| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,708,287 | C→T | 13.0% | intergenic (‑582/+329) | dppA ← / ← proK | dipeptide ABC transporter periplasmic binding protein/tRNA‑Pro |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,708,287 | 0 | C | T | 13.0% | 64.8 / 2.5 | 32 | intergenic (‑582/+329) | dppA/proK | dipeptide ABC transporter periplasmic binding protein/tRNA‑Pro |
| Reads supporting (aligned to +/- strand): ref base C (13/14); new base T (2/2); total (16/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.09e-01 | |||||||||||
AGGGCCAGCCATAAGTAACGCAAAAAAAGATTTAAGCAAATATAAAAAAAGACAATGGTTTCTGTCACAAATCCGTTAATGGATAGTGAGATATGGGGCGCAAATTTGGCAGGGAAATGTGTGTCGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > NC_000913/3708145‑3708419 | agagccagacaAAATTAACGCAAATAAAGATTGAAGCAAAGATAAAAAAAGACAAGGGTTTCTGTCACAAATCCGTTAATGGATAGTGAGATATGGGGCGCAAATTTGGCAGGGAAATGTGTGTCGTGTAGGTCGAATAAGGc < 2:96312/140‑1 (MQ=255) gagacagacaTAAGTAACGCAAAAAAAGATTTAAGCAAATATAAAAAAAGACAATGGTTTCTGTCACAAATCCGTTAATGGATAGTGAGATATGGGGCGCAAATTTGGCAGGGAAATGTGTGTCGTGTAGGTCGAATAAGGCg < 2:157574/139‑1 (MQ=255) ccagccaTAAGTAACGCAAAAAAAGATTTAAGCAAATATAAAAAAAGACAATGGTTTCTGTCACAAATCCGTTAATGGATAGTGAGATATGGGGCGCAAATTTGGCAGGGAAATGTGTGTCGTGTAGGTCGAATAAGGCGGTc > 1:400172/1‑143 (MQ=255) gTAAAGCAAAAAAAGATTTAAGCAAATATAAAAAAAGACAATGGTTTCTGTCACAAATCCGTTAATGGATAGTGAGATATGGGGCGCAAATTTGGCAGGGAAATGGGTGTCGTGTCGGTCGAATAAGGCGGTCGCGCCGCATc > 2:267619/1‑143 (MQ=255) aaaaaaaaaaagaaGATGCAAGCAAATAAAAAAAAAGACAATGGTTACAGGCACAAAGGCGTTAACGGGTAGTGAGGTATGGGGGGCAGATTGGGCTGGGAAGTGGGTGTCGTGTAGGTCGAATAAGGCGGTGGCGCCGCATc < 2:418700/136‑1 (MQ=255) gCAAAAAAAGATTTAAGCAAATATAAAAAAAGACAATGGTTTCTGTCACAAATCCGTTAATGGATAGTGAGATATGGGGCGCAAATTTGGCAGGGAAATGTGTGTCGTGTAGGTCGAATAAGGTGGTCGCGCCGCATCCGACa > 1:338486/1‑143 (MQ=255) gCAAAAAAAGATTTAAGCAAATATAAAAAAAGACAATGGTTTCTGTCACAAATCCATTAATGGATAGTGAGATATGGGGCGCAAATTTGGCAGGGAAATGTGTGTCGTGTAGGTCGAATAAGGTGGTCGCGCCGCATCCGACa > 1:338459/1‑143 (MQ=255) aaaaaaaGATTTAAGCAAATATAAAAAAAGACAATGGTTTCTGTCACAAATCCGTTAATGGATAGTGAGATCTGGGGCGCAAATTTGGCAGGGAAATGTGTGTCGTGTAGGGCGACTAAGGGGGGAGCGCCGGATACGAGAAt > 2:172903/1‑143 (MQ=255) aaaGATTTAAGCAAATATAAAAAAAGACAATGGTTTCTGTCACAAATCCGTTAATGGATAGTGAGATATGGGGCGCAAATTTGGCAGGGAAATGTGTGTCGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGcc < 2:544339/143‑1 (MQ=255) aTTTAAGCAAATATAAAAAAAGACAATGGTTTCTGTCACAAATCCGTTAACGGATAGTGAGATATGGGGCGCAAATTTGGCAGGGAAATGTGTGTCGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGACGATGGCCGGca > 1:67696/1‑143 (MQ=255) gccggTCAAAAGTCCGTGAATCGATAGCGCGATATGGGGCGCAAATTTGGCAGGGAAATGTGTGTCGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGCCAATGGCCGGCACAGTTGCCTGATGCGACGCTGACGCGTCtt < 2:59265/139‑1 (MQ=255) tCACAAATCCGTTAATGGATAGTGAGATATGGGGCGCAAATTTGGCAGGGAAATGTGTGTCGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCTGATGCGACGCTGACGCGTCGTATCAg > 1:193002/1‑143 (MQ=255) aaTCCGTTAATGGATAGTGAGATATGGGGCGCAAATTTGGCAGGGAAATGTGTGTCGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTa < 1:333861/143‑1 (MQ=255) tCCGTTAATGGATAGTGAGATATGGGGCGCAAATTTGGCAGGGAAATGTGTGTCGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCTGATGCGACGCTGACGCGTCTTCTCCGGCCTACg > 1:66213/1‑143 (MQ=255) cggtgcaTGGTTGGTGTGAGATGGGGCGCAAATTGGGCAGGGACATGTGTGTCGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACgt < 2:577295/137‑1 (MQ=37) cGTTAATGGATCGTGAGATATGGGGCGCAAATTTGGCAGGGAAATGTGTGTCGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACgtc < 1:178141/143‑1 (MQ=255) ttAATGGATAGTGCGATATGGGGCGCAAATTTGCCAGGGAAATGTGTGTCGTGTAGGTCGAATAAGCCGGTCGCGCCGCATCCGACAAGGGCCGGCACATTCTCCTGCTGCCCCGCTGCCCCGTCTCCTCAGCCCTCCgtccc > 2:40948/1‑141 (MQ=255) agatcgggggCGCAGATGTGGCAGGGAGATGTGTGTCGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCt < 2:656021/137‑1 (MQ=38) agaTATGGGGCGCAAATTTGGCAGGGAAATGTGTGTCGTGTAGGTCGAATAAGGTGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCt < 2:338486/143‑1 (MQ=255) agaTATGGGGCGCAAAGTTGGCAGGGAAATGTGTGTCGTGTAGGTCGAATAAGGTGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCt < 2:338459/143‑1 (MQ=255) tGGGGCGCAAATTTGGCAGGGAAATGTGTGTCGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGcccc > 1:491983/1‑143 (MQ=255) gcgcAAATTTGGCAGGGAAATGTGTGTCGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGa > 1:280055/1‑143 (MQ=255) gcAAATTTGGCAGGGAAATGTGTGTCGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCCACGTCGCGTCGAAACTCCCTGCCCCCGGAgg > 2:506637/1‑143 (MQ=255) aaaTTTGGCAGAGACTTGTGTGTCGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGtt < 2:21097/143‑1 (MQ=255) cgCAGGGAAATGTGGGTCGTGGAGGGCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCGGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATc < 2:540436/142‑1 (MQ=255) aGGGAAATGTGTGTCGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCACGAACGCCCTCATCCTc > 2:37004/1‑143 (MQ=39) gtgtgtCGTGTAGTTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTg < 1:156686/143‑1 (MQ=255) ggtCGGGTAGGTCGAACAAGGCCGTCGCGCCGCATCCGACAATGGCCTGCACATGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAg < 2:335606/142‑1 (MQ=38) tgtAGGTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTATCATCCTCATGAGCTGCAGATGCa > 1:266941/1‑143 (MQ=255) gTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCaaaaaa > 1:608827/1‑143 (MQ=255) tCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCCTGAGCTGCAGATGCAAAAAAg > 1:337356/1‑143 (MQ=255) tCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAg < 1:1121/143‑1 (MQ=255) tCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAg < 1:143987/143‑1 (MQ=255) | AGGGCCAGCCATAAGTAACGCAAAAAAAGATTTAAGCAAATATAAAAAAAGACAATGGTTTCTGTCACAAATCCGTTAATGGATAGTGAGATATGGGGCGCAAATTTGGCAGGGAAATGTGTGTCGTGTAGGTCGAATAAGGCGGTCGCGCCGCATCCGACAATGGCCGGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGTCGAGTCGAACCTCCCTGCCCCCGGAGGTTCTCATCCTCATGAGCTGCAGATGCAAAAAAG > NC_000913/3708145‑3708419 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |