New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 315852NA (NA)25 (0.780) 10/256 NT NA noncoding (624/1255 nt) IS3 repeat region
?NC_000913 = 315875 NA (NA)noncoding (647/1255 nt) IS3 repeat region

Only 100 of 123 total aligned reads displayed.

ACGCGTCAGCAGTTCCGCCAACACTGCGACAGCGTTGTCCTCGCGGCTTTTACCCGGTCAAAACAGCGTTACGGTGCCCCACGCCTGACGGATGAACTGCGTGCTCAGGGTTACCCCTTTAACGTAAAAACCGTGGCGGCAAGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/315707‑315852
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctTTGCCCTCAGTCCCTGACGGCGCAGGCTTGCCGCCACGGTTTTTACGTTAAAGGGGTAACCCTGAGCACGCAGTTCATCCGTCAGGCGTGGGGCACCGTAACGCTGTTTTGACCGGGTAAAAGCCGCGAGGACAACGCTGTC  <  NC_000913/315875‑315734
                                                                                                                                                                                                                                                                                                
ACGCGTCAGCAGTTCCGCCAACACTGCGACAGCGTTGTCCTCGCGGCTTTTACCCGGTCATAACAGCGTTACGGTGCCCCACGCCTGACGGATGAACTGCGTGCTCAGGGTTACCCCTTTAACGTAAAAACCGTGGCGGCAAG                                                                                                                                                   >  1:454389/1‑143
ACGCGTCAGCAGTTCCGCCAACACTGCGACAGCGTTGTCCTCGCGGCTTTTACCCGGTCAAAACAGCGTTCCGGTGCCCCACGCCTGACGGATGACCTGCGTGCTCAGGGTTCCCCCTTTCACGTCACAACCGTGGCCGCAAG                                                                                                                                                   >  1:620411/1‑143
ACGCGTCAGCAGTTCCGCCAACACTGCGACAGCGTTGTCCTCGCGGCTTTTACCCGGTCAAAACAGCGTTACGGTGCCCCACGCCTGACGGATGAACTGCGTGCTCAGGGTTACCCCTTTAACGTAAAAACCGTGGCGGCAAG                                                                                                                                                   <  1:378322/143‑1
ACGCGTCAGCAGTTCCGCCAACACTGCGACAGCGTTGTCCTCGCGGCTTTTACCCGGTCAAAACAGCGTTACGGTGCCCCACGCCTGACGGATGAACTGCGTGCTCAGGGTTACCCCTTTAACGTAAAAACCGTGGCGGCAAG                                                                                                                                                   <  1:495712/143‑1
ACGCGTCAGCAGTTCCGCCAACACTGCGACAGCGTTGTCCTCGCGGCTTTTACCCGGTCAAAACAGCGTTACGGTGCCCCACGCCTGACGGATGAACTGCGTGCTCAGGGTTACCCCTTTAACGTAAAAACCGTGGCGGCAAG                                                                                                                                                   <  1:559752/143‑1
ACGCGTCAGCAGTTCCGCCAACACTGCGACAGCGTTGTCCTCGCGGCTTTTACCCGGTCAAAACAGCGTTACGGTGCCCCACGCCTGACGGATGAACTGCGTGCTCAGGGTTACCCCTTTAACGTAAAAACCGTGGCGGCAAG                                                                                                                                                   >  1:637112/1‑143
ACGCGTCAGCAGTTCCGCCAACACTGCGACAGCGTTGTCCTCGCGGCTTTTACCCGGTCAAAACAGCGTTACGGTGCCCCACGCCTGACGGATGAACTGCGTGCTCAGGGTTACCCCTTTAACGTAAAAACCGTGGCGGCAAG                                                                                                                                                   >  2:347706/1‑143
ACGCGTCAGCAGTTCCGCCAACACTGCGACAGCGTTGTCCTCGCGCCTTTTACCCGGTCAAAACAGCGTTACGGTGCCCCACGCCTGCCGGATGAACTGCGTGCTCAGGGTTACCCCTTTAACGTAACCACCGTGGCGGCAAG                                                                                                                                                   >  1:213156/1‑143
ACGCGGCAGCAGTTCCGCCAACACTGCGACAGCGTTGTCCTCGCGGCTTTTACCCGGTCAAAACAGCGTTACGGTGCCCCACGCCTGACGGATGAACTGCGTGCTCAGGGTTACCCCTTTAACGTAAAAACCGTGGCGGCAAG                                                                                                                                                   <  1:611341/143‑1
 CGCGTCCGCAGTTCCGCCAACACTGCGACAGCGTTGTCCTCGCGGCTTTTACTCGGTCAAAACAGCGTTACGGTGCCCCACGCCTGACGGATGAACTGCGTGCTCAGCGTTACCCCTTTAACGTCAAACCCGTGGCGGCCAGC                                                                                                                                                  >  1:106656/1‑143
 CGCGTCCGCAGTGCCGCCAACACTGCGACAGCGTTGTCCTCGCGGCTTTTACCCGGTCAAAACAGCGTTACGGTGCCCCACGCCCGACGGATGAACTGCGTGCTCAGGGTTACCCCTTTAACGTAAAAACCGTGGCGGCAAGC                                                                                                                                                  <  1:367158/143‑1
 CGCGTCAGCAGTTCCGCCAACACTGCGACAGCGTTGTCCTCGCGGCTTTTACCCGGTCAAAACAGCGTTACGGTGCCCCACGCCTGACGGATGAACTGCGTGCTCAGGGTTACCCCTTTAACGTAAAAACCGTGGCGGCAAGC                                                                                                                                                  >  1:379185/1‑143
 CGCGTCAGCAGTTCCGCCAACACTGCGACAGCGTTGTCCTCGCGGCTTTTACCCGGTCAAAACAGCGTTACGGTGCCCCACGCCTGACGGATGAACTGCGTGCTCAGGGTTACCCCTTTAACGTAAAAACCGTGGCGGCAAGC                                                                                                                                                  <  1:625797/143‑1
 CGCGTCAGCAGTTCCGCCAACACTGCGACAGCGTTGTCCTCGCGGCTTTTACCCGGTCAAAACAGCGTTACGGTGCCCCACGCCTGACGGATGAACTGCGTGCTCAGGGTTACCCCTTTAACGTAAAAACCGTGGCGGCAAGC                                                                                                                                                  <  1:298248/143‑1
 CGCGTCAGCAGTTCCGCCAACACTGCGACAGCGTTGTCCTCGCGGCTTTTACCCGGTCAAAACAGCGTTACGGTGCCCCACGCCTGACGGATGAACTGCGTGCTCAGGGTTACCCCTTTAACGTAAAAACCGTGGCGGCAAGC                                                                                                                                                  <  1:333418/143‑1
 CGCGCCAGCAGTTCCGCCAACACTGCGACAGCGTTGTCCACGCGGCTTTTACCTGGTCAAAACAGCGTTACGGTGCCCCACGCCTGACGGATTAACTGCGTGCTCAGGGTTACCCCTTTAACGTAAAAACCGTGGCGGCAAGC                                                                                                                                                  <  1:244355/143‑1
  GCGTCAGCAGTTCCGCCAACACTGCGACAGCGTTGTCCTCGCGGCTTTTACCCGGTCAAAACAGCGTTACGGTGCCCCACGCCTGACGGTTGAACTGCGTGCTCAGGCTTACCCCTTTAACGTAAATCCCGTGGCGGCAAGCC                                                                                                                                                 >  1:10947/1‑143
  GCGTCAGCAGTTCCGCCAACACTGCGACAGCGTTGTCCTCGCGGCTTTTACCCGGTCAAAACAGCGTTACGGTGCCCCACGCCTGACGGATGACCTGCGGGCTCACGGTTACCCCTGTGACGTAAAAACCGTGGCGGCACGCC                                                                                                                                                 >  1:33648/1‑143
  GCGTCAGCAGTTCCGCCAACACTGCGACAGCGTTGTCCTCGCGGCTTTTACCCGGTCAAAACAGCGTTACGGTGCCCCACGCCTGACGGATGAACTGCGTGCTCAGGGTTACGCCTTGAACGTAAAAACCGGGGCGGCGAGCC                                                                                                                                                 >  1:98349/1‑143
  GCGTCAGCAGTTCCGCCAACACTGCGACAGCGTTGTCCTCGCGGCTTTTACCCGGTCAAAACAGCGTTACGGTGCCCCACGCCTGACGGATGAACTGCGTGCTCAGGGTTACCCCTTTAACGTAAAAACCGTGGCGGCAAGCg                                                                                                                                                 >  1:26056/1‑142
  GCGTCAGCAGTTCCGCCAACACTGCGACAGCGTTGTCCTCGCGGCTTTTACCCGGTCAAAACAGCGTTACGGTGCCCCACGCCTGACGGATGAACTGCGTGCTCAGGGTTACCCCTTTAACGTAAAAACCGTGGCGGCAAGCC                                                                                                                                                 >  2:100149/1‑143
  GCGTCAGCAGTTCCGCCAACACTGCGACAGCGTTGTCCTCGCGGCTTTTACCCGGTCAAAACAGCGTTACGGTGCCCCACGCCTGACGGATGAACTGCGTGCTCAGGGTTACCCCTTTAACGTAAAAACCGTGGCGGCAAGCC                                                                                                                                                 >  1:357480/1‑143
  GCGTCAGCAGTTCCGCCAACACTGCGACAGCGTTGTCCTCGCGGCTTTTACCCGGTCAAAACAGCGTTACGGTGCCCCACGCCTGACGGATGAACTGCGTGCTCAGGGTTACCCCTTTAACGTAAAAACCGTGGCGGCAAGCC                                                                                                                                                 >  1:461023/1‑143
  GCGTCAGCAGTTCCGCCAACACTGCGACAGCGTTGTCCTCGCGGCTTTTACCCGGTCAAAACAGCGTTACGGTGCCCCACGCCTGACGGATGAACTGCGTGCTCAGGGTTACCCCTTTAACGTAAAAACCGTGGCGGCAAGCC                                                                                                                                                 <  2:333984/143‑1
  GCGTCAGCAGTTCCGCCAACACTGCGACAGCGTTGTCCTCGCGGCTCTTACCCGGTCAAAACAGCGTTACGGTGCCCCACGCCTGACGGATGAACTGCCTGCTCAGGGTTGCACCTTTCACCTCAACACCGCGGCGGCAAGCg                                                                                                                                                 >  2:650613/1‑142
   CGTCAGGGGTTCGGCCAATGCTGCGACGGCGTTGTCCTCGCGGCTGTTACCCGGTCAAAACAGCGTTACGGTGCCCCACGCCTGACGGATGAACTGCGTGCTCAGGGTTACCCCTTTAACGTAAAAACCGTGGCGGCAAGCCT                                                                                                                                                <  2:210795/143‑1
   CGTCAGCAGTTCCGCCAACACTGCGACAGCGTTGTCCTCGCGGCTTTTACCCGGTCAAAACAGCGTTACGGTGCCCCACGCCTGACGGATGAACTGCGTGCTCAGGGTTACCCCTTTAACGTAAAAACCGTGGCGGCAAGCCT                                                                                                                                                >  1:455936/1‑143
   CGTCAGCAGTTCCGCCAACACTGCGACAGCGTTGTCCTCGCGGCTTTTACCCGGTCAAAACAGCGTTACGGTGCCCCACGCCTGACGGATGAACTGCGTGCTCAGGGTTACCCCTTTAACGTAAAAACCGTGGCGGCAAGCCT                                                                                                                                                >  1:63058/1‑143
   CGTCAGCAGTTCCGCCAACACTGCGACAGCGTTGTCCTCGCGGCTTTTACCCGGTCAAAACAGCGTTACGGTGCCCCACGCCTGACGGATGAACTGCGTGCTCAGGGCTACCCCTTTAACGTAAAAACCGTGGCGGCAAGCCT                                                                                                                                                >  2:303016/1‑143
   CGTCAGCAGTGCCGCCAACACTGCGACAGCGTTGGCCTCGCGGCTTTTACCCGGTCAAAACAGCGTTACGGTGCCCCACGCCTGACGGATGAACTGCGTGCTCAGGGTTACCCCTTTAACGTAAAAACCGTGGCGGCAAGCCT                                                                                                                                                <  2:144414/143‑1
     TCAGCAGTTCCGCCAACACTGCGACAGCGTTGTCCTCGCGGCTTTTACCCGGTCAAAACAGCGTTGCGGTGCCCCGCGCCTGACGGATGAACTGCGTGCGCAGGGTTACCCCTTTAACGTAACAAGCGTGGCGGCAAGCatcc                                                                                                                                              >  2:26125/1‑139
      CAGCAGTTCCGCCAACACTGCGACAGCGTTGTCCTCGCGGCTTTTACCCGGTCAAAACAGCGTTACGGTGCCCCACGCCTGACGGATGAACTGCGTGCTCAGGGTTACCCCTTTAACGTAAAAACCGTGGCGGCAAGCCcgcg                                                                                                                                             >  1:541096/1‑139
        GCAGTTCCGCCAACACTGCGACAGCGTTGTCCTCGCGGCTTTTACCCGGTCAAAACAGCGTTACGGTGCCCCACGCCTGACGGATGAACTGCGTGCTCAGGGTTACCCCTTTAACGTAAAAACCCTGGCCGCACGCCggcccc                                                                                                                                           >  2:332011/1‑137
                          CGACAGCGTTGTCCTCGCGGCTTTTACCCGGTCAAAACAGCGTTACGGTGCCCCACGCCTGACGGATGAACTGCGTGCTCAGGGTTACCCCTTTAACGTAAAAACCGTGGCGGCAAGCCTGCGCCCTCAGTCCCTGACGGCGC                                                                                                                         <  2:520564/143‑1
                           gcCAGCGTTGTCCCCGCGGCTTTTACCCGGTCAAAACAGCGTTACGGTGCCCCACGCCTGACGGATGAACTGCGTGCTCAGGGTTACCCCTTTAACGTAAAAACCGTGGCGGCAAGCCTGCGCCCTCAGTCCCTGACGGCGCA                                                                                                                        <  2:546813/141‑1
                           cACAGTGTTGTCATCGCGGCTTTTACCCGGTCAAAACAGCGTTACGGTGCCCCACGCCTGACGGATGAACTGCGTGCTCAGGGTTACCCCTTTAACGTAAAAACCGTGGCGGCAAGCCTTTGCCCTCAGTCCCTGACGACGCA                                                                                                                        <  2:66215/142‑1
                           GACAGCGTTGTCCTCGCGGCTTTTACCCGGTCAAAACAGCGTTACGGTGCCCCACGCCTGACGGATGAACTGCGTGCTCAGGGTTACCCCTTTAACGTAAAAACCGTGGCGGCAAGCCTTTGCCCTCAGTCCCTGACGGCGCA                                                                                                                        <  1:44570/143‑1
                           GACAGCGTTGTCCTCGCGGCTTTTACCCGGTCAAAACAGCGTTACGGTGCCCCACGCCTGACGGATGAACTGCGTGCTCAGGGTTACCCCTTTAACGTAAAAACCGTGGCGGCAAGCCTGCGCCCTCAGTCCCTGACGGCGCA                                                                                                                        <  1:640850/143‑1
                           GACAGCGTTGTCCTCGCGGCTTTTACCCGGTCAAAACAGCGTTACGGTGCCCCACGCCTGACGGATGAACTGCGTGCTCAGGGTTACCCCTTTAACGTAAAAACCGTGGCGGCAAGCCTGCGCCCTCAGTCCCTGACGGCGCA                                                                                                                        <  2:31525/143‑1
                           GACAGCGTTGTCCTCGCGGCTTTTACCCGGTCAAAACAGCGTTACGGTGCCCCACGCCTGACGGATGAACTGCGTGCTCAGGGGTACCCCTTTAACGTAAAAACCGTGGCGGCAAGCCTTTGCCCTCAGTCCCTGACGGCGCA                                                                                                                        <  2:381150/143‑1
                           GACAGCGTGGTCCTCGCGGCTTTTACCCGGTCAAAACAGCGTTACGGTGCCCCACGCCTGACGGATGAACTGCGTGCTCAGGGTTACCCCTTTAACGTAAAAACCGTGGCGGCAAGCCTGCGCCCTCAGTCCCTGACGGCGCA                                                                                                                        <  2:333042/143‑1
                            accGCGTTGTCCTCGCGGCTGTTACCCGGTCAAAACAGCGTTACGGTGCCCCACGCCTGACGGATGAACTGCGTGCTCAGGGGTACCCCTTTAACGTATAAACCGTGGCGGCAAGCCTGCGCCCTCAGTCCCTGACGGCGCAG                                                                                                                       <  2:527064/140‑1
                            ACAGCGTTGTCCTCGCGGCTTTTACCCGGTCAAAACAGCGTTACGGTGCCCCACGCCTGACGGATGAACTGCGTGCTCAGGGTTACCCCTTTAACGTAAAAACCGTGGCGGCAAGCCTTTGCCCTCAGTCCCTGACGGCGCAG                                                                                                                       <  1:316859/143‑1
                            ACAGCGTTGTCCTCGCGGCTTTTACCCGGTCAAAACAGCGTTACGGTGCCCCACGCCTGACGGATGAACTGCGTGCTCAGGGTTACCCCTTTAACGTAAAAACCGTGGCGGCAAGCCTGCGCCCTCAGTCCCTGACGGCGCAG                                                                                                                       <  1:318452/143‑1
                            ACAGCGTGTTCCTCGCGGCTTTTACCCGGTCAAAACAGCGTTACGGTGCCCCACGCCTGACGGATGAACTGCTTGCTCAGGGTTACCCCTTTAACGTAAAAACCGTGGCGGCAAGCCTTTGCCCTCAGTCCCTGACGGCGCAG                                                                                                                       <  2:312542/143‑1
                            ACAGCGTCGTCCTCGCGGCTCTTACCCGGTCAAACCAGCGTCACGGGGCCCCACGCCTGACGGATGAACTGCGTGCGCAGGGTTACCCCTTTAACGTAAAAACCGTGGCGGCAAGCCTTTGCCCTCAGTCCCTGACGGCGCAG                                                                                                                       <  1:212907/143‑1
                             CAGCGTTGTCCTCGCGGCTTTTACCCGGTCAAAACAGCGTTACGGTGCCCCACGCCTGACGGATGAACTGCGTGCTCAGGGTTACCCCTTTAACGTAAAAACCGTGGCGGCAAGCCTTTGCCCTCAGTCCCTGACGGCGCAGG                                                                                                                      <  1:365448/143‑1
                                CGTTGTCCTCGCGGCTTTTACCCGGTCAAAACAGCGTTACGGTGCCCCACGCCTGACGGATGAACTGCGTGCTCAGGGTTACCCCTTTAACGTAAAAACCGTGGCGGCAAGCCTTTGCCCTCAGTCCCTGACGGCGCAGGCTT                                                                                                                   <  1:85210/143‑1
                                 GTTGTCCTCGCGGCTTTTACCCGGTCAAAACAGCGTTACGGTGCCCCACGCCTGACGGATGAACTGCGTGCTCAGGGTTACCCCTTTAACGTAAAAACCGTGGCGGCAAGCCTTTGCCCTCAGTCCCTGACGGCGCAGGCTTG                                                                                                                  <  1:581898/143‑1
                                    GTCCTCGCGGCTTTTACCCGGTCAAAACAGCGTTACGGTGCCCCACGCCTGACGGATGAACTGCGTGCTCAGGGTTACCCCTTTAACGTAAAAACCGTGGCGGCAAGCCTTTGCCCTCAGTCCCTGACGGCGCAGGCTTGCCG                                                                                                               <  1:76934/143‑1
                                          GCGGCTTTTACCCGGTCAAAACAGCGTTACGGTGCCCCACGCCTGACGGATGAACTGCGTGCTCAGGGTTACCCCTTTAACGTAAAAACCGTGGCGGCAAGCCTCTGCCCTCAGTCCCTGACGGCGCAGGCTTGCCGCCACGG                                                                                                         <  1:290962/143‑1
                                                                                                                                        cggggtGCCTTCGCCCTCAGTCGCTGACGGCGCAGGCTTGCCGCCACGGTTTTTACCAAAAAGGGGGACCTCTGAGCACGCAGTTCATCCGTCAGGCGTGGGGCACCGTAACGCTGTTTTGACCGGGTAAAAGCCGCGAGGAC           <  2:229947/137‑1
                                                                                                                                           tatGCCTTTGCTCTTAGTTCCTGACGGCGCAGGCTTGCCGCCACGGTTTTAACGTGGCAGGGGTACGCTTGAGCACGCAGTTCATCCGTCAGGCGTGGGGCACCGTAACGCTGTTTTGACCGGGTAAAAGCCGCGAGGACAAC        <  1:24327/140‑1
                                                                                                                                           gagtCCTTTGGCCTCAGTCCCTGACGGCGCAGGCTTGCCGCCACGGTTTTTACGTTAAGGGGGTAACCCTGAGCACGCATTTCATCCGTCAGGCGTGGGGCACCGTAACGCTGTTTTGACCGGCTTAAAGCCTCGAGGACAAC        <  2:203122/139‑1
                                                                                                                                            cgcCCTTTGCCCTCAGTCCCTGACGGCGCAGCCTTGCCGCCACGTTTTTTACGTTAAAGGGGTAACCCTGAGCACGCAGTTCATCCGTCAGGCGTGCGGCACCGTAACGCTGTTTTGACCGGGTAAAAGCCGCGAGGACAACG       <  2:237178/140‑1
                                                                                                                                              GCCTTTGCCCTCAGTCCCTGACGGCGCAGGCTTGCCGCCACGGTTTTTACGTTAAAGGGGTAACCCTGAGCACGCAGTTCATCCGTCAGGCGTGGGGCACCGTAACGCTGTTTTGACCGGGTAAAAGCCGCGAGGACAACGCT     <  2:98193/143‑1
                                                                                                                                              GCCTTTGCCCTCAGTCCCTGACGGCGCAGGCTTGCCGCCACGGTTTTTACGTTAAAGGGGTAACCCTGAGCACGCAGGTCATCCGTCAGGCGTGGGGCACCGTAACGCTGTTTTGACCGCGTAAAAGCCGCGAGGACAACGCT     >  2:157196/1‑143
                                                                                                                                              GCCTTTGCCCTCAGTCCCTGACGGCGCAGGCTTGCCGCCACGGTTGTTACGTTAAAGGGGTAACCCTGAGCACGCAGTTCATCCGTCAGGCGTGGGGCACCGTAACGCTGTTTTGACCGGGTAAAAGCCGCGAGGACAACGCT     <  2:515505/143‑1
                                                                                                                                              GCCTTTGCCCTCAGTCCCTGACGGCCCAGACTTGCCGCCACGGTTTTTACGTTAAAGGGGTAACCCTGAGCACCCAGTTCATCCGTCAGGCGTGGGGCACCGTAACGCTGTTTTGATCGAGTAAGAGCCGCGACGACAAgcgt     >  2:258047/1‑139
                                                                                                                                               CCTTTGCCCTCAGTCCCTGACGGCGCAGGCTTGCCGCCACGGTTTTTCCGTTAAAGGGGTAACCCTGAGCACGCAGTTCATCCGTCAGGCGTGGGGCACCGTAACGCTGTTTTGACCGGGTAAAAGCCGCGAGGACAACGCTG    >  2:204414/1‑143
                                                                                                                                               CCTTTGCCCTCAGTCCCTGACGGCGCAGGCTTGCCGCCACGGTTTTTACGTTAAAGGGGTAACCCTGAGCACGCAGTTCATCCGTCAGGCGTGGGGCACCGTAACGCTGTTTTGACCGGGTAAAAGCCGCGAGGACAACGCTG    <  1:267754/143‑1
                                                                                                                                               CCTTTGCCCTCAGTCCCTGACGGCGCAGGCTTGCCGCCACGGTTTTTACGTTAAAGGGGTAACCCTGAGCACGCAGTTCATCCGTCAGGCGTGGGGCACCGTAACGCTGTTTTGACCGGGTAAAAGCCGCGAGGACAACGCTG    <  1:464014/143‑1
                                                                                                                                                CTTTGCCCTCAGTCCCTGACGGCGCAGGCTTGCCGCCACGGTTTTTACGTTAAAGGGGTAACCCTGAGCACGCAGTTCATGCGTCAGGCGTGGGGCACCGTAAGGCTGTTTTGACCCGGTAAAATCCGCGAGGACAcaactgt   >  1:329766/1‑136
                                                                                                                                                CTTTGCCCTCAGTCCCTGACGGCGCAGGCTTGCCGCCACGGTTTTTACGTTAAAGGGGTAACCCTGAGCACGCAGTTCATCCGTCAGGCGTGGGGCACCGTACCGCTGTTTTCACCGGGTAAAAGCCGCGAGGACAACGCTGT   >  1:370514/1‑143
                                                                                                                                                CTTTGCCCTCAGTCCCTGACGGCGCAGGCTTGCCGCCACGGTTTTTACGTTAAAGGGGTAACCCTGAGCACGCAGTTCATCCGTCAGGCGTGGGGCACCGTAACGCTGTTTTGACCGGGTAACAGCCGCGAGGACAACGCTGT   >  2:318734/1‑143
                                                                                                                                                CTTTGCCCTCAGTCCCTGACGGCGCAGGCTTGCCGCCACGGTTTTTACGTTAAAGGGGTAACCCTGAGCACGCAGTTCATCCGTCAGGCGTGGGGCACCGTAACGCTGTTTTGACCGGGTAAAAGCCGCGCGGACAACGCTGT   >  1:49983/1‑143
                                                                                                                                                CTTTGCCCTCAGTCCCTGACGGCGCAGGCTTGCCGCCACGGTTTTTACGTTAAAGGGGTAACCCTGAGCACGCAGTTCATCCGTCAGGCGTGGGGCACCGTAACGCTGTTTTGACCGGGTAAAAGCCGCGAGGACCACGCTGT   >  1:116072/1‑143
                                                                                                                                                CTTTGCCCTCAGTCCCTGACGGCGCAGGCTTGCCGCCACGGTTTTTACGTTAAAGGGGTAACCCTGAGCACGCAGTTCATCCGTCAGGCGTGGGGCACCGTAACGCTGTTTTGACCGGGTAAAAGCCGCGAGGACAACGCTGT   >  2:276355/1‑143
                                                                                                                                                CTTTGCCCTCAGTCCCTGACGGCGCAGGCTTGCCGCCACGGTTTTTACGTTAAAGGGGTAACCCTGAGCACGCAGTTCATCCGTCAGGCGTGGGGCACCGTAACGCTGTTTTGACCGGGTAAAAGCCGCGAGGACAACGCTGT   >  1:422563/1‑143
                                                                                                                                                CTTTGCCCTCAGTCCCTGACGGCGCAGGCTTGCCGCCACGGTTTTTACGTTAAAGGGGTAACCCTGAGCACGCAGTTCATCCGTCAGGCGTGGGGCACCGTAACGCTGTTTTGACCGGGTAAAAGCCGCGAGGACAACGCTGT   >  1:487412/1‑143
                                                                                                                                                CTTTGCCCTCAGTCCCTGACGGCGCAGGCTTGCCGCCACGGTTTTTACGTTAAAGGGGTAACCCTGAGCACGCAGTTCATCCGTCAGGCGTGGGGCACCGTAACGCTGTTTTGACCGGGTAAAAGCCGCGAGGACAACGCTGT   >  2:225404/1‑143
                                                                                                                                                CTTTGCCCTCAGTCCCTGACGGCGCAGGCTTGCCGCCACGGTTTTTACGTTAAAGGGGTAACCCTGAGCACGCAGTTCATCCGTCAGGCGTGGGGCACCGTAACGCTGTTTTGACCGGGTAAAAGCCGCGAAGACAACGCTGT   <  1:534131/143‑1
                                                                                                                                                CTTTGCCCTCAGTCCCTGACGGCGCAGGCTTGCCGCCACGGTTTTTACGTTAAAGGGGTAACCCTGAGCACGCAGTTCATCCGTCAGGCGTGGGGCACCGTAACGCTGTTTTGACCGGGGAAAAGCCGCGAGGACGACGCTGT   >  1:517862/1‑143
                                                                                                                                                CTTTGCCCTCAGTCCCTGACGGCGCAGGCTTGCCGCCACGGTTTTTACGTTAAAGGGGTAACCCTGAGCACGCAGTTCATCCGTCAGGCGTGGGGCACCGTAACGCGGTTTTGACCGGGTAAAAGCCGCGAGGACAACGCTGT   >  1:568136/1‑143
                                                                                                                                                CTTTGCCCTCAGTCCCTGACGGCGCAGGCTTGCCGCCACGGTTTTTACGCTAAAGGGGTAACCCTGAGCACGCAGTTCATCCGTCAGGCGTGGGGCACCGTAACGCTGTTTTGACCGCGTAAAAGACGCGACAACACCGCTac   >  2:468177/1‑141
                                                                                                                                                CTTTGCCCTCAGTCACTGACGGCGCAGGCTTGCCGCCACGGTTTTTACGTTAAAGGGGTAACCCTGAGCACGCAGATCATCCGACAGGCGTGGGGCACCGTAACGCTGAATTAACAAGGTAAAAGCCGCGCGGACAACacaga   >  2:524354/1‑138
                                                                                                                                                CTTTGCCCCCAGTCCCTGACGGCGCAGGCTTGCCGCCACGGTTTTTACGTTAAAGGGGTAACCCTGAGCACGCAGTTCAGCCGTCAGGCGTGCGGCACCGTAACGCTGTTTTGACCGGGTAAAAGCCGCGAGGACAACGCTGT   <  2:595081/143‑1
                                                                                                                                                 TTTGCCCTCGGTGCCTGACGGCGCAGGCTGGCCGCGACGGTTTTTACGTTAAAGGGGTAACCCTGAGCACGCAGTTCATCCGTCAGGCGTGGGGCACCGTAACGCTGTTTTGACCGGGTAAAAGCCGCGAGGACAACGCTGTC  <  2:287250/143‑1
                                                                                                                                                 TTTGCCCTCAGTCCCTGACGGCGCAGGCTTGCCGCCGCGGTTTTTACGTTAGAGGGGTAACCCTGAGCACGCAGTTCATCCGTCAGGCGTGGGGCACCGTAACGCTGTTTTGACCGGGTAAAAGCCGCGAGGACAACGCTGTC  <  2:88870/143‑1
                                                                                                                                                 TTTGCCCTCAGTCCCTGACGGCGCAGGCTTGCCGCCACGGTTTTTACGTTAAAGGGGTAACGCTGAGCACGCAGTTCATCCGTCAGGCGTGGGGCACCGTAACGCCGCTTCGATCGGGTAAAAGCCGCGCGGACAACGCAGTC  >  2:635070/1‑143
                                                                                                                                                 TTTGCCCTCAGTCCCTGACGGCGCAGGCTTGCCGCCACGGTTTTTACGTTAAAGGGGTAACCCTGAGCACGCCGTTCATCCGTCAGGCGTGGGGCACCGTAACGCTGTTTTGACCGGGTAAAAGCCGCGAGGCCAACGCTGTC  >  2:122496/1‑143
                                                                                                                                                 TTTGCCCTCAGTCCCTGACGGCGCAGGCTTGCCGCCACGGTTTTTACGTTAAAGGGGTAACCCTGAGCACGCAGTTCATCCGTCAGGCGTGGGGCACCGTACCGCTGTTTTGACCGGGTAAAAGCCGCGGGGCCAACGCTGTC  >  2:634064/1‑143
                                                                                                                                                 TTTGCCCTCAGTCCCTGACGGCGCAGGCTTGCCGCCACGGTTTTTACGTTAAAGGGGTAACCCTGAGCACGCAGTTCATCCGTCAGGCGTGGGGCACCGTAACGCTGTTTTGACCGGGTAAGAGCCGCGAGGACAACGCTGTC  >  1:488144/1‑143
                                                                                                                                                 TTTGCCCTCAGTCCCTGACGGCGCAGGCTTGCCGCCACGGTTTTTACGTTAAAGGGGTAACCCTGAGCACGCAGTTCATCCGTCAGGCGTGGGGCACCGTAACGCTGTTTTGACCGGGTAAAAGCCGCGAGGACAAGGCTGTC  >  1:282460/1‑143
                                                                                                                                                 TTTGCCCTCAGTCCCTGACGGCGCAGGCTTGCCGCCACGGTTTTTACGTTAAAGGGGTAACCCTGAGCACGCAGTTCATCCGTCAGGCGTGGGGCACCGTAACGCTGTTTTGACCGGGTAAAAGCCGCGAGGACAACGCTGTC  <  1:143629/143‑1
                                                                                                                                                 TTTGCCCTCAGTCCCTGACGGCGCAGGCTTGCCGCCACGGTTTTTACGTTAAAGGGGTAACCCTGAGCACGCAGTTCATCCGTCAGGCGTGGGGCACCGTAACGCTGTTTTGACCGGGTAAAAGCCGCGAGGACAACGCTGTC  >  1:174809/1‑143
                                                                                                                                                 TTTGCCCTCAGTCCCTGACGGCGCAGGCTTGCCGCCACGGTTTTTACGTTAAAGGGGTAACCCTGAGCACGCAGTTCATCCGTCAGGCGTGGGGCACCGTAACGCTGTTTTGACCGGGTAAAAGCCGCGAGGACAACGCTGTC  >  1:227938/1‑143
                                                                                                                                                 TTTGCCCTCAGTCCCTGACGGCGCAGGCTTGCCGCCACGGTTTTTACGTTAAAGGGGTAACCCTGAGCACGCAGTTCATCCGTCAGGCGTGGGGCACCGTAACGCTGTTTTGACCGGGTAAAAGCCGAGAGGACGACGCTGTC  >  1:227991/1‑143
                                                                                                                                                 TTTGCCCTCAGTCCCTGACGGCGCAGGCTTGCCGCCACGGTTTTTACGTTAAAGGGGTAACCCTGAGCACGCAGTTCATCCGTCAGGCGTGGGGCACCGTAACGCTGTTTTGACCGGGGAAAAGCCGCGAGGACAACGCTGTC  >  2:285213/1‑143
                                                                                                                                                 TTTGCCCTCAGTCCCTGACGGCGCAGGCTTGCCGCCACGGTTTTTACGTTAAAGGGGTAACCCTGAGCACGCAGTTCATCCGTCAGGCGTGGGGCACCGTAACGCTGTCTTGACCGGGTAAAAGCCGCGGGGACAACGCTGTC  >  2:273639/1‑143
                                                                                                                                                 TTTGCCCTCAGTCCCTGACGGCGCAGGCTTGCCGCCACGGTTTTTACGTTAAAGGGGTAACCCTGAGCACGCAGTTCATCCGGCAGGCGTGGGGCACCGTAACGCTGTTTTGACCGGGTAAAAGCCGCGAGGACAACGCTGTC  <  1:28898/143‑1
                                                                                                                                                 TTTGCCCTCAGTCCCTGACGGCGCAGGCTTGCCGCCACGGTTTTTACGTTAAAGGGGTAACCCTGAGCACGCAGTTCATCCGCCAGGCGTGGGGCACCGTAACGCGACTTTGACAGCGTACACGCCGCGAGCACAACGCTGTC  >  2:117858/1‑143
                                                                                                                                                 TTTGCCCTCAGTCCCTGACGGCGCAGGCTTGCCGCCACGGTTTTTACGTTAAAGGGGTAACCCTGAGCAAGCAGTTCATCCGTCAGGCGTGGGGCACCGTAACGCTGTTGTGACCGGGTAAAAGCCGCCAGGACAACGCTGTa  >  2:412095/1‑142
                                                                                                                                                 TTTGCCCTCAGTCCCTGACGGCGCAGGCTTGCCGCCACGGTTTTTACGTTAAAGGGGTAACCATGAGCACGCAGTTCATCCGTCAGGCGTGGCGCACCGTAACGCTGTTCTGACCGGGTCAAAGCCGCGAGGACAACGCGGTC  >  2:311470/1‑143
                                                                                                                                                 TTTGCCCTCAGTCCCTGACGGCGCAGGCTTGCCGCCACGGCTTTTACGTTAAAGGGGTAACCTTGAGCACGCAGTTCATCCGTCAGGCGTGGGGCCCCGCAACGCTGTTGAGACCGGGTAGAAGCCGCGGGGAAAACGCTGTg  >  2:39403/1‑142
                                                                                                                                                 TTTGCCCTCAGTCCCTGACGGCGCAGGCTTGCCGCCACGGCTTTTACGTTAAAGGGGTAACCCTGAGCACGCAGGTCATCCGTCAGGCGTGGGGCACCGTAACGCTGTTTTGACCGGGTAAAAGCCGCGAGGACAACGCTGTC  >  1:422675/1‑143
                                                                                                                                                 TTTGCCCTCAGTCCCTGACGGCGCAGGCCTGCCTGCACGACACATAGGTGAAAGCGGTAACCCTCAGCCCGCAGTTCATCCGTCAGGCGTGGGGCACCGTAACGCTGTTTTGACCGGGTAAAAGCCGCGAGGACAACGCTGTC  >  1:451712/1‑143
                                                                                                                                                 TTTGCCCTCAGTCCCTGACGGCGCAGACTTGCCGCCACGATTTTTACGTCAAAGGAGTAACCCTGAGCACGCAGTTCATCCGTCAGGCGTGGGGCACCGTAACGCTGTTTTGACCGGGTAAAAGCCGCGAGGACAACGCTGTC  >  2:360970/1‑143
                                                                                                                                                 TTTGCCCTCAGTCCCTGACGACGCAGGCTTGCCGCCACGGTTTTTACGTTAAAGAGGTAACCCTGAGCACGCAGTTCATCCGTCAGACGTGGGGGACCGTAGCGCTGTTTTGACCGGGTCAAACCCGCAAGGACAACGCTGTg  >  2:216369/1‑142
                                                                                                                                                 TTTGCCCCCAGTCCCGGACGGCGCAGGCTTGCCGCCACGGTTTTTACGTTAAAGGGGTAACCCTGAGCACGCAGTTCATCCGTCAGGCGTGGGGCACCGTAACGCTGTTTTGACCGGGTAAAAGCCGCGAGGACAACGCTGTC  <  1:266993/143‑1
                                                                                                                                                                                                                                                                                                
ACGCGTCAGCAGTTCCGCCAACACTGCGACAGCGTTGTCCTCGCGGCTTTTACCCGGTCAAAACAGCGTTACGGTGCCCCACGCCTGACGGATGAACTGCGTGCTCAGGGTTACCCCTTTAACGTAAAAACCGTGGCGGCAAGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/315707‑315852
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctTTGCCCTCAGTCCCTGACGGCGCAGGCTTGCCGCCACGGTTTTTACGTTAAAGGGGTAACCCTGAGCACGCAGTTCATCCGTCAGGCGTGGGGCACCGTAACGCTGTTTTGACCGGGTAAAAGCCGCGAGGACAACGCTGTC  <  NC_000913/315875‑315734

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.