New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	566777 =	NA (NA)	1463 (44.410)	251/262	NT	98.3%	noncoding (1/1258 nt)	IS3	repeat region
	?	NC_000913	= 572471	25 (0.750)					coding (6/456 nt)	ybcN	DLP12 prophage; DNA base‑flipping protein

GAAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT‑GAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCC  >  NC_000913/566636‑566910                                                                                                                                              |                                                                                                                                       gAAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACCGGCGCAACCGTAATCtc                                                                                                                                       >  1:200488/1‑142 (MQ=255)    gATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATc                                                                                                                                    <  2:575486/143‑1 (MQ=255)    gATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATc                                                                                                                                    <  1:398529/143‑1 (MQ=255)              aTTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCa                                                                                                                          >  2:338087/1‑143 (MQ=255)               ttAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTCCCCAGCaa                                                                                                                         >  1:644564/1‑143 (MQ=255)                     cTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGCCGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTgg                                                                                                                   >  1:640579/1‑143 (MQ=255)                         gTTCGGACTGAAAGGAGCAAGTGTATGACGGGGAAAGAGGCAATTATTCATTACCTGGGGACGCATGAGGGGTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGGAATCTGATCTTACCCAGCAATAGTGGacac                                                                                                               >  2:414762/1‑143 (MQ=255)                          ttCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACCGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAGTAGTGGACAcg                                                                                                              >  1:202107/1‑143 (MQ=255)                            cGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTATTCACAGAAGGTTGCCGCGGTAACAGGCGCAACCGTAATATACTCTTCCCCACCAATAGTGCACAcgcc                                                                                                            >  2:28535/1‑142 (MQ=255)                             ggACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCCGGGGACGCATAAGAGCTTCTGCGCACAGGACGTTGCAGCGGTAACAGGCGCAACCGTAATCTGCTCTTACCCAGCAATAGTGGACACGCgg                                                                                                           >  2:416441/1‑143 (MQ=255)                                  gAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTACCAGGCGCAACGGTAATGTGATCTTACCCAGCAAGAGTGGACACGCGGCTAAg                                                                                                      >  1:31408/1‑143 (MQ=255)                                   aaaGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGt                                                                                                     >  2:541930/1‑143 (MQ=255)                                    aaGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCGATAGTGGACACGCGGCGAAGT‑g                                                                                                   >  1:361343/1‑143 (MQ=255)                                     aGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT‑Ga                                                                                                  <  2:53136/143‑1 (MQ=255)                                       gAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCACTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTCATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT‑GAGt                                                                                                <  2:79455/143‑1 (MQ=255)                                          ccaGTGTACGACGTACATAGAGGCAATTATCCATCACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCGGCGGTAACAGGCGCAACAGAAATCTGATCTTACCCAGCAATAGTGAACACGCGGCTAAGT‑GAGTaaa                                                                                             <  2:221665/141‑1 (MQ=37)                                                  tGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT‑GAGTAAACTCtcact                                                                                     >  2:380486/1‑141 (MQ=255)                                                      gtgCAGAGCGGCAAGTATTCATTGCCTGGGGACGCATAAGGGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTATGCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT‑GAGTAAACTCTCAGTCaga                                                                                 <  2:510431/141‑1 (MQ=25)                                                       ggCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACACAGCAGTAGTGGACACGCGGCTAAGT‑GAGTAAACTCTCAGTCagag                                                                                >  2:530303/1‑143 (MQ=255)                                                         cacagagGCAATTACTCATTCCCTGGGGCCGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT‑GAGTAAACTCTCAGTCAGAGGt                                                                              <  1:195588/140‑1 (MQ=255)                                                              agGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAAGACGTTGCAGCGATAACAGGCGCAACCGTCACCTGATCTTACCCAGCAATAGTGGAGACGCGGCTAAGT‑GAGTAAACTCTCAGTCCGAAGTGGCTc                                                                         >  1:57428/1‑143 (MQ=25)                                                                  aaTTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT‑GAGTAAACTCTCAGTCAGAGGAGACTCACAt                                                                     >  2:217685/1‑143 (MQ=255)                                                                    ttattCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT‑GAGTAAACTCTCAGTCAGAGGTGACTCACATGa                                                                   >  1:613426/1‑143 (MQ=255)                                                                           ttACCGGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGGAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT‑GAGTAAACTCTCAGGCAGAGGTGACTCACATGACAAAAAc                                                            <  1:162281/143‑1 (MQ=255)                                                                            tACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT‑GAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACa                                                           <  1:492991/143‑1 (MQ=255)                                                                                tGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTCCCCCGCAATAGTGGACACGCGGCGCAGT‑GAGTATACTCTCAGTCAGCGCTGACTCACCTGGCAAAACCAGTac                                                       >  1:224208/1‑142 (MQ=255)                                                                                       gCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAAGCGCAACCGTAATCTGATCTTACCCAGGAGTAGGGGACACGCGGATAAGT‑GAGTACACTCTCAGTCAGAGGTGACTAACATGAAAAAAACAGTATCAACCAg                                                >  2:216890/1‑143 (MQ=255)                                                                                              agCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT‑GAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTaaaaaa                                         <  2:47266/143‑1 (MQ=255)                                                                                                 ttCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT‑GAGTAAACTCTCAGTCAGAGGTGACTCCCATGACAAAAACAGCATCAAAAAGTAAAAAAccc                                      >  2:443768/1‑143 (MQ=255)                                                                                                 ttCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT‑GAGGAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAAccc                                      >  1:103948/1‑143 (MQ=255)                                                                                                   cTGTGCACAGGAGGTTGCCGCGGTAACAGGCGCAACCGCAATCGGAGCTTACCCGGCAATAGTCGACACGCGACACACACGTCTGAACT‑TCGGTCAGAGGCGGCTCACATGACAAGAGCTGTAGCAACGCGTACAAAACcgcg                                    >  1:303397/1‑143 (MQ=255)                                                                                                       gccaaGGACGTTGCGGCGGTAACAGGGGCAACCGTAAACTGATATTACCCGGCAATAGTGGACACGCGGCTAAGG‑GAGTACACCCGCAGTGAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTaaa                                <  2:139514/139‑1 (MQ=17)                                                                                                                  ctccGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT‑GAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGcc                     <  1:207125/141‑1 (MQ=255)                                                                                                                   gCCGCGATATCAGGCGCAACCGTAATCTGATCTAACCCAGCAATAGTGGACACTCGGATAAGT‑GAATAAACACTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCt                    <  2:360317/143‑1 (MQ=14)                                                                                                                      gcgGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAATGGACACGCGGCTAAGT‑TAGTAAACTCTCAGTCAGAGGCGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACACCGTAAACAGCATCCGCCAGaa                 >  2:434219/1‑143 (MQ=14)                                                                                                                          tAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT‑GAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGCATGTc             >  2:517517/1‑143 (MQ=255)                                                                                                                              aGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCGAAGT‑GAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTACCACACCCCGTAAACAGCATTCGCCTGAATGTCGCAg         >  2:134999/1‑143 (MQ=11)                                                                                                                                gcgcAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT‑GAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTg       >  1:563978/1‑143 (MQ=35)                                                                                                                                  gcAACCGTAATCTGATCTTACCCGGCAATAGTGGACACGCGGCTAAGT‑GAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGaa     <  2:31408/143‑1 (MQ=21)                                                                                                                                  gcAACCGTAATCTGATCTTACCAAGCAATAGTGGACACGCGCCTAAGT‑GAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAGTTTCGCAggaaa     >  2:409538/1‑139 (MQ=255)                                                                                                                                     aCCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT‑GAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAACCACCATCAACCAGTAAAAAACCACGTAAACAGCATGCGCCTGAACTGCGCAGTGAGGcc  >  2:569012/1‑143 (MQ=11)                                                                                                                                              |                                                                                                                                       GAAGATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGT‑GAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCC  >  NC_000913/566636‑566910

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.