New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4472126 =	14 (0.780)	3 (0.180)	3/246	NT	19.3%	coding (270/936 nt)	pyrB	aspartate carbamoyltransferase catalytic subunit
	?	NC_000913	4472193 =	12 (0.710)					coding (203/936 nt)	pyrB	aspartate carbamoyltransferase catalytic subunit

GTCGGATGTTGGTTGGAGCCATCACCGGCATTCAGTACCGGTACATTGCCGGAAAACTCGGTGGCCAGGCGCGCCGCACCTTCCTGCGGATGACGCATCACTATCGCATCGACGTAAGTGCTGATAACCGAAATGGTATCGGCCAGCGTTTCGCCCTTTTTACCCAGTGATGTATTGGCGCTGTCGGAGAAGCCCACCACGCTGGCCCCCAGGCGGTGCATAGATGTTTCGAAAGAGAGGCGGGTACGGGTAGAGGCTTCGAAGAAACAGCTGGCAAT  >  NC_000913/4471986‑4472263                                                                                                                                             |                                                                                                                                          gTCGGATGTTGGTTGGAGCCATAACCGGCAGTCAGTACCGGTACATTGCGGGAAAACTCGGTGGCCAGGCGCGCCGCACCTTCCTGCGGGTGACGCATCACTATCGCATCGACGTAAGAGCTGATAACCGAAAAGGGATCGGc                                                                                                                                         >  2:318726/1‑143 (MQ=255)     gATGTTGGTCGGAGTTTTCTCCGTCATTCAGTACTGGTACATTGCCGGAAAAACCGGTGGCCAGGCGCGCCGCACCTTCCTGCGGATGACGCATCACTATCGCATCGACGTAAGTGCTGATAACCGAAATGGTATCGGCCAGc                                                                                                                                     <  1:104644/143‑1 (MQ=255)                      tCACCAGCATTGAGTTCAGGTACATTGCCTGAAAACTCGGTGGCCAGGCGCGCCGCACCTTCCTGCGGATGACGCATCACTATCGCATCGACGTAAGTGCTGATAACCGAAATGGTATCGGCCAGCGTTTCGCCCTTTTTAcc                                                                                                                    <  1:151791/143‑1 (MQ=255)                          cGGCATTCAGTACCGGTACATTGCCGGAAAACTAGGTGGCCAGGCGCGCCGCACCTTCCTGCGGATGACGCAACACTATCGCATCGACGTAAGTGCGGATAACCGAAATAGTCTCCGCCAGCGTTTCACCATTTATAcgaagc                                                                                                                >  2:62841/1‑138 (MQ=255)                                      ccGGTACATTGCCGGAAAACTCGGTGGCCAGGCGCGCCGCACCTTCCTGCGGATGACGCATCACTATCGCATCGACGTAAGTGCTGATAACCGAAATGGTATCGGCCAGCGTTTCGCCCTTTTTACCCAGTGAGGCATAGgcg                                                                                                    >  2:61570/1‑143 (MQ=255)                                                     aaacgtCGGTCGCCCGGCGCGCCGCACCTCCCCGCGGATGACGCATCACTATCGCATCGACGTAAGTGCTGATAACCGAAATGGTATCGGCCAGCGTTTCGCCCTTTTTACCCAGTGATGTATTGGCGCTGTCGGAGAAGccc                                                                                     <  2:243607/138‑1 (MQ=255)                                                       aaCTCGGTGGCCAGGCGCGCCGCACCTTCCTGCGGATGACGCATCACTATCGCATCGACGTAAGTGCTGATAACCGAAATGGTATCGGCCAGCGTTTCGCCCTTTTTACCCAGTGATGTATTGGCGCTGTCGGAGAAGCccac                                                                                   <  2:212066/143‑1 (MQ=255)                                                              acaaagtcattgccagctgtttcttcgaagcctctacccgtacccgcctctctttcgaaacatctatgcaccgcctgggGGCCAGCGTTTCGCCCTTTTTACCCAGTGATGTATTGGCGCTGTCGGAGAAGCCCACCACGCTg                                                                            <  1:136504‑M1/64‑1 (MQ=255)                                                                aaggccatggccagccggtcctgcgaagcctctacccttacccgcctctctttcgaaacatctatgcaccgcctgggGGCCAGCGTGTCGCCCTTTTTTCCCAGTGATGTATTGGCGCTGTCGGAGAAGCCCACCACGCTGGc                                                                          >  1:130788‑M1/78‑143 (MQ=255)                                                                  agtcattgccagctgtttcttcgaagcctctacccgtccccgcctctctttcgaaacatctatgcaccgcctgggGGCCAGCGTTTCGCCCTTTTTACCCAGTGATGTATTGGCGCTGTCGGAGAAGCCCACCACGCTGGccc                                                                        >  2:136504‑M1/76‑143 (MQ=255)                                                                                cTTCCTGTGGTGGTCCCATCACGACCGCACGTACGTAGGTGCTACTAACCGAAATGGGATCGGCCAGCTTTTCGCCCTTTTTACCCAATGATGTATTGGCGCTGTCGGAGAAGCCCTCCACGCTGGTCCCCAGGCGGTGCATa                                                          <  2:16094/143‑1 (MQ=255)                                                                                 ttCCTGCGGATGACGCATCACTATCGCATCGACGTAAGTGCTGATAACCGAAATGGTATCGGACAGCGTTTCGCCCTTTTTACCGAGTGATGTATTGGCGCTGTCGGAGAAGCCCACCACGCTAGCCCCCAGGCGGTGCagag                                                         >  2:195875/1‑143 (MQ=255)                                                                                            gACGCATCACTATCGCATCGACGTAAGTGCTGATAACCGAAATGGTATCGGCCAGCGTTTCGCCCTTTTTACCCAGTGATGTATTGGCGCTGTCGGAGAAGCCCACCACGCTGGCCCCCAGGCGGTGCATAGATGTTTCGaaa                                              <  2:56385/143‑1 (MQ=255)                                                                                                           cATCGACGTAAGTGCTGATAACCGAAATGGTATCGGCCAGCGTTTCGGGCTTTTTACCCAGTGATGTATTGGCGCTGGTGGAGAAGCCCACCACGCTGGCCCCCAGGCGGTGCATAGATGTTTCGAAAGAGAGGcgggtacgg                               <  2:345286/143‑1 (MQ=255)                                                                                                                         cTGATAACCGAAATGGTATCGGCCAGGGTGGCGCCCTTGTGAGCCAGTGAGGTATTGGCGCTGTCGGAGAAGCCCACCACGCTGGCCCCCAGGCGGTGCATAGATGTTTCGAAAGAGAGGCGGGTACGGGTAGAGGCTTCgaa                 <  1:30425/143‑1 (MQ=255)                                                                                                                              aaCCGAAATGGTATCGGCCAGCGTTTCGCCCTTTTTACCCAGTGATGTATTGGCGCTGTCGGAGAAGCCCACCACGCTGGCCCCCAGGCGGTGCATAGATGTTTCGAAAGAGAGGCGGATACGGGTAGAGGCTTCGAAGAAAc            >  1:175480/1‑143 (MQ=255)                                                                                                                                acGAAATGGTATAGGCTAGCTTTTCGTCATTTTTAAACAGTGATGTATTGGCGATGTCGGAGAAGCCCACCACGCTGGACCCCAGGCGGTGAATAGATGTTTCGAAAGAGAGGAGGGTACGGGTAGAGGCTTCGAAGAAACAg          <  1:85026/142‑1 (MQ=255)                                                                                                                                   aaaTGGTATCGGCCAGCGTTTCGCCCTTTTTACCCAGTGATGTATTGGCGCTGTCGGAGAAGCCCACCACGCTGGCCCCCAGGCGGTGCATAGATGTTTCGAAAGAGAGGCGGGTACGGGTAGAGGCGTCGAAGAAACAACTg       >  2:225258/1‑143 (MQ=255)                                                                                                                                        ttATCGGCTATCTTTTTGTCCTTTTTACTTTTTTATATATTGGCGCTGTCGGAGAAGCCAACCAAGCTGGCCCCCAGGCGGTGCATAGATGTTTCGAAAGAGAGGCGGGTACGGGTAGAGGCTTCGAAGAAACAGCTGGCAAt  <  1:124263/142‑1 (MQ=255)                                                                                                                                             |                                                                                                                                          GTCGGATGTTGGTTGGAGCCATCACCGGCATTCAGTACCGGTACATTGCCGGAAAACTCGGTGGCCAGGCGCGCCGCACCTTCCTGCGGATGACGCATCACTATCGCATCGACGTAAGTGCTGATAACCGAAATGGTATCGGCCAGCGTTTCGCCCTTTTTACCCAGTGATGTATTGGCGCTGTCGGAGAAGCCCACCACGCTGGCCCCCAGGCGGTGCATAGATGTTTCGAAAGAGAGGCGGGTACGGGTAGAGGCTTCGAAGAAACAGCTGGCAAT  >  NC_000913/4471986‑4472263

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.