mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 15 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1096961 = | 35 (1.050) | 6 (0.230) +28 bp |
3/208 | NT | 30.4% | intergenic (+132/+604) | ycdU/serX | uncharacterized protein YcdU/tRNA‑Ser |
| ? | NC_000913 | 1097456 = | 0 (0.000) | intergenic (+627/+109) | ycdU/serX | uncharacterized protein YcdU/tRNA‑Ser | |||||
| * | ? | NC_000913 | 1096961 = | 35 (1.050) | 6 (0.230) +28 bp |
3/208 | NT | 26.2% | intergenic (+132/+604) | ycdU/serX | uncharacterized protein YcdU/tRNA‑Ser |
| ? | NC_000913 | 1097275 = | 8 (0.240) | intergenic (+446/+290) | ycdU/serX | uncharacterized protein YcdU/tRNA‑Ser | |||||
| * | ? | NC_000913 | 1096961 = | 35 (1.050) | 6 (0.230) +28 bp |
3/208 | NT | 22.7% | intergenic (+132/+604) | ycdU/serX | uncharacterized protein YcdU/tRNA‑Ser |
| ? | NC_000913 | 1097094 = | 17 (0.510) | intergenic (+265/+471) | ycdU/serX | uncharacterized protein YcdU/tRNA‑Ser | |||||
| * | ? | NC_000913 | = 572411 | 536 (16.150) | 5 (0.160) | 4/250 | NT | 1.2% | coding (44/102 nt) | ylcH | DLP12 prophage; uncharacterized protein YlcH |
| ? | NC_000913 | = 572431 | 348 (11.080) | coding (64/102 nt) | ylcH | DLP12 prophage; uncharacterized protein YlcH | |||||
| * | ? | NC_000913 | 572348 = | 1167 (35.160) | 3 (0.090) | 3/254 | NT | 0.30% | intergenic (+97/‑20) | ybcM/ylcH | DLP12 prophage; putative DNA‑binding transcriptional regulator/DLP12 prophage; uncharacterized protein YlcH |
| ? | NC_000913 | 572375 = | 879 (27.530) | coding (8/102 nt) | ylcH | DLP12 prophage; uncharacterized protein YlcH | |||||
| * | ? | NC_000913 | = 572325 | 1204 (36.270) | 18 (0.590) | 10/244 | NT | 1.6% | intergenic (+74/‑43) | ybcM/ylcH | DLP12 prophage; putative DNA‑binding transcriptional regulator/DLP12 prophage; uncharacterized protein YlcH |
| ? | NC_000913 | = 572334 | 1174 (38.290) | intergenic (+83/‑34) | ybcM/ylcH | DLP12 prophage; putative DNA‑binding transcriptional regulator/DLP12 prophage; uncharacterized protein YlcH | |||||
| * | ? | NC_000913 | 571148 = | 1677 (50.520) | 3 (0.100) | 3/250 | NT | 0.19% | coding (256/552 nt) | ybcL | DLP12 prophage; periplasmic protein YbcL |
| ? | NC_000913 | 571174 = | 1496 (47.610) | coding (282/552 nt) | ybcL | DLP12 prophage; periplasmic protein YbcL | |||||
| * | ? | NC_000913 | = 570701 | 1253 (37.750) | 25 (0.800) | 16/250 | NT | 2.1% | intergenic (+273/‑192) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL |
| ? | NC_000913 | = 570711 | 1182 (37.620) | intergenic (+283/‑182) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL | |||||
| * | ? | NC_000913 | 570695 = | 1230 (37.050) | 31 (0.990) | 16/250 | NT | 2.6% | intergenic (+267/‑198) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL |
| ? | NC_000913 | 570719 = | 1182 (37.620) | intergenic (+291/‑174) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL | |||||
| * | ? | NC_000913 | 570627 = | 1437 (43.290) | 8 (0.270) | 5/238 | NT | 0.65% | intergenic (+199/‑266) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL |
| ? | NC_000913 | 570677 = | 1170 (39.130) | intergenic (+249/‑216) | ybcK/ybcL | DLP12 prophage; putative recombinase/DLP12 prophage; periplasmic protein YbcL | |||||