| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC JC | NC_000913 | 1,979,486 | IS5 (+) +4 bp | 100% | intergenic (‑271/‑264) | insA‑5 ← / → uspC | IS1 protein InsA/universal stress protein C |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1979486 = | 0 (0.000) | 34 (1.020) | 28/264 | NT | 100% | intergenic (‑271/‑267) | insA‑5/uspC | IS1 protein InsA/universal stress protein C |
| ? | NC_000913 | 2101749 = | NA (NA) | noncoding (1195/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 1979489 | 0 (0.000) | 43 (1.300) | 42/264 | NT | 100% | intergenic (‑274/‑264) | insA‑5/uspC | IS1 protein InsA/universal stress protein C |
| ? | NC_000913 | = 2290113 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
AGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTA‑TTTTTAAACAGACACTTACCGCACAACAAACTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1979357‑1979489‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTT < NC_000913/2290113‑2289972 AGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTA‑TTTTTAAACAGACACTTACCGCACAACAAACTAAGGAAGGTGCG > 1:510201/1‑143AGGAATAATCGAAATGGGACGTTGCGCACAGTCAAAATAACTCACCGTAAATCCTCCACTGCCATAAATTATCACTTTCATGCAATACCAGATAAGCTA‑TTTTTAAACGGACACTTACCGCACAACAAACTAAGGAAGGTGCG < 2:321883/143‑1 TAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTA‑TTTTTAAACAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAA < 1:184775/143‑1 TCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAATTAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTA‑TTTTTAAACAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTC > 1:575876/1‑143 CGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTA‑TTTTTAAACAGACACTTACCGCACAACAAACTAAGGAAGCTGCAAAAAAGTCC > 2:165914/1‑143 TGGGATGTTGCGCACAATCAAAATAACTCACGGTAAATAACCATCGGCTCTAAATAATCACTTTCATGCAAGACCAGATAAGCTA‑TTTTTAAACAGACACGTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGAT < 2:336634/143‑1 agGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTA‑TTTTTAAACAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGA < 2:561913/141‑1 CGCCCAGTCAAAATAACGCACCGTAAATAATCGTCTGCTGTAAATAATCACTTTCATGCAATACCAGATAAGCTA‑TTTTTAAACAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCAT < 2:241020/143‑1 GCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTA‑TTTTTAAACAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATG > 1:95578/1‑143 cCAGTCAAGATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTA‑TTTTTAAACAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTT < 2:221972/142‑1 CAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTA‑TTTTTAAACAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTT < 1:502667/143‑1 AATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTA‑TTTTTAAACAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCT < 1:181127/143‑1 ATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTA‑TTTTTAAACAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTG < 1:280964/143‑1 AACTCACCGTAAATAAGCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTA‑TTTTTAAACAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGA < 2:374040/143‑1 CCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTTAAACAGACACTTACCGCACAACAAACTAAGGAAGGTGCGGACAAGTCCCTGATATGAGATCATGATTGTCCTCTGGAGCAAT > 2:51391/1‑143 CGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTA‑TTTTTAAACAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAG < 2:456124/143‑1 TAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTA‑TTTTTAAACAGATACTTACAGCACAACAAACTAAGAAAGGTGCGAACAAGTACCGGATATTAGATCCTGATTGTCAGCTGCAGCAATAGAA > 2:388326/1‑143 AAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTA‑TTTTTAAACAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAAC < 1:134780/143‑1 ATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTA‑TTTTTAAACAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAG < 1:44299/143‑1 TAATGATCTTCTATAAATAATCACTTTCATGCAATACCAGATAAGCTA‑TTTTTAAACAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGG < 2:619086/143‑1 ttATCTGCTATCAAGAAGCACTTTCATGCAATACCAGATAAGCTA‑TTTTTAAACAGACACTTACCGCACAACTAAGTAAGGAATGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTT < 2:396646/141‑1 CATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTA‑TTTTTAAACAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGACCCGTATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTC < 2:360069/143‑1 cTCTGCTATAAATAATCACTTTCATGCAACACCAGATAAGCTC‑TTTTTAAACAGACACTTCCCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCA < 1:196364/142‑1 CTATAAATAATCACTTTCATGCAATACCAGATAAGCTA‑TTTTTAAACAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATG > 1:253102/1‑143 gATAAATGATCCTTTTCGTGCCATACCAGATAAGATA‑TTTCTAAACAGACACTTACCGCACAACAAACTAAGTAAGGTGCGAACAAGGCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGA < 2:161012/142‑1 TATAAATAATCACTTTCATGCAATACCAGATAAGCTA‑TTTTTAAACAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGA > 2:627115/1‑143 TATAAATAATCACTTTCATGCAATACCAGATAAGCTA‑TTTTTAAACAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGA < 2:399744/143‑1 AAATATTCACTTTCATGCAATACCAGATAAGCTA‑TTTCTAAACAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTC < 2:175258/143‑1 AAATAATCACTTTCATGCAATACCAGATAAGCTA‑TTTTTAAACAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATCGGGGGTAGAAATACATCTGGCGCCAAAGAACAGGGTTCATCATGAGTC > 1:476421/1‑143 TAATCACTTTCATGCAATACCAGATAAGCTA‑TTTTTAAACAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATC > 1:439974/1‑143 ATCACTTTCATGCAATACCAGATAAGCTA‑TTTTTAAACAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAA < 2:625961/143‑1 CACTTTCAGGCAATACAAAATAAGCTA‑TTTTTAAACAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACT < 2:350022/143‑1 TCATGCAATACCAGATAAGCTA‑TTTTTAAACAGACACTTACCGCACAACCAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATAAAGTTTATCATCTGGAGCCATAGAACAAGGTTCCTCATGAGTCATCAACTTACCT > 1:173789/1‑143 CAATACCAGAGAAGCTA‑TTTTTAAACAGACACCTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCC < 1:599854/143‑1 gTACCAGATAAGCTG‑TTTGTAAACAGGCACTTGCCGCACGACAGACGAAGGAAGGTGCGAACAAGGCCCTGATAGGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGA < 2:17301/142‑1 cATAAGACA‑TTTTTAAAAAGACACTAACCCCACAACAACCTAGGGAAGGTGCGAACAAGTCCCTGATATCAGATCATGTTTGTCACCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGA < 1:71945/142‑1 TAAGCTA‑TTTTTAAACAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAAT > 2:449140/1‑143 TAAGCTA‑TTTTTAAACAGACACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGGTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAAT < 2:418513/143‑1 AAGCTA‑TTTTTAAACAGACACTTACCGCACAACAACCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATT < 1:124715/143‑1 gctACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATGTGGAGCCATAGAACAGGGTTCATCATGAGCCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGT < 2:120467/140‑1 CACTTACCGCACAACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCA < 1:487789/143‑1 CAACAAACTAAGGAAGCGGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAG < 2:405316/143‑1 AACAAACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGGCAGTGAATTCCGCAATAAGCGCCTTCGGAACAGAAAAGA > 1:252617/1‑143 ACTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATgt > 1:85278/1‑141 gTAAGGAAGGTGCGAACAACTCCATGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTT < 2:134011/142‑1 CTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCGATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGACTTGAGCCGTAAGCGCCGTCAGACCCGACACGAGATTTT > 2:237088/1‑143 CTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAAAAAAGAGATTTT > 2:50347/1‑143 CTAAGGAAGGTGCGAACAAGGCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTT < 2:544413/143‑1 TAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAATTTGTTTTGTCATGAGTCATCAGCTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTC > 1:25280/1‑143 TAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTC < 1:183586/143‑1 TAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTC > 1:160995/1‑143 TAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTC > 1:154084/1‑143 TAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGACTTTa > 1:473424/1‑142 TAAGGAAGGGGCGAACAAGTCCCTGAGATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTC < 2:160321/143‑1 AAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTGCATCATGAGTCATCAACTTACCTTCGCCGACCGTGAATTCAGCAGTAAGCGCCGTCAGGCCAGAAGAGAGAGTTTag > 1:24182/1‑141 AGGAAGGTGCAAACAAGTCCCTGCTAAGAAATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTT < 1:618457/143‑1 AGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTA‑TTTTTAAACAGACACTTACCGCACAACAAACTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1979357‑1979489‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTCTT < NC_000913/2290113‑2289972 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |