| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,473,614 | C→T | W156* (TGG→TGA) | rpsG ← | 30S ribosomal subunit protein S7 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,473,614 | 0 | C | T | 96.4% | 159.5 / NA | 56 | W156* (TGG→TGA) | rpsG | 30S ribosomal subunit protein S7 |
| Reads supporting (aligned to +/- strand): ref base C (1/0); major base T (30/23); minor base G (0/2); total (31/25) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.02e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GATGTTACGGTAGCGTGCGATGGGTGTTGTACGAGCCATTTGTTTCCTCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAACCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTGCAGCATCAGAAAGTTCGTTCGCCAGGCGCAGAGCCATGGATTTATCA > NC_000913/3473476‑3473746 | gATGTTACGGTAGCGTGCGATGGGTGTTGTACGAGCCATTTGTTTCCCCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAAc < 1:87518/143‑1 (MQ=255) aTGTTCCGGTAGCGTGCGATGGGTGTTGTACGCGCCATTTGTCTCCTCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACg < 2:617506/143‑1 (MQ=255) ttACGGTAGCGTGCGATGGGTGTTGTACGAGCCATTTGTTTCCTCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTa > 1:461909/1‑143 (MQ=255) ggTAGCGTGCGATGGGTGTTGGACGAGCCATTTGTTTCCTCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAgtgt < 1:509198/143‑1 (MQ=255) gCGTGCGATGGGTGTTGTACGAGCCATTTGTTTCCTCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGa > 1:517600/1‑143 (MQ=255) ggggcatggatggTCTACGCGCCAGTTGCTTCCTCGTGTATCTGTTAGGCGGTTAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAAc < 2:466833/138‑1 (MQ=255) gTGCGATGGATGTTGTACGAGCCATTTGTTTCCTCGTTTATCTTTTAGGCGCTCAATTTAAGTAGCACAACGCGCGCTGCTTACTGGAAGCGCCCGCCTGGTGGCTAAAACACCAACGGAATAACCCACGGCATTGTCCGAAc > 2:809630/1‑143 (MQ=255) tGGGTGTTGTACGAGCCATTTGTTTCCTCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCttg < 2:304855/143‑1 (MQ=255) tgttgtACGAGCCATTTGTTTCCTCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTgg > 1:746147/1‑143 (MQ=255) tgttgtACGAGCCATTTGTTTCCTCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTgg > 1:659653/1‑143 (MQ=255) tgttgtACGAGCCATTTGTTTCCTCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGCAGGGTGCGAACGCCTCGGTgg > 2:682010/1‑143 (MQ=255) ttgtACGAGCCATTTGTTTCCTCGTTTGTTTGTCAGGCGCTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCt > 2:551389/1‑143 (MQ=255) aCGAGCCATTTGTTTCCTCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCACACGCGATGCTGCCCGCTAGGCTGCGCACGCCTTGTTGGCTTCgc > 2:9370/1‑142 (MQ=255) gCCATTTGTTTCCTCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGAGAATCAACGGTAGTGTGCGAACGCCTTGTTGGCGTCGGCCAt > 1:753779/1‑143 (MQ=255) tttGTTTCCTCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACgg < 1:776126/143‑1 (MQ=255) tgtcgtgTTGATGTTTTAGGCGTTCAATGTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAATTCCGATGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGTTTCGGCCATACGGTGAAc < 2:172352/137‑1 (MQ=255) tCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGGCTGGTGACTAAAACTCAGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGATTCGGCCATGCGGTGAACggat > 2:808776/1‑140 (MQ=255) tCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCt > 2:29433/1‑143 (MQ=255) aTCTTGTAGGCGTTCAATTTGAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGt < 1:201794/143‑1 (MQ=255) tCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAAAGCCTTGTTGGCTTCGGCCATACGGTGAACGTGTGCACggg > 1:707970/1‑141 (MQ=255) cTTTTAGGCGTTCAATTTAGGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGttt < 1:972039/143‑1 (MQ=255) cTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAACGGATAATTGTTCGTGTTTTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGctt > 1:991573/1‑143 (MQ=255) cTTCTACGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAACCTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGttt < 1:63073/143‑1 (MQ=255) tttAGGCGTGCAAGTTAAGTAGCCGAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCt < 2:99562/143‑1 (MQ=255) ggCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGCAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATAAAAGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAAc > 1:528554/1‑143 (MQ=255) cGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTg < 1:398926/143‑1 (MQ=255) ttCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGCAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCa > 2:710832/1‑143 (MQ=255) ttCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCCTACGGTGAACGTCTTCACGTTTGTTAACTGCa > 1:171752/1‑143 (MQ=255) tCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAg > 2:851314/1‑143 (MQ=255) tAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGtt < 1:551389/143‑1 (MQ=255) ggaaggtgggCTGCGTAGTGGAGGGGCCCGGCTGGTGACGAAAGCTGCGAAGGGATAAGCAACGGTAGTGTGCGAACGCCTTGTTGGCGTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCt < 2:961619/136‑1 (MQ=255) ccAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCGACGGGAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAAAGTGTTCACGTTTCTTAACTGCACGTGCTGTGTTTTCt > 2:242959/1‑143 (MQ=255) cAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATCATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGCTTCTTAACTGCAGTACCTTTGTTTTCTg > 2:370363/1‑143 (MQ=255) aaaGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTgc > 2:863690/1‑143 (MQ=255) aaGCGGGCTGCTTACCGGAAGCGCCCGCTTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTgca < 2:278216/143‑1 (MQ=255) cGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTgcagca < 1:604119/143‑1 (MQ=255) gggCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTGCAGCAt < 1:100927/143‑1 (MQ=255) gggCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTGCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTgcagcct > 1:336519/1‑141 (MQ=255) tctgccTACGGGGAGTGCCCGCCTGGGTACTACAGCTCCGAAGGGATAATCAACGCTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTGCAGCATCa < 2:641753/142‑1 (MQ=255) gctTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTGCAGCATCAGaa > 1:736807/1‑143 (MQ=255) gctTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTGCAGCATCAGaa < 1:611424/143‑1 (MQ=255) ttACTGGAAGCGCCCGCCTGGTGACTCAAACTCCGAAGGGATAATCAACGGTAGTGTGAGAACGACTTGTTAACTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGAAGTACCTTTGTTTTCTGCAGCATCAGAAAg > 1:7927/1‑143 (MQ=255) ttACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTTTGCAGCATCAGAAAg < 1:734774/143‑1 (MQ=255) ttACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTGCAGCATCAGAAAg > 1:943940/1‑143 (MQ=255) gcccgccTAGTTATTAAAACTCCGAAGGGATAATCAACGGTATTTTGCGAACGCCTTGTTGTCTTCGGCCATACTGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTGCAGCATCAGAAAGTTCGTTCGCCa < 1:468806/143‑1 (MQ=255) ccgccTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTGCAGCATCAGAAAGTTCGTTCGCCAgg > 1:413738/1‑143 (MQ=255) ccgccTGGCGACTACAACTCCTAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACTTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTGCAGCATCAGAAAGTTCGTTCGCCAgg < 1:846231/143‑1 (MQ=255) cgccTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTGCAGCATCAGAAAGTTCGTTCGCCAGgc < 1:756621/143‑1 (MQ=255) cTGGTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTGCAGCATCCGAAAGTTCGTTCGCCAGGCGCa > 2:13026/1‑143 (MQ=255) ggTGAGTAAAACTCCGGAGGGAAAAGCCCCGGTAGGGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGCACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTGCAGCATCAGAAAGTTCGTTCGCCAGGCGCaga < 2:8944/143‑1 (MQ=255) gTGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTGCAGCATCAGAAAGTTCGTTCGCCAGGCGCagag > 1:430032/1‑143 (MQ=255) tGACTAAAACTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTGCAGCATCAGAACATTCGTTCGCCAGGCGCAGAGc > 2:927918/1‑143 (MQ=255) aaaCTCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTGCAGCATCAGAAAGTTCGTTCGCCAGGCGCAGAGCCATGGa < 1:58833/143‑1 (MQ=255) tCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTGCAGCATGAGAAAGTTCGTTCGCCAGGAGCAGAGCCATGGAGTTa > 1:858694/1‑143 (MQ=255) tCCGAAGGGATAATCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTGCAGCATCAGAAAGTTCGTTCGCGAGGCGCAGAGCCATGGATTTa > 1:358648/1‑143 (MQ=255) gAAGGGATAATCAACGGTAGTGTACGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTGCAGCATCAGAAAGTTCGTCCGCCATGCGCAGACCCCTGGAGTTCTCa > 2:355302/1‑143 (MQ=255) | GATGTTACGGTAGCGTGCGATGGGTGTTGTACGAGCCATTTGTTTCCTCGTTTATCTTTTAGGCGTTCAATTTAAGTAGCCCAAAGCGGGCTGCTTACTGGAAGCGCCCGCCTGGTGACTAAAACTCCGAAGGGATAACCAACGGTAGTGTGCGAACGCCTTGTTGGCTTCGGCCATACGGTGAACGTCTTCACGTTTCTTAACTGCAGTACCTTTGTTTTCTGCAGCATCAGAAAGTTCGTTCGCCAGGCGCAGAGCCATGGATTTATCA > NC_000913/3473476‑3473746 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |