| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1100121 = | 26 (0.780) | 4 (0.120) | 4/256 | NT | 14.5% | coding (482/555 nt) | ycdY | chaperone protein YcdY |
| ? | NC_000913 | 1100158 = | 22 (0.680) | coding (519/555 nt) | ycdY | chaperone protein YcdY | |||||
GCTCGCAGCTTCCTGGCTGGAAGATCAGTCAACGGAAGATGAGAGCGAAGCACTGGAAACACTGTTCAGTGAGTATCTGTTACCCTGGTGTGGTGCGTTCCTTGGCAAAGTGGAGGCCCATGCAACCACGCCTTTCTGGCGCACCA‑TGGCACCGCTAACCCGCGATGCCATTAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTGTTGTTGCATAAAATGTGTGCTCGATCTCAT > NC_000913/1099981‑1100263 | gatCGCAGCTTCCTGGCTGGAAGATCAGTCAACGGAACATGAGAGCGAACCACTGGAAACACTGTTCAGTGAGTATCTGTTACCCTGGTGTGGTGCGTTCCTTGGCAAAGTGGAGGCCCATGCAACCACGCCTTTCTGGCGCa < 2:434826/141‑1 (MQ=255) tgccgcgcatgacagcagaaaacgcggccatgaatgagatcgagcacacattttatgcaacaacaaattatccgttgcagttatgagtgacgtagatcacacttattcttcagaatcttcttccagctcgtcccacattGCAc > 1:42675‑M1/140‑143 (MQ=255) gCAGCTTCCTGGCTGGAAGATCAGTCAACGGAAGATGAGAGCGAAGCACTGGAAACACTGTTCAGTGAGTATCTGTTACCCTCGTGTGGTGCGTTCCTTGGCAAAGTGGAGGCCCATGCAACCACGCCTTTCTGGCGCACCac > 2:75591/1‑142 (MQ=255) tggAAGATCCGTCAACGGCAGATGCGAGCGAAGCACTGGAAACACTGTTCAGTGAGTATCTGTTACCCTGGTGTGGTGCGTTCCTTGGCAAAGTGGAGGCCCATGCAACCACGCCTTTCTGGCGCACCA‑TGGCACCGCTAAcc < 2:17915/143‑1 (MQ=255) tggAAGATCAGTCAACGGAAGATGAGAGCGAAGCACTGGAAACACTGTTCAGTGAGTATCTGTTACCCTGGTGTGGTGCGTTCCTTGGCACAGTGGAGGCCCGTGCAACCACGCCTTTCTGGCGCACCA‑TGGCCCCGCTAGcc > 1:53932/1‑143 (MQ=255) aaGATCAGTCAACGGAAGATGAGAGCGAAGCACTGGAAACACTGTTCAGTGAGTATCTGTTACCCTGGTGTGGTGCGTTCCTTGGCAAAGTGGAGGCCCATGCAACCACGCCTTTCTGGCGCACCA‑TGGCACCGCTAACCcgc < 1:108853/143‑1 (MQ=255) gTCAACGGAAGATGAGAGCGAAGCACTGGAAACACTGTTCAGTGAGTAGCTGTTACCCTGGTGTGGTGCGTTCCTTGGCAAAGTGGAGGCCCATGCAACCACGCCTTTCTGGTGCACCA‑TGGCACCGCTAACCCGCGATGCCa < 1:514401/143‑1 (MQ=255) cGGAAGGTGAGAGCGAAGCCATTGAGTCACTGTTCAGTGAGTATCTGTTACCCTGGTGTGGTGCGTTCCTTGGCAAAGTGGAGGCCCATGCAACCACGCCTTTCTGGCGCACCA‑TGGCACCGCTAACCCGCGATGCCATTAGt < 2:159209/143‑1 (MQ=255) aatgagatcgagcacacattttatgcaacaacaaattatccgttgcagttatgagtgacgtagatcacacttattcttcagaatcttcttccagctcgtcccacattGCACTAATGGCACCGCTAACCCGCGATGCCATTAGt > 2:25541‑M1/108‑143 (MQ=255) agagGAGAGCGAAGCACTGGAAACACTGTTCAGTGAGTATCTGTTACCCTGGTGTGGTGCGTTCCTTGGCAAAGTGGAGGCCCATGCAACCACGCCTTTCTGGCGCACCA‑TGGCACCGCTAACCCGCGATGCCATTAGTGCaa < 1:351945/143‑1 (MQ=255) ggatcgagcacacagtttatgcaacaacaaattatccgttgcagttatgagtgacgtagatcacacttattcttcagaatcttcttccagctcgtcccacattGCACCA‑TGGCACCGCTAACCCGCGATGCCATTAGTGCAAt > 2:85535‑M1/104‑143 (MQ=255) aggagaGCGAAGCACCGGAAACCCTGTTCAGTGAGTATCTGTTACCCTGGTGTGGTGCGTTCCTTGGCAAAGTGGAGGCCAATGCACCCACGCCTTTCTGGCGCACCA‑TGGCACCGCTAACCCGCGATGCCATTAGTGCAAtg < 1:337120/141‑1 (MQ=255) cgagcacacagtttatgcaacaacaaattatccgttgcagttatgagtgacgtagatcacacttattcttcagaatcttcttccagctcgtgccacattGCACTAATGGCACCGCTAACCCGCGATGCCATTAGTGCAAtgtg > 1:107838‑M1/100‑143 (MQ=255) agagCGAAGCACTGGAAACACTGTTCAGTGAGTATCTGTTACCCTGGTGTGGTGCGTTCCTTGGCAAAGTGGAGGCCCATGCAACCACGCCTTTCTGGCGCACCA‑TGGCACCGCTAACCCGCGATGCCATTAGTGCAATGTgg < 1:625458/143‑1 (MQ=255) agCGAAGCACTGGAAACACTGTTCAGTGAGTATCTGTTACCCTGGTGTGGTGCGTTCCTTGGCAAAGTGGAGGCCCATGCAACCACGCCTTTCTGGCGCACCA‑TGGCACCGCTAACCCGCGATGCCATTAGTCCACAGTgggc > 2:112239/1‑142 (MQ=255) gAAGCACTGGAAACACTGTTCAGTGAGTATCTGTTACCCTGGTGTGGTGCGTTCCTTGGCAAAGTGGAGGCCCATCCAACCACGCCTTTCTGGCGCACCA‑CGACACCGCTAACCCGCAAAGCCAAGAGTGCAATGGGGAACgc > 2:165919/1‑142 (MQ=255) aGCACTGGAAACACTGTTCAGTGAGTATCTGTTACCCTGGTGTGGTGCGTTCCCTGGCAAAGTGGAGGCCCATGCAACCACGCCTTTCTGGCGCACCA‑TGGCACCGCTAACCCGCGATGCCATTAGTGCAATGTGGGACGAGc < 1:180706/143‑1 (MQ=255) cctgtcatgcaacaacaaattatccgttgcagttatgagtgacgtagatcacacttattcttcagaatcttcttccagctcgtcccacattGCACCA‑TGGCACCGCTAACCCGCGATGCCATTAGTGCAATGTGGGACGAGCt > 1:208586‑M1/92‑143 (MQ=255) tGGAAACACTGTTCAGTGAGTATCTGTTACCCTGGTGTGGTGCGTTCCTTGGCAAAGTGGAGGCCCATGCAACCACGCCTTTCTGGCGCACCA‑TGGCACCGCTAACCCGCGATGCCATTAGTGCAATGTGGGACGAGCTGgaa < 1:182273/143‑1 (MQ=255) aGTGAGTATCTGTTACCCTGGTGTGGTGCGTTCCTTGGCAAAGTGGAGGCCCATGCAACCACGCCTTTCTGGCGCACCA‑TGGCACCGCTAACCCGCGATGCCATTAGTGCAATGTGGGACGAGCTGGAGGAAGATTCTgaaga > 1:47889/1‑143 (MQ=255) tagcTGTTGCCCTGGTGTGGTGCGTTCCTTGGCAAAGTGGAGGCCCATGCAACCACGCCTTTCTGGCGCACCA‑TGGCACCGCTAACCCGCGATGCCATTAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAgt < 2:455075/140‑1 (MQ=255) gtACCCCTGTTTGGTGCGCTCCGTGGCATCGTGGAGGCCCATGGAACCACGCCTTTCTGGCGCACCA‑TGGCACCGCTAAACCGCGATGCCATTAGTGCAATGTGGGACGTGCTGGAAGAAGATTCTGAAGAATAAGTGTGATc < 2:169938/142‑1 (MQ=255) tACCCGGGGGTGGGGGGTTCCTTGGCAAAGTGGAGGACCATGCAACCACGCCTTTCTGGCGCACCA‑TGGCACCGCTAACCCGCGATGCCATTAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCt < 2:353478/143‑1 (MQ=255) gaCCCTGGTGTGGTGCGTGCCTTGGCAAAGTGGAGGCCCATGCAACCACGCCTTTCTGGCGCACCA‑TGGCACCGCTAACCCGCGATGCCATTAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCt < 1:598356/142‑1 (MQ=255) tgCGTTCCTTGGCAAAGTGGAGGCCCATGCAACCACGCCTTTCTGGCGCACCA‑TGGCACCGCTAACCCGCGATGCCATTAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCATaa < 1:389654/143‑1 (MQ=255) cTTGGCAAAGTGGAGGCCCATGCAACCACGCCTTACTGGCGCACCA‑TGGCACCGCTACCCCGCGATGCCATTAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATACGTGTGATCTACGTCACTCATGACTGCGAc > 1:257470/1‑143 (MQ=255) aGTGGCGGCCCATGCAACCCCGCCTTTCTGGCGCACCC‑TGGCACAAATTGCCCGCGATGCCATTAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAAtt < 1:336477/143‑1 (MQ=255) aGTGGAGGCCCTTGCAACTACGCGTTTCTGGCGCACCA‑TGGCACCGCTAACCCGCGATGCCATTAGTGGGAGGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAAtt < 1:413115/143‑1 (MQ=255) aaCCGCGACTTTCTGGCGTCGCA‑TGGCACCGCTAACACGCGATGCTATTAGTGCAATGTGGGACGAGCTGTAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTGTTGTTGCATaaaa < 2:377886/143‑1 (MQ=255) cACGCCTTTCTGGCGCACCA‑TGGCACCGCTAACCCGCGATGCCATTAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTGTTGTTGCATAAAAtgt < 1:603536/143‑1 (MQ=255) ccTTTCTGGCGCACCA‑TTGCCCCGGTAACCCGCGGTGCCATTAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTGTTGTTGCATAAAATGTGTGc < 2:20525/143‑1 (MQ=255) tCTGGCGCACCA‑GGGCACCGCCAACCCGCGATGCCAGTAGTGCAATGTGGGAGGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTGTTGGTGCATAAAATGTGTGCTCGa < 1:121444/143‑1 (MQ=255) GCACCA‑TGGCACCGCTAACCCGCGATGCCATTAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTGTTGTTGCATAAAATGTGTGCTCGATCtcat < 2:71512‑M1/143‑1 (MQ=255) GCACCA‑TGGCACCGCTAACCCGCGATGCCATTAGTGCAATGTGGGACCAACTGCAAGAAGATTCTCAACAATAACTGTGATCTACGTCACTCATAACTGCAACGGATACTTTGTTGTTGCATAAAATGTCTGCCCGATCtcat < 2:157519‑M1/143‑1 (MQ=255) | GCTCGCAGCTTCCTGGCTGGAAGATCAGTCAACGGAAGATGAGAGCGAAGCACTGGAAACACTGTTCAGTGAGTATCTGTTACCCTGGTGTGGTGCGTTCCTTGGCAAAGTGGAGGCCCATGCAACCACGCCTTTCTGGCGCACCA‑TGGCACCGCTAACCCGCGATGCCATTAGTGCAATGTGGGACGAGCTGGAAGAAGATTCTGAAGAATAAGTGTGATCTACGTCACTCATAACTGCAACGGATAATTTGTTGTTGCATAAAATGTGTGCTCGATCTCAT > NC_000913/1099981‑1100263 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |