New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3042324 =	NA (NA)	3 (0.090)	3/256	NT	NA	noncoding (3/36 nt)	other	REP210a
	?	NC_000913	3042350 =	NA (NA)					noncoding (29/36 nt)	other	REP210a

GAACCGGATAGCATCTTCCGCGTACGCGACGATGCGAATACATTGCATATCGAGCCGCTGCCGTATTCGCTCGAAGAGTAAATCTCTTTATCGCATCAGGCATTTATCGCCTGATGCGACGCTGGCGCGTCTTATCATGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCA  >  NC_000913/3042213‑3042488                                                                                                                                          |                                                                                                                                           gAACCGGATAGCATCTTCCGCGTACGCGACGATGCGAATACATTGCATATCGAGCCGCTGCCGTATTCGCTCGATGAGTAAATCTCTTTATCGCATCAGGCATTTATCGCCTGATGCGACGCTGGCGCGTCTTATCATGTCTg                                                                                                                                       >  1:344687/1‑143 (MQ=255) cgcgcccgcgtcgcatcaggcatcggagcacaactgccggattcggcgtgaaccccttatccgatctacgggcctcgtccctgttgtgataaaggcatcaaatcccagacaTGATGCGACGCTGGCGCGTCTTATCATGTCTg                                                                                                                                       >  1:49472‑M1/112‑143 (MQ=255)  aaCCGGATAGCATCCTCCGCGTACGCGACGATGCGAATACATTGCATATCGAGCCGCTGCCGTATTCGCTCGAAGAGTAAATCTCTTTATCGCATCAGGCATTTATCGCCTGATGCGACGCTGGCGCGTCTTATCATGTCTgg                                                                                                                                      <  2:203513/143‑1 (MQ=255)     cGGATAGCATCTTCCGCGTACGCGACGATGCGAATACATTGCATATCGAGCCGCTGCCGTATTCGCTCGAAGAGTAAATCTCTTTATCGCATCAGGCATTTATCGCCTGATGCGACGCTGGCGCGTCTTATCATGTCCGGGAt                                                                                                                                   >  1:456384/1‑143 (MQ=255)      ggATAGCACCTGCCGCGTACGCGACGATGCGAATACATGGCATGTCGAGCCGCTGCCGTATTCGCTCGAAGAGTAAATCTCTTTATCGCATCAGGCATTTATCGCCTGATCCGACGCTGGCGCGTCTTATCATGTCTGGGAtt                                                                                                                                  <  1:126065/143‑1 (MQ=255)      ccgcgccgcttccggcatcggagcacacctgccggattcggcgtgaacgccttatccgatctccgggccgcgtccctgttgtgataaaggcatcaaatcccagacaTGATGCGACGCTGGCGCGTCTTATCATGTCTGGGAtt                                                                                                                                  >  2:213811‑M1/107‑143 (MQ=255)       gATAGCCTCCTCCGCGTACGTGACGATGCGCATACAGTGCATATCGAGCCGCTGCCGTATTCGCTCGAAGAGTAAATCTCTTTATCGCATCAGGCATTTATCGCCTGATGCGACGCTGGCGCGTCTTATCATGTCTGGGAttt                                                                                                                                 <  1:91054/143‑1 (MQ=39)             aTCTTCCGCGTACGCGACGATGCGAATACATTGCATATCGAGCCGCTGCCGTATTCGCTCGAAGAGTAAATCTCTTTATCGCATCAGGCATTTATCGCCTGATGCGACGCTGGCGCGTCTTATCATGTCTGGGATTTGATGcc                                                                                                                           >  1:328345/1‑143 (MQ=255)                    gcatcggagctcaactgccggattcggcgtgaacgccttatccgatctacgggcctcgtccctgttgtgataaaggcatcaaatcccagacaTGATGCGACGCTGGCGCGTCTTATCATGTCTGGGATTTGATGCCTTTATca                                                                                                                    >  1:45920‑M1/93‑143 (MQ=255)                            gccgaTGCAAAAACATGGAATATCGAGCCGCTGCCGTATTCGCTCGAAGAGTAAATCTCTTTATCGCATCAGGCATTTATCGCCTGATGCGACGCTGGCGCGTCTTATCATGTCTGGGATTTGATGCCTTTATCACAACAggg                                                                                                            <  2:562829/141‑1 (MQ=255)                                aTGCGAATACATTGCATATCGAGCCGCTGCCGTATTCGCTCGAAGAGTAAATCTCTTTATCGCATCAGGCATTTATCGCCTGATGCGACGCTGGCGCGTCTTATCATGTCTGGGATTTGATGCCTTTATCACAACAGGGACGa                                                                                                        >  2:446685/1‑143 (MQ=255)                                  gCGAATACATTGCATATCGAGCCGCTGCCGTATTCGCTCGAAGAGTAAATCTCTTTATCGCATCAGGCATTTATCGCCTGATGCGACGCTGGCGCGTCTTATCATGTCTGGGCTTTGATGCCTTTATCACAACAGGGACGAgg                                                                                                      >  2:188847/1‑143 (MQ=255)                                   