New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	566777 =	NA (NA)	3120 (57.830)	271/280	0.0	98.2%	noncoding (1/1258 nt)	IS3	repeat region
	?	NC_000913	= 572471	58 (1.070)					coding (6/456 nt)	ybcN	DLP12 prophage; DNA base‑flipping protein

GATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCT  >  NC_000913/566639‑566912                                                                                                                                           |                                                                                                                                        gATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCGATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATc                                                                                                                                     <  1:501110/143‑1 (MQ=255)      cAGAAATTAAAGCTAAGTTCGGCCTGTAAGGAGCAAGTGTATGACCGGCAAAGAGGCAATTCTTCATTCCCGAGTGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGCTACCAGGCCCGCCCGGACTCTGACCtcccc                                                                                                                                >  1:611434/1‑139 (MQ=255)      cAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGGAACAGGCGCACCCGTAATCTGATCTTAcc                                                                                                                                >  2:287715/1‑143 (MQ=255)       aGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGAGCACAAGACGTTGCCGTGGTAGCAGGCGCAACGGTAATCTGATCTTAcgc                                                                                                                               >  1:416776/1‑141 (MQ=255)          aaTTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGc                                                                                                                            >  1:535510/1‑143 (MQ=255)           actacaGCTAAGTTCCGTCTGCAGGGGGCAAGTGGTTGTCGGGCTGCGGGGCACTTATTCATCACCCGGTGTCGCATATGCGCTTCTGTGCACAGGACTTTGCCGCGGTAACAGGCGCACCTGTAATCTGATCTTACCCAGCa                                                                                                                           <  2:65319/138‑1 (MQ=255)           aTTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAGTCTGAGCTTACCCAACa                                                                                                                           >  2:697976/1‑143 (MQ=255)                aggtAAGTGAGGACTGAAAGGAGCAAGGGTATGAGTGGCAAAGAGGCAATTATTCATTACCTGGAGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCATCCGTAATCTGATCTTACCCAGCAATAGt                                                                                                                      <  2:71906/140‑1 (MQ=255)                aGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACATGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATaac                                                                                                                      >  2:793220/1‑141 (MQ=255)                  cTAAGTTCGGACGGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTgg                                                                                                                    <  1:130542/143‑1 (MQ=255)                       ttCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACAcg                                                                                                               >  1:828325/1‑143 (MQ=255)                        tCGGACTGAAAGGAGCAAGTGTATGACGTGCAAGTAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGAGGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACAcgc                                                                                                              <  2:496113/143‑1 (MQ=255)                             cTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACCCGCGGCTa                                                                                                         >  1:238135/1‑143 (MQ=255)                             cTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTa                                                                                                         >  1:487666/1‑143 (MQ=255)                              tGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTaa                                                                                                        <  1:576528/143‑1 (MQ=255)                                aaaGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAAACGTGAGCTGATCTTACCCAGCAAAACTGGACACGCGGCAAAGt                                                                                                      >  2:693119/1‑143 (MQ=255)                                  cggAGCACGTGGATGGCGGGCAAAGATGCAATTAGTCATTCCCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGCTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGa                                                                                                    <  2:224592/142‑1 (MQ=38)                                    gAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGt                                                                                                  <  1:458008/143‑1 (MQ=255)                                       caggtgtATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTaaa                                                                                               <  1:461618/140‑1 (MQ=255)                                        aggtggttGAGGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCAGAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTTATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAAc                                                                                              <  2:322792/136‑1 (MQ=38)                                         aGTGTATGACGGGCAAAGAGGCAAGGACTCATCACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAAct                                                                                             <  1:554327/143‑1 (MQ=255)                                                   gggCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCaga                                                                                   >  1:19954/1‑143 (MQ=255)                                                     gCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAgg                                                                                 >  1:579705/1‑143 (MQ=255)                                                             gCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTcac                                                                         >  1:193110/1‑143 (MQ=255)                                                               aaTTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACAt                                                                       >  1:794819/1‑143 (MQ=255)                                                                     tCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCACCCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGGGACTCACAGGACaac                                                                 >  2:432298/1‑142 (MQ=255)                                                                      cATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGGAAACTCTCAGTCAGAGGTGACTCACAAGACaaaa                                                                >  1:177414/1‑143 (MQ=255)                                                                        ttACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTGACATGAGAAAAAc                                                              >  2:385712/1‑143 (MQ=255)                                                                         tACCTGGGGAGGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTACCAGGCGCAACCGTAATCTGATCTTACGCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACa                                                             <  2:611434/143‑1 (MQ=255)                                                                         gatcTGGGGACGCAGAAGCGCCTCAGTGCGCAGGACGTGGCCGCGGTAACAGGCGCAACCGTAATCTGATCTCACCCAGCAATAGGGGACACGCGGCTAAGTGAGTAAACTCTCAGTCCGAGGTGACTCACATGACAAAAACa                                                             <  2:514403/140‑1 (MQ=18)                                                                             gggggACGCATAAGGGGTGCTGTGCGCAGGACGTTGCCGCCGCTACATTCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTAt                                                         <  2:704614/142‑1 (MQ=17)                                                                                ggACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCaa                                                      <  1:492346/143‑1 (MQ=255)                                                                                 gACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAAc                                                     <  1:703324/143‑1 (MQ=255)                                                                                    gCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCAGATGACAAAAACAGTATCACCCAg                                                  >  1:178494/1‑143 (MQ=255)                                                                                    gCATAAGAGCTTCTGAGCACAGGACATTGCCGCGGTAACAGGCGCAACCGTAATCTGATGTTACCCAGCAAAAGTGGACACGCGGCTAAGTGAGTAAACTCAAAGTCAGAGGTGACTCACGAAACAAAAACAGTAACAACCAg                                                  >  2:844489/1‑143 (MQ=18)                                                                                      aTAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTa                                                >  2:863270/1‑143 (MQ=255)                                                                                      aTAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTa                                                >  1:185566/1‑143 (MQ=255)                                                                                         agagCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCCTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTaaaa                                             <  1:810602/143‑1 (MQ=255)                                                                                                      acaGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGTAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACa                                <  1:734864/143‑1 (MQ=255)                                                                                                       caGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAg                               <  1:648260/143‑1 (MQ=255)                                                                                                             gTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAACAACCCCGTAAACAGGATTCg                         >  1:818035/1‑143 (MQ=255)                                                                                                                 ccGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAACAACCCCGTAAACAGCATTCGCCTg                     >  2:638585/1‑143 (MQ=255)                                                                                                                   gcgGTAACAGGCGCAACCGAAATATAATAGTACCCAGCAATAGTGGACACCGAACTACTTAATTTAAATCAAACGGAGAAGCGACCCACATGACAAAAGCAGTAACAACCAGTACAAAACCCCGCCAACAGCATTCGcataca                   >  2:709530/1‑138 (MQ=9)                                                                                                                         aCAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAGAACCCCGTAAATAGCATTCGCCTGAATTTCGc             <  2:521575/143‑1 (MQ=255)                                                                                                                         aCAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCAGTCGCCAGAATTTCGc             >  1:447446/1‑143 (MQ=255)                                                                                                                           aGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAg           >  1:149167/1‑143 (MQ=38)                                                                                                                               gcAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGaa       <  1:338999/143‑1 (MQ=34)                                                                                                                               gcAACCGTAATCTGATCTGACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGaa       <  1:883397/143‑1 (MQ=21)                                                                                                                                 aaCCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGc     >  1:667602/1‑143 (MQ=32)                                                                                                                                    cGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAGAAAGTAACGACCAGTAAAAAACCCCGTAAACAGCATTCACCTGAATATCGCAGTGAAGCCCt  >  1:835840/1‑143 (MQ=11)                                                                                                                                           |                                                                                                                                        GATCGCAGAAATTAAAGCTAAGTTCGGACTGAAAGGAGCAAGTGTATGACGGGCAAAGAGGCAATTATTCATTACCTGGGGACGCATAAGAGCTTCTGTGCACAGGACGTTGCCGCGGTAACAGGCGCAACCGTAATCTGATCTTACCCAGCAATAGTGGACACGCGGCTAAGTGAGTAAACTCTCAGTCAGAGGTGACTCACATGACAAAAACAGTATCAACCAGTAAAAAACCCCGTAAACAGCATTCGCCTGAATTTCGCAGTGAAGCCCT  >  NC_000913/566639‑566912

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.