| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 4,296,060 | C→T | 27.0% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 27.0% | 16.9 / 12.3 | 26 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Reads supporting (aligned to +/- strand): ref base C (11/8); new base T (4/3); total (15/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.49e-01 | |||||||||||
CGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTT > NC_000913/4295932‑4296199 | cGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATGTAGAGTGATTTTGTAGGTCGGCTAAGGCGTTTACGCCGCAT‑CCGACAGCACCCACTGATGCGACGc > 2:77887/1‑143 (MQ=11) tCCGGCACCGACGCCTGAGGGGACCGTCAGCGCGTCTTATCGGGCCTACGCCAGACTGCGCTATAGCCTGACTTAGCGTGATTTTGCAGGTCGGATAAGTCGTTTACGCCGCAT‑CCGACATCAATGCCTGATGCGACGCTTGc < 2:154656/143‑1 (MQ=11) cATCAACGCCTGATGGGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAACCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAATGCCTGATGCGACGCTTGCCGCGt > 2:306381/1‑143 (MQ=255) cATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAATGCCTGATGCGACGCTTGCCGCGt > 2:306671/1‑143 (MQ=25) cATCAACGCCGGATGCGACGCTTACCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAATGCCTGATGCGACGCTTGCCGCGt < 1:77887/143‑1 (MQ=255) aTCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGGTTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGGCATCACCGCCAGAGGCGCGGCTGGCcgcggc > 1:154656/1‑141 (MQ=11) cAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCtt < 1:335463/143‑1 (MQ=39) aaCGCCTTATGCGACGCTTACCGCGTCTTATCAGGCCCACGCCAGACAGCGCCACAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTa < 1:174183/143‑1 (MQ=11) cGCCTGATGCGACGCTTGACGCGTCTAATCAGCCCTATCCCAGACAGCGCAATAGCCTGATTAAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATc < 2:79192/143‑1 (MQ=14) ccTGATGCGCGGCTTATCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCTTTATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAg < 2:207613/143‑1 (MQ=11) gATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGCTTTAGCGTGCTTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGcc > 1:220709/1‑143 (MQ=255) gCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTat > 1:54195/1‑142 (MQ=37) cGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACg > 1:49709/1‑143 (MQ=38) cGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGGCTTATGAGGCCTaag > 1:49702/1‑141 (MQ=255) aCGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCTCAT‑CCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGTCCtctctt > 1:250427/1‑138 (MQ=255) cGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCa < 1:353037/143‑1 (MQ=39) aGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTCTGCGCGATTCACAAGGCGTGTACG‑GTCATAATCTCATTGACGCCTGATGAGACGCTTCCCGCGCCTCATCAGGCCTACGCCACGCCGCGCGGTCGCCTGa > 1:363884/1‑143 (MQ=2) tGATTTTGTAGGGCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGCCAGCGCAATAGCCGGAATAAGCGTGATTTTGTAGGGCGGATAAGGCGTTTATg > 1:357665/1‑143 (MQ=11) ttttGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCtt > 1:102582/1‑60 (MQ=35) ttttGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCtt < 2:102582/60‑1 (MQ=38) gATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGCCAGCGCAATAGCCTTATTTAGCGTGACTTCGTGGGTCGGACAAGGCGATTCAGCCGCAGCCGAcgccc > 2:227608/1‑139 (MQ=14) gATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTg < 1:16066/106‑1 (MQ=40) gTTTACGCCGCAT‑CCGACATCAATGCCTGATGCGACGCTTGCCGCGt < 2:233582/47‑1 (MQ=255) gTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGt > 1:233582/1‑47 (MQ=255) gACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGAAGGAGCGGGAGGTTGTAGGTCGGATAAGGCGATTACGCAGCATCCGACAGCAAAGCCTGCCGCGAAACTAAAcgc > 2:89322/1‑143 (MQ=11) cAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCtt < 1:54798/143‑1 (MQ=32) | CGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCAT‑CCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTT > NC_000913/4295932‑4296199 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |