New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3094018 =	NA (NA)	3 (0.100)	3/250	NT	NA	noncoding (33/36 nt)	other	REP216b
	?	NC_000913	3094050 =	NA (NA)					noncoding (1/36 nt)	other	REP216b

ATATTAAGGCGATTTAAACGCCTGGCGGAGTGTAAATAATATCATCGCGTCTTATTGCCGGATGCGGCGTGAACACCTTATCCAGCACACATCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAACTCTGCTGAAACGTTATCATCCCCACCTGCTGCCCGGTTTGAATAACATGCGGTA  >  NC_000913/3093910‑3094188                                                                                                                                             |                                                                                                                                           ggggatgagaacgtttcagcagagttatcagcaccgggtgggggaagggcgtttgtgacgttgccatgcccgatgcgcaagcttatcgggcctacaaaggcaataaatGTCTGATAAGACGCGTTAGCGTCGCATCAGACAtt                                                                                                                                          >  1:570396‑M1/109‑143 (MQ=255)    ttAAGGCGATTTAAACGCCTGGCGGAGTGTAAATAATATCATCGCGTCTTATTGCCGGATGCGGCGTGAACACCTAACCCCGAGATAAGGTAGGTGGGGCCACAGCACTGATAAGACGCGTTAGCGTCGCATCAGCCATTAAt                                                                                                                                       >  1:479301/1‑143 (MQ=255)     atgataacggtgcagcagagttatcagcaccgggtgggggaagggcgcttgtgacgttgccatgcccgatgcgcacgcttatcgggcctacaaaggcaataaatGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTAtt                                                                                                                                      >  1:30796‑M1/105‑143 (MQ=255)       aGGCGATTTAAACGCCTGGCGGAGTGTAAATAATATCATCGCGTCTTATTGCCGGATGCGGCGTGAACACCTTATCCAGCACACATCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGc                                                                                                                                    >  1:80562/1‑143 (MQ=255)       aGGCGATTTAAACGCCTGGCGGAGTGTAAATAATATCATCGCGTCTTATTGCCGGATGCGGCGTGAACACCTTATCCAGCACACATCTGGCAGCGGCTATAGGTCTGATAAGACGCGTCAGGGTGGCAGCAGGCATATATTgg                                                                                                                                    >  2:445201/1‑142 (MQ=37)        ggCGATTTAAACGCCTGGCGGAGTGTAAATAATATCATCGCGTCTTATTGCCGGATGCGGCGTGAACACCTTATCCAGCACACATCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGcc                                                                                                                                   <  1:364401/143‑1 (MQ=255)         gCGATTTAAACGCCTGGCGGAGGGTAAATAATATGATCGCGTCTTATTGCCGGATGCGGCGGGAACACCTTATCCAGCACACATCTGGCAGCGGCTATAGGTCTGATAAGACGCGGTAGCGACGCATCAGACCTTTATTGCCt                                                                                                                                  >  1:574621/1‑143 (MQ=255)               tgaaCGCCTGGCGGAGTGTAAATAATATCATCGCGTCTTATTGCCGGATGCGGCGTGAACACCTTATCCAGCACACATTCGGCCTCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAg                                                                                                                            <  1:415031/141‑1 (MQ=255)                 cagcagagttagcagccccgggtgggggaagggcgtttgtgacgttgccatgcccgatgcgcaagcttatcgggcctacaaagccaataaatGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGc                                                                                                                          >  1:26541‑M1/93‑143 (MQ=255)                  aCGCCTGGCGGAGTGTAAATAATATCATCGCGTCTTATTGCCGGATGCGGCGTGAACACCTTATCCAGCACACATCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGcc                                                                                                                         <  1:642740/143‑1 (MQ=255)                  aCGCCCGGCGGGGTGTAATTAATATCATCGCGTCTTATTGCCGGATGCGGCGTGAACACCTTATCCAGCACACATCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGcc                                                                                                                         <  2:349743/143‑1 (MQ=255)                   cGCCTGGTGGAGTGTAAGTAATATCGTCGCGTCTTATTGCCGGATGCGGCGTGAACACCTTATCCAGCACTCATCTGGCAGCGGCTATATGTCGGATAAGACGCGTTAGCGTCGCATCTGACATTTATTGCCTTTGTAGGccc                                                                                                                        <  1:600846/143‑1 (MQ=37)                   cGCCTGGCGGCGTGTAAATAATATCATCGCGTCTTATTGACGCATGCGGCGTGAACACCTTATCCAGCACACATCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGccc                                                                                                                        <  1:179089/143‑1 (MQ=255)                   cGCCTGGCGGAGTGTAAATAATATCATCGCGTCTTATTGCCGGATGCGGCGTGAACACCTTATCCAGCACACATCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGccc                                                                                                                        <  2:501027/143‑1 (MQ=255)                          cggggggtAAATAAGTTGATGGCGGGTTCTTGCCGGATGCGGCGGGAACACCTTAGCCGGCACACGTCTCGCAGCGGCTATAGGTTTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGc                                                                                                                 <  2:110742/137‑1 (MQ=255)                          cGGAGTGTACATAATATCATCGAGTCTTAGTGCCGGATGCGGCGTGAACACCTTATCCAGCACACATCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGc                                                                                                                 <  1:574548/143‑1 (MQ=255)                          cGGAGTGTAAATAATATCATCGCGTCTTATTGCCGGATGCGGCGTGAACACCTTATCCAGCACACATCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGc                                                                                                                 <  2:380602/143‑1 (MQ=255)                               tgtAAATAATATCATCGCGTCTTATTGCCGGATGCGGCGTGAACACCTTATCCAGCACACATCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTgcg                                                                                                            >  2:107291/1‑143 (MQ=255)                               ggtAAATAATATCATCGCGTCTTATTGCCGGATGCGGCGTGAACACCTTATCCAGCACACATCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTgcg                                                                                                            <  1:367512/142‑1 (MQ=255)                                gtAAATAATATCATCGCGTCTTATTGCCGGATGCGGCGTGAACACCTTATCCAGCACACATCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTgcgc                                                                                                           <  1:580110/143‑1 (MQ=255)                                 tAAATAATATCATCGCGTCTTATTGCCGGATGCGGCGTGAACACCTTATCCAGCACACATCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCGTCGGACATTTATTGGCTTTGTAGGCCCGATAGGCTTGCGCa                                                                                                          >  1:177288/1‑143 (MQ=255)                                 tAAATAATATCATCGCGTCTTATTGCCGGATGCGGCGTGAACACCTTATCCAGCACACATCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTTGCTTTGTAGGATCGATAAGCCTGTGCa                                                                                                          >  2:422420/1‑143 (MQ=25)                                       atatCATCGCGTCTTATTGCCGGATGCGGCGTGAACACCTTATCCAGCACACATCTGGCAGCGGCTATAGGCCTGATAAGACGCGTTAGCGTCGCATCCGACATTTATTGCCTTTGTAGGCCCGATCAGGTTGCGCAACGGGc                                                                                                    >  2:344011/1‑143 (MQ=37)                                            atcGCCTCTTAGGGCGGGATGCGGCGTGAACACCTTATCCAGCACACATCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGc                                                                                               <  1:616888/143‑1 (MQ=255)                                                cgTCTTATTGCCGGATGCGGCGTGAACACCTTATCCAGCACACATCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACg                                                                                           >  2:514893/1‑143 (MQ=255)                                                 gTCTTGTTGCCGGCTGCGGCGTGAACACCTTATCCAGCACTCGTCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGt                                                                                          <  2:61113/143‑1 (MQ=255)                                                       ttGCCGGATGCGGCGTGAACACCTTATCCAGCACACATCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACaaa                                                                                    >  1:518701/1‑143 (MQ=255)                                                                         agaacgtATCCAGGACACATCGTGCAGCGGCTATAGGTCCGATAAGACGCGTTAGCTTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCgg                                                                  <  1:285641/137‑1 (MQ=255)                                                                          cacCTTATCCAGCACACATCTGGCAGCGGCTATAGGTCTGATACGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGCCCACGTCACACACGACCTTCCCCCACCGGGt                                                                 >  2:98921/1‑143 (MQ=255)                                                                           acCTTATCCAGCACACATCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTg                                                                >  1:571351/1‑143 (MQ=255)                                                                                aTCCAGCACACATCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGAt                                                           <  2:580635/143‑1 (MQ=255)                                                                                 tCCAGCACACAGCTGGCAGCGGCTATAGGTCTGAGAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATa                                                          <  1:60081/143‑1 (MQ=255)                                                                                    aGCACACATCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAAct                                                       >  1:437620/1‑143 (MQ=255)                                                                                      cacacgTCTGGCAGCGGCTATAGGTCTGATAAGTCGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAActct                                                     <  2:117182/143‑1 (MQ=255)                                                                                          gcctacaaaggcaataaatgtctgatgcgacgctaacgcgtcttatcagacATTTATTGGCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGGGCTGCTAACTctgctg                                                 >  1:26541‑M2/52‑143 (MQ=255)                                                                                            gcTGGCAGCGGCTATAGGTCTGGTAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAACTCTGCTGaa                                               <  2:239370/142‑1 (MQ=255)                                                                                              tGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGACAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAACTCTGCTGAAAc                                             <  1:107291/143‑1 (MQ=255)                                                                                               ggCAGCGGCTAGAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAACTCTGCTGAAACg                                            <  1:114099/143‑1 (MQ=255)                                                                                                      aataaatgtctgatgcgacgctaacgcgtcttatcagacATTTATTGCCTTTGTAGGCCCGATAAGCGTGCGCATCGGGCATGGCAACGTCACAAGCGCCCTTCCCCCACCCGGTGCTGATAACTCTGCTGCACCGTTatcat                                     >  1:30796‑M2/40‑143 (MQ=255)                                                                                                       cTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAACTCTGCTGAAACGTTatcatc                                    <  1:121128/143‑1 (MQ=255)                                                                                                         ataGGTCTCATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAACTCTGCTGAAACGTTATCATccc                                  <  1:569628/143‑1 (MQ=255)                                                                                                          aatgtctgatgcgacgctaacgcgtcttatcagacATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAACTCTGCTGAAACGTTCTCATcccc                                 >  1:570396‑M2/36‑143 (MQ=255)                                                                                                              TCTGATAAGGCGCGGTAGCGTCGGGTCGTACATTTATTGCCTTTGTAGGCCGGATAAGCGTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAACTCTGCTGAAACGTTATCATCCCCACct                             >  2:286715‑M1/1‑143 (MQ=255)                                                                                                                      gACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACCTCACCACCGCCCTTCCCCCACCCGGTACTGATAACCCTGCTAAAACCTTATCATCCCCCCCACCTCCCCg                     >  2:241823/1‑143 (MQ=255)                                                                                                                       aCGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGGTAACTCTTCTGAAACGTTAGTCTCACCACCTGCCGCCCgg                    >  1:638833/1‑143 (MQ=255)                                                                                                                       aCGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAACTCTGCTGAAACGTTATCATCCCCCCCTGCTGCCCgg                    >  1:574624/1‑143 (MQ=255)                                                                                                                             tAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAACTCTGCTGAAACGTTATCATCCCCACCTGCTGCCCGGTTTGaa              <  1:323398/143‑1 (MQ=255)                                                                                                                              aGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAACTCTGCTGAAACGTTATCATCCCCACCTGCTGCCCGGTTTGAAt             <  2:571351/143‑1 (MQ=255)                                                                                                                                         agacATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGCACACTGTGCGGAAACGTTCTCATCCCCACCCGCTGCCCTGTGTGAATAACACGCGGTa  >  2:74996‑M2/5‑143 (MQ=255)                                                                                                                                             |                                                                                                                                           ATATTAAGGCGATTTAAACGCCTGGCGGAGTGTAAATAATATCATCGCGTCTTATTGCCGGATGCGGCGTGAACACCTTATCCAGCACACATCTGGCAGCGGCTATAGGTCTGATAAGACGCGTTAGCGTCGCATCAGACATTTATTGCCTTTGTAGGCCCGATAAGCTTGCGCATCGGGCATGGCAACGTCACAAACGCCCTTCCCCCACCCGGTGCTGATAACTCTGCTGAAACGTTATCATCCCCACCTGCTGCCCGGTTTGAATAACATGCGGTA  >  NC_000913/3093910‑3094188

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.