cGAATACATTGCATATCGAGCCGCTGCCGTATTCGCTCGAAGAGTAAATCTCTTTATCGCATCGGGCATTTATCGCCCGAAGCGACGCTGGCGCGTCTCATCGTACCCGGGATTTGATGTAGTTATCACAACAgggcagatgc                                                                                                     >  2:241011/1‑136 (MQ=255)                                        gcgttGCGTATCGAGCCGCTGCCGTATTCGCGCGAAGAGTAAATCTCTTTAGCGCATCAGGCATTTATCGCCTGATGCGACGCTGGCGCGTCTTATCATGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTa                                                                                                <  1:562113/140‑1 (MQ=255)                                            tGCATAGCGAGCCGCGGCCGTATGCGCTCGAAGGGTAAATCTCTTTATCGCATCAGGCATTTATCGCCTGATGCGACGCTGGCGCGTCTTATCATGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATc                                                                                            <  1:236570/143‑1 (MQ=255)                                             gCATATCGAGCCGCTGCCGTATTCGCTCGAAGAGTAAATCTCTTTATCGCATCAGGCATTTATCGCCTGATGCGACGCTGGCGCGTCTTATCATGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCgcgggtcg                                                                                           >  1:579739/1‑136 (MQ=255)                                                      gCCGCTGCCGGACTCGCTCGAATGGTAAATCCCGTTATCGCATCAGGCATATAGCGCCGGATGCGACGCGGGCGCGTCTTATCATGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCg                                                                                  <  1:67603/143‑1 (MQ=255)                                                           tgtcGTATTCACTCGAAGAGTAAATCTCTTTATCGCACGAGGCATACAACGCCTGAGGCGACGCTGGCGCGTCTTATCATGGCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCAc                                                                             <  1:162891/140‑1 (MQ=255)                                                               gTATTCGCTCGAAGAGTAAATCTCTTTATCGCATCAGGCATTTATCGCCTGATGCGACGCTGGCGCGTCTTATCATGTCTGGGATTTGATGCCTTTATCACAACAGGGCCCAGGCCCGTAGATCGGATAAGGCGTTCACGCCg                                                                         >  1:522503/1‑143 (MQ=255)                                                                tATTCGCTCGAAGAGTAAATCTCTTTATCGCATCAGGCATTTATCGCCTGATGCGACGCTGGCGCGTCTTATCATGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGa                                                                        >  1:556286/1‑143 (MQ=255)                                                                     gCTCGAAGAGTAAATCTCTTTATCGCATCGGGTGGTTGGCGCCTGATGCGACGCTGGCGCGTCTTAGCATGACAGGGATCGGAGGCCTCGATCACAACAGGGACGAGACCCGTAGAACGCACACGGCGTGCACGCCGAATccc                                                                   >  2:499336/1‑142 (MQ=255)                                                                      cTCGAAGGGTAAGTCTCTTTATCGCATCAGGCATTTATCGCCTGTTGCGACGCTGGCGCGTCTTATCATGTCTGGGATTTCATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCgg                                                                  <  2:418687/143‑1 (MQ=255)                                                                      cTCGAAGAGTAAACCTCTTGATCGCACCAGGCCTTTATCGCCTGATGCGACGCTGGCGCGTCTTATCATGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATTCGGCGTGAACGCCTTATCCga                                                                  <  1:163424/143‑2 (MQ=255)                                                                             agTAAATCTCTTTATCGCATCAGGCATTTATCGCCTGATGCGACGCTGGCGCGTCTTATCATGTCTGGGATTTGATGCCTTTATCACAACCCGGCCGAGGCCCCTAGTTCGGATAAGGCGTTCACGCCGAATCCGGCAGTtgt                                                           <  1:451191/143‑1 (MQ=39)                                                                              gTAAATCTCTTTATCGCATCAGGCATTTATCGCCTGATGCGACGCTGGCGCGTCTTATCATGTCTGGGATTTGATGCCTTTATCCCAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGGATCCGGCAGTtgtg                                                          >  2:596623/1‑143 (MQ=255)                                                                               tAAATCTCTTTATCGCATCAGGCATTTATCGCCTGATGCGACGCTGACGCGTCTTATCATGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCGCGTAGGTCGTGTAAGGCGTTCACGCCGAATCCGGCAGTTGTGc                                                         >  1:618986/1‑143 (MQ=255)                                                                                    cgctTTATCGCATCAGGCAGTTATCGCCTGATGCGACGCTGGCGCGTCTTATCAGGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGa                                                    <  1:249407/141‑1 (MQ=255)                                                                                     tctTTATCGCATCAGGCATTTATCGCCTGATGCGACGCTGGCGCGTCTTATCATGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGAt                                                   <  1:446685/143‑1 (MQ=255)                                                                                       tgataaaggcatcaaatcccagacatgataagacgcgccagcgtcgcatcaTGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGAGCTCCGATGc                                                 >  1:45920‑M2/52‑143 (MQ=255)                                                                                        ttAGCGCATCAGGCATTTATCGCCTGATGCGACGGTGGCGCGTCTTATCATGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGcc                                                <  1:575958/143‑1 (MQ=255)                                                                                                     aatcccagacatgataagacgcgccagcgtcgcatcaTGTCTGGGATTTGATGCCTTTATCACAACAGGGACGCGGCCCGGAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGGTGTGCTCCGATGCCGGAAGcggcgcgg                                   >  2:213811‑M2/38‑141 (MQ=255)                                                                                                         tATCGCCTGGTGCGACGCGGGCGCGTCTTAGCATGTCTGGGATTTGATGCCTTTATCACAAGAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGgcgc                               <  2:141914/143‑1 (MQ=255)                                                                                                          cagacatgataagacgcgccagcgtcgcatcaTGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGGGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCGGGcgcg                              >  1:49472‑M2/33‑143 (MQ=255)                                                                                                           tCGCCTGATGCGACGCTGGCGCGTCTTATCATGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCCGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGt                             >  2:225057/1‑143 (MQ=255)                                                                                                             gCCTGATGCGACGCTGGCGCGTCTTATCATGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCt                           <  2:556286/143‑1 (MQ=255)                                                                                                                  ATGCGACGCTGGCGCGTCTTATCATGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGCCTTATCa                      <  2:339348‑M1/143‑1 (MQ=255)                                                                                                                    gcggcgCTGGCGCGTCTTATCATGTCTGGTATTTGATGCCTTTATCACAACCGGGACGAGGCCCGTAGATCGGATGAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAgg                    <  2:452672/143‑1 (MQ=255)                                                                                                                               gcgTCTTATCATGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGc         <  1:188847/143‑1 (MQ=255)                                                                                                                                    ttagcaTGTCTGGGATGGGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATAcc    <  2:299991‑M2/137‑1 (MQ=255)                                                                                                                                      atcaTGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCa  <  1:80566‑M2/139‑1 (MQ=255)                                                                                                                                          |                                                                                                                                           GAACCGGATAGCATCTTCCGCGTACGCGACGATGCGAATACATTGCATATCGAGCCGCTGCCGTATTCGCTCGAAGAGTAAATCTCTTTATCGCATCAGGCATTTATCGCCTGATGCGACGCTGGCGCGTCTTATCATGTCTGGGATTTGATGCCTTTATCACAACAGGGACGAGGCCCGTAGATCGGATAAGGCGTTCACGCCGAATCCGGCAGTTGTGCTCCGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAGGCATACCCA  >  NC_000913/3042213‑3042488

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.