑143 (MQ=255) cGCATCAGCACGGTGCCGGAAGCAGTTGACATGCAGTCTCGCGTTCCCAAGATTTATGGCGATCGCCAGGCGATCGCTGCCGGGGAGAAACTGTTCGACTGGGGCGGGGCGGAGCACCCCGCTTCCGCCGCGCGGGtgcgtgc > 1:335226/1‑137 (MQ=255) gCATCAGCACGGTGCCGGAAGCAGTTGAAATGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGTAGCGGTGCGGAAAAAATCGCTTACGCCACGCAGGTtgatgac > 1:593803/1‑142 (MQ=255) cATCAGCACGGTGCAGGAAGCAGTTGAAATGCAGTCTGGTGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTTAGAAACTGTTCGACTGGAGAGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAg < 2:392794/143‑1 (MQ=255) cAGCACGGTGCCGGAAGCAGTTGAAATGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCa > 1:490745/1‑143 (MQ=255) aGCACGGTGCCGGAAGCAGTTGAAATGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAACCCTCGCTTACGCCACGCTGGTTGATGAAggtct > 1:183700/1‑140 (MQ=255) gCACGGTGCCGGAAGCAGTTGACATGCAGTCTCGCGTTGCCAAGATTTATGGCGATCCACAGGCGGTGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCCTACGCCACCCCGCCTCATGAAAGCAtt > 2:556918/1‑143 (MQ=255) gCACGGTGCCGGAAGCAGTTGAAATGCAATCTCGCGTAACCACGATGTATGGCGATCGCCAAGCGATGGCTGCCGGTGAGAAACTGTTCGACTGAAGCGGTACGGAAAACCTCGCTTACGCCACGCTGGTTGACGCAggactg > 2:512449/1‑139 (MQ=255) gggTGCTGGAAGCAGTTGAAATGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGGGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCg < 1:766436/142‑1 (MQ=255) ggAAGCAGTTGAAATGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGcc > 1:745280/1‑143 (MQ=255) gAAGCAGTTGAAATGCAGTCTCGCGTTGCCAAGATTTATAGCGATCGCCAGGCGCTGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGACAACCTCGCTTACGCCACGCTGGTTGATGACGGCAGTCCGGGTCGccg > 2:847284/1‑142 (MQ=255) cAGTTGAAACGCAGGCCCGCCTTGCCAAGAGTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCg < 1:150381/143‑1 (MQ=255) aGTTGAAATGCAGTCTCGCGTTGCCAAGACTTAGGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACATCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCgg > 1:626028/1‑143 (MQ=255) gTTGAAATGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAACCACCGCTTACGCCACGCGGGTTGATGAAGCGCCACCGGTTCGACTGGCggg > 2:617162/1‑143 (MQ=255) gAAATGCAGTCTCGCGTTGCCAAGACTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGa < 2:724144/143‑1 (MQ=255) aaaTGCAGTCTCGCGTTTCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGaa < 1:751423/143‑1 (MQ=255) tctcGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGCTGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCgg > 2:452601/1‑143 (MQ=255) tctcGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCgg > 1:112412/1‑143 (MQ=255) gggTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTTGCCTGTCGGGTGAAGACTCCGGTcgc < 2:432619/141‑1 (MQ=255) gcgTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTcgc > 2:811520/1‑143 (MQ=255) ggTTGCCAAGATTTATGGCGGTCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTcgcg < 2:299741/142‑1 (MQ=255) cgTTGCCAAGTTTTATGGCGTTCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTcgcg < 1:217312/143‑1 (MQ=255) gtgtggttCGCCAGGCGATGGCTGCCGGTGAGGAATTGTTCGACTGGGGCGGTGCTGAAAACCTCGCTTACGTCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTCGCGGTACCTTCTTCCAc < 2:342301/136‑1 (MQ=255) ggCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGGCTGTCGGGTTAACACTCCGGTCGCGGTACCTTCTTCCACCg < 2:697007/143‑1 (MQ=255) aTCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGGCACGCCGGCTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTCGCGGTACCTTCTTCCACCGCCAc > 1:313097/1‑143 (MQ=255) gCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGTTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTTTCAGGTGAAAACTCACGTCTCGGTACTTTTTTTCAACCCCAcgca > 1:521514/1‑142 (MQ=255) gCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGCCGGCATTCCGGTTCGCCTGTCCGGTGAATACTCCGGTCGCGATACCTTCTTCAACCGCCAcgct > 1:639201/1‑142 (MQ=255) gCCAGGCGATGGCTGCCGGCAAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGACGACTCCGGTCGCGGTGCCTTCTTCCACCGCCAcgcc > 2:181792/1‑142 (MQ=255) ccAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTCGCGGTACCTTCTTCCACCGCCACGCgg > 1:683097/1‑143 (MQ=255) ccAGGCGATGGCTGCCGGAGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCATAACGGTTCGCCTGGCGGGTGAAGACTCCGGTCGCGAGACCATCATCCACCGCCAcggcg > 2:42302/1‑140 (MQ=255) acgCGATGGCTGCCGGTGAGAAACTGTTAGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCCTTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTCGCGGGCCACTCTCGCGCCGCCACGCGGTg > 2:344182/3‑143 (MQ=255) gCGATGGCTGCCGGTGAGAAACTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTCGCGGTACCTTCTTCCACCGCCACGCGGTGAt < 2:112412/143‑1 (MQ=255) cTGTCGTTGAGAATCTGTTCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTCGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTCGCGGTACCTTCTTCCACCGCCACGCGGTGATCCACAAc < 2:278615/143‑1 (MQ=255) gCCGGTGACATACTGTTCGACTGGAGCGGTGCGGAACACCTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCACCTGTCGGGTGAAGACTCCGGTCGCGGTACCTTCTTCCACCGCCACGCGGTGATCCACAACCa < 2:216082/143‑1 (MQ=255) cTGTTCTACTGGTGCGTTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCATGCCGGTTCGCCTGTCGGGTGAAGACTCCGGTCGCGGTACCTTCTTCCACCGCCACGCGGTGATCCACAACCAGTCTAACGGTTc < 1:716970/143‑1 (MQ=255) tCGACTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTCGCGGTACCTTCTTCCACCGCCACGCGGTGATGCTCAACCCGTCTGACTGTTTCatt > 1:125451/1‑141 (MQ=255) cTGGAGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGTATTCCGGTTCGCCTGTCGGGCGAAGACTCCGGTCGCGGTACCTTCTTCCACCGCCACGCGGTGATCCACAACCAGTCTAACGGTTCCACTTaca < 1:121213/143‑1 (MQ=255) | AAGTTGAGATGAAGCGCCTGCAGGAGCTGGCGAAACGCATCAGCACGGTGCCGGAAGCAGTTGAAATGCAGTCTCGCGTTGCCAAGATTTATGGCGATCGCCAGGCGATGGCTGCCGGTGAGAAACTGTTCGACTGGGGCGGTGCGGAAAACCTCGCTTACGCCACGCTGGTTGATGAAGGCATTCCGGTTCGCCTGTCGGGTGAAGACTCCGGTCGCGGTACCTTCTTCCACCGCCACGCGGTGATCCACAACCAGTCTAACGGTTCCACTTACA > NC_000913/760348‑760623 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |