New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2520948 =	7 (0.680)	3 (0.300)	3/254	NT	35.9%	noncoding (18/76 nt)	valU	tRNA‑Val
	?	NC_000913	2521083 =	4 (0.410)					noncoding (33/76 nt)	valX	tRNA‑Val

AAATTGCGCAACACGGTCTGTTTTGCGATCATCTTGCTTAAATTTACGACGAACGAACAATTTCTTTAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTA  >  NC_000913/2520809‑2521033                                                                                                                                            |                                                                                      aaaTTGCGCAACACGGTCTGTTTTGCGATCATCTTGCTTAAATTTACGACGAACGAACAATTTCTTTAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACCCCGCGGGGGTGATTAGCTCGGCTGGga                                                                                    >  1:91835/1‑143 (MQ=255)                aagggaggtgctctcccagctgagctaatcacccacttcggtacttcacatttttacaagaaatttagctggcgagaaagtggtgggtgatgacgggatcgaaccgccgaccccctccttgtaaGGGAGAGCACCTCCCTTAc                                                                     >  1:1828‑M1/125‑143 (MQ=255)                       ttGTGATCATCTTGCTTAAATTTACGACGAACGAACAATTTCTTTAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAgggagg                                                              >  1:86562/1‑143 (MQ=255)                         gCGATCATCTTGCTTAAATTTACGACGAACGAACAATTTCTTTAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAgggg                                                            >  1:64930/1‑143 (MQ=255)                          cGATCATCTTGCTTAAATTTACGACGAACGAACAATTTCTTTAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTCCAAGGAagggg                                                           >  2:126611/1‑143 (MQ=255)                                               cgacgaACGAACAATTTCCTTAGAAAATGCGTTGACTCAGTTTGAACGCTCCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGtcat                                      <  1:1974/143‑1 (MQ=255)                                                                 tttAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACAAACTACTTTa                    >  1:134387/1‑143 (MQ=255)                                                                                   tCATTTTGAACTCTCCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGCGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTa  <  1:103787/143‑1 (MQ=255)                                                                                   cgctgttGACCCCTCCCTATGCTGCCACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGCTCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTa  <  2:139342/138‑1 (MQ=21)                                                                                                                      accgccgaccccctccttgtaaGGGAGAGCACCTCCCTTACAag                                                                  >  1:157246‑M1/23‑44 (MQ=255)                                                                                                                      accgccgaccccctccttgtaaGGGAGAGCACCTCCCTTACAag                                                                  <  2:157246‑M1/22‑1 (MQ=255)                                                                                                                                            |                                                                                      AAATTGCGCAACACGGTCTGTTTTGCGATCATCTTGCTTAAATTTACGACGAACGAACAATTTCTTTAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTATGTAGTCTCCGCCGTGTA  >  NC_000913/2520809‑2521033

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.