| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,560,455 | 1 | . | G | 97.1% | 98.1 / NA | 36 | pseudogene (151/758 nt) | glpR | DNA‑binding transcriptional repressor GlpR |
| Reads supporting (aligned to +/- strand): ref base . (1/0); major base G (18/16); minor base A (1/0); total (20/16) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑C‑CAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGT > NC_000913/3560315‑3560583 | cGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGAGCGATGCGCTCTTTTTCTTCGGTCTGGGAGGCCTTGCGATCCTGCCACGGCGTGTTAACGGAACTGGAAAGCAGCGCCGCGCCGCCATGATGG‑cgc > 1:701091/1‑141 (MQ=255)cGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTATGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCACCGCCGCACGGCCATGATGG‑cgc > 2:238252/1‑141 (MQ=255) aacaaGCGTCTAGCCATTGTGCATTTGCTCCTCCACTTTGTTGGCGATGCGCTCTTTTTCTGCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGa < 1:683055/139‑1 (MQ=255) aaaCAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGTCTTGCGATCGTGCCACGGCGTGTTAACCGAGCTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGa < 1:61861/143‑1 (MQ=255) gTCGATCCATTGGGTATTTGCTCTGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGtt < 1:162391/143‑1 (MQ=255) tCGATCCATTTGGTTTTTGTTCCGCCACTTTTCGGGCTATGCACTCTTTGTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGttt < 1:88115/143‑1 (MQ=255) gAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTCACCGAACTGGAAGGCAGCGCCCCACCGCCATGATGC‑CGCAGGAACAGGTtgtg > 1:511711/1‑143 (MQ=255) ttGGGGATTTGCTCAGTCACTTTGCGGGAGATGCGCTATTTTCCTTCGGTCCGGGGGGCCTTGCGATCGGGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGc < 1:552967/143‑1 (MQ=255) ttgggATTGGTTCCGCCACTTTTCGGGCGATGCGCTCTTTTTCTTCTGTGTAGATTGCCTTGCGATCGTGCCACGGCGTGTTTACTGAACTGGAATGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGcc < 2:125921/141‑1 (MQ=255) gggATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGCTCG‑CGCAGGATCAGGTTTTGATCCGCCAg > 1:438082/1‑143 (MQ=255) tttGCTCCTCCACTTTGCGGGCGATGCGCTCTTTTGCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCa < 1:429707/143‑1 (MQ=255) ccGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGAGCGTGCCACGGTGTGTTAACCGAACTGGGCGGCAGCGCTGCGCCGCCATCCTGG‑CACCGGATAAGGTTTTGCTCCGCCAGCGCAGTGAgg > 2:181367/1‑143 (MQ=255) cGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGt < 2:569617/143‑1 (MQ=255) cGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGAGCAGGCGATGCTGCGCGAGCCCATagagac > 2:468435/1‑141 (MQ=255) gggCGATGCGCTCTTTTTCTTAGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACAGCCATGATGG‑CGCAGGATCAAGTTTTACTCCGCCACATCATAGAGGTCGAGGAGAATa > 2:683575/1‑143 (MQ=255) cGATGCGCTCTTTTTCTTCGGTCTGGGTAGCCTTGCGATCGTGCCACGCCGTGTTAACCGAACTGAACGGCAGCGCCGCACCGCCATGATGGAG‑CAGAATCAGGTTTTGCACCGCCAGCTCATTACCGTCGCAGCGaaaaata > 2:512920/1‑138 (MQ=255) cgcTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCgg < 1:477632/143‑1 (MQ=255) gcTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCggg < 1:683533/143‑1 (MQ=255) gcTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCAAGCTCATTGAGGTCGCGGCGAATAGTATGCggg > 1:294849/1‑143 (MQ=255) tttttCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGa > 1:786223/1‑143 (MQ=255) ttcGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCCCCGCCATGATGG‑CGCAGGATAAGGTTTTGCTCCGCCAGCTCCTTGAGGTCGCGGCGAATAGCCGGCGGGCTGACGgaga > 2:364343/1‑143 (MQ=255) ggcgggggggCCGTGCGATCGGGGCGCGGCGTGTTAGCCGGACTGGACGGCAGCGCCGCACCGCCAGGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATg < 2:105747/139‑1 (MQ=255) tttCGTGCGACGGCGTGTTAACCGAACTGGAAGGGAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCCGCTCATCGAGTTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCg < 1:53293/141‑1 (MQ=255) gATCGTGCCACGGCGTGTTAACCGAACTCGACGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTACTCCGCCAGCTCATTGAGATAGCGACAAATAATCTACGGGCTGACGCAGAAATGCTCTACCAGCTCTTca > 1:782579/1‑142 (MQ=255) ccACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGa > 1:744820/1‑143 (MQ=255) cACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCACCTCCTCGGTACTGAc > 1:203176/1‑143 (MQ=255) gtgtTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACaagagc > 1:751973/1‑138 (MQ=255) tgtTAACCGAACTGGAAGGCAGCGCCGCCCCGCCATGATGG‑CGCAGGATCAGATTTTGCTCCGCCAGCTCAATGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAAccc > 1:44217/1‑143 (MQ=255) aCCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGCACTGCTCTACCCGCTCTTCGGTACTGACATAACCctgatg > 1:383314/1‑143 (MQ=255) cctaaCTGGAATGCAGCGCCGCTCCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGt < 1:632808/140‑1 (MQ=255) ccGGACGGGGAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTGGCTCCGCCGGCTCATTGACGTCGATGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGt < 1:718528/143‑1 (MQ=255) tGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAAcc > 1:339528/1‑143 (MQ=255) ggAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGCATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGTGCTGACGGAGAAATGCTATACAAGCACTTCGGTACTGACATAACGCTGCTGTTTAACCa > 1:364986/1‑143 (MQ=255) aGGCTGGGCCGCACCGCGATGAGGG‑CGCAGTATCAGGTTTTGCTCCGCCAGCTCATCGAATTCGGGGCGTGTAGTCTGCGGGCTGACGGAGAAATGCTGTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGtt < 2:273181/143‑1 (MQ=255) ccgcACCGCCATGCTGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCTGTACTGACATAACCCTGCTGTTTAACCAGTTCGataata < 2:670692/143‑1 (MQ=255) cgcACCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTCCCCAGTTCGCTAATAc > 1:308404/1‑143 (MQ=255) aCCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACAGAACCCTGCTGTTTAACCAGTTCGATAATAGCGt > 2:186755/1‑143 (MQ=255) aCCGCCATGATGG‑CGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGACGTCGCGGCGAATAGTCTTCGGAATGACGAAGAAATACTCTACAAACTCTACAGTACTGACATAACACTGCTGTTTAACCAGTTCGATAATATCGt > 1:249067/1‑143 (MQ=255) | CGATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑C‑CAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGT > NC_000913/3560315‑3560583 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |