| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,368,101 | T→C | A21A (GCT→GCC) | arnA → | fused UDP‑4‑amino‑4‑deoxy‑L‑arabinose formyltransferase/UDP‑glucuronate dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,368,101 | 0 | T | C | 94.1% | 76.6 / NA | 34 | A21A (GCT→GCC) | arnA | fused UDP‑4‑amino‑4‑deoxy‑L‑arabinose formyltransferase/UDP‑glucuronate dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base T (0/2); new base C (15/17); total (15/19) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.92e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.12e-01 | |||||||||||
TACACCGATGTCCGCGCCCGCCCCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCTGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGTTTATGCGCCGGATAACGTTAATCATCCGCTG > NC_000913/2367965‑2368236 | tACACCCATGTCCGCGCCTGCCCCCGCTATTTTGTCCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGCAACCCGTCGTTTGTGCCTACCACGATCTGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGt < 2:691704/143‑1 (MQ=255) acacCGATGTCCGCGCCCGCCCCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAGACCGTCGTTTTTGCCTACCACGCTCTGGGATGCCTCGGTAGTGAAGGCCTGCGGGCCGCCGGtt > 1:905618/1‑143 (MQ=255) cacCGGTGGGCGCGCCGGCCCCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTa < 2:270067/143‑1 (MQ=255) acCGATGTCCGCGCCCGCCCCCGCTATTTTGTTCAGCAAGTTATCTGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTAc < 1:706625/143‑1 (MQ=255) cGATGTCCGCGCCCGCCCCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGtctctc > 1:168828/1‑138 (MQ=255) ctGTCCGCGTCCGCCCCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGaaa < 2:940028/142‑1 (MQ=255) cgcccgccCCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGCTGCCTCGGTATTGCAGCCCTGCTGGCCGCCGGTTACGCAATCAgcgc > 1:958758/1‑143 (MQ=255) gcccCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTACTGGCCGCCGGTTACGAAATTAGCGCCAttt > 2:932988/1‑143 (MQ=255) gTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGTCCGCCGGTTTCGAAATTAGTGCCATTTTTACCAATACTGAt > 1:465149/1‑143 (MQ=255) cGTCCATCCAGCAAGGAAAATGAATAATGAAGACCGGCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGaaaaa < 2:467554/143‑1 (MQ=255) cccaGCAAGGAAATTGAATAATGAAAACCGTCGTTTTTGCCTCCCACGATATGGGATGCCTCGGTATTGAAGTCTTGTTGGTCGTCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCttt < 1:673257/142‑1 (MQ=255) caGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCACTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATGCCGGTGAAAAAGGCTtata > 2:921280/1‑143 (MQ=255) aGCAAGGAAGATGAAGAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTAt < 2:685677/143‑1 (MQ=255) aaaaaTAAATAATGAAAACCGTCCTTTTTCCCTACCACGATATGGTATGCCTCGGTATTGAAGCCCTTCTGGCTTCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCg < 1:361520/142‑1 (MQ=255) aaaTGAATTACGACAAGCATCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGt < 2:391190/143‑1 (MQ=255) gAATAATGAAAACCGTCTTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGTTGTTTGTTATGAAATTAGAGCCATTTTTACACAAACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCt < 1:85951/143‑1 (MQ=255) tcgaCCGGCGTTGGTGCGTACGACGATGTGGGATTCGTCGGGATTGGAGCGCTTCTGGGCGCTGGTTTTGACATTGGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTggc < 2:299768/140‑1 (MQ=255) gtaaCCGTCGTTTTTGCCTACTCCGATATGGCATGCCTTGGTCTTGAAGCCCTGCTGGCCGCCGGTTACGACAGTAGCGCCATGTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTggc < 2:661218/141‑1 (MQ=255) gcatccGTCGTTTTTGCCTGCCACGATCTGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAACTTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTggc < 2:898939/139‑1 (MQ=255) tttttGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATCCTGCTAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGacgga > 1:197900/1‑139 (MQ=255) tGCCGACGACGATCGTGGATGCCTCTGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCGTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCa < 2:149595/143‑1 (MQ=255) cTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATATTTTTGGTGAAAGAGCCATTAATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTc < 1:783608/143‑1 (MQ=255) gtgcagctGGGACGCCTCGGTATCGACCCGCTGCTGGCCGCCGGCTACGAAATTAGCGCCATTTTTACCCATACTGATACTCCCGGTGCAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGt < 1:826137/136‑1 (MQ=255) cACGATATGGGATGCCTCGGAATTGAAGCCCTGCAGGCCGCCGGTTACGAAAATAACGACATATTTACGCATAGTGATAATCCAGGTGAAAAAGCCAGTGATGGGACGGTGGCTCGAGTGGCAGCAGACAAAGACAGTGCGGt > 2:51061/1‑143 (MQ=255) aCGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGCCTGGCGGCGGCACGAGGCCTTCCGCtt > 1:359448/1‑143 (MQ=255) tCGGTATTGAAGCCCTGCTGGCCGCCGATTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGTTTATGCGCCGGATAAc > 1:392568/1‑143 (MQ=255) cgctATTGAAGGCCTGCTGGCCGCCGGTTACGAGATGTGCGTCATTTTTACCCATACTGGTAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCTGTTTATGCGCCGGATAACg < 2:140488/140‑1 (MQ=255) ggTATTGAAGCCCTGCTGGCCGCCGGGTACGAAATTAGCGCCATTGTTACCCATACTGATAATCCCGGTGAAAGAGCCTTGTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGACATTCCGGTTTATGCGGCGGagagggt > 2:980604/1‑137 (MQ=255) ttGAAGCCCTGCTGGCCGCCGGTTACGACATTAGCGCCATTTTTTCCCATTCTGATAATCCCGGTGATAATGTCTTTTATTGTTCTGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGTTTATGCGCCGGATAACGTTAat < 1:598383/143‑1 (MQ=255) ttGAAGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGGTTATGCGCCGGATAACGTTAat > 1:151985/1‑143 (MQ=255) aaGCCCTGCTGGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAGGAGGCATTCCGGTTTATGCGCCGGATAGCGTTAatcat > 2:699769/1‑143 (MQ=255) aGCCCTGCAGGCCGACGGTTACGAAATTAGCGCCATTTATACCCATACTGATAATCCCGGTAAAAAAGCTTTTTATGGTTTGGTGGCTAGTCTGGCGGCGAAAAGAGGCATTCCGGTTTATGCGCCGGATAACGTTAatcatc < 1:53841/143‑1 (MQ=255) ctgctgGCCGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGTTTATGCGCCGGATAACGTTAATCATCCGCt > 1:334768/1‑143 (MQ=255) tgctgGCCGCCGGTTACGAAATTAGCGCCCATCATACCCATACTGATAATCCCGGTGAAAAAGCCTGTTATGGGTCGGTGGCTCGTCTGGCGGCGGAAAGAGGACTACCGGTTTACGCGCCGCCGAACGTGACTCATcccgtg > 2:819126/1‑139 (MQ=255) | TACACCGATGTCCGCGCCCGCCCCCGCTATTTTGTTCAGCAAGTTATCCGTCCATCCAGCAAGGAAAATGAATAATGAAAACCGTCGTTTTTGCCTACCACGATATGGGATGCCTCGGTATTGAAGCCCTGCTGGCTGCCGGTTACGAAATTAGCGCCATTTTTACCCATACTGATAATCCCGGTGAAAAAGCCTTTTATGGTTCGGTGGCTCGTCTGGCGGCGGAAAGAGGCATTCCGGTTTATGCGCCGGATAACGTTAATCATCCGCTG > NC_000913/2367965‑2368236 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